mRNA_H-elongata_contig69292.14577.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69292.14577.1
Unique NamemRNA_H-elongata_contig69292.14577.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69292.14577.1 vs. uniprot
Match: A0A6H5J832_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J832_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.370e-21
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = 1 
Query:    1 LQGISCIFSAFAGMGAGRLASTGGQFKLLLAAALSLAIITVTVALAIEDNFDVVGWEESGCNKGKRGAKKAPGGLLTVLRASVSLFRRSPLLAALLVEAVVCQV 312
            +QG+SCI SAF+G+ AGRLA+ GGQ  LLLAAALSL  ITVT            G+E+    +GK G KK+  G+L+VLR+S SLFR+SPLLAALL EA VCQV
Sbjct:  143 IQGVSCICSAFSGVAAGRLATAGGQAYLLLAAALSLGTITVTAVALTPVKAGGWGFEKV---EGKTGKKKSDHGMLSVLRSSASLFRQSPLLAALLAEATVCQV 243
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69292.14577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J832_9PHAE2.370e-2158.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69292contigH-elongata_contig69292:2327..3034 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog2880.D7FW23
Preferred nameNTT6
EggNOG free text desc.TLC ATP/ADP transporter
EggNOG OGs2CHKX@1,2SD3X@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons2
Model size312
Cds size312
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931090.1731107-CDS-H-elongata_contig69292:2326..23991622931090.1731107-CDS-H-elongata_contig69292:2326..2399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69292 2327..2399 -
1691679693.7609828-CDS-H-elongata_contig69292:2326..23991691679693.7609828-CDS-H-elongata_contig69292:2326..2399Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69292 2327..2399 -
1622931090.1953063-CDS-H-elongata_contig69292:2795..30341622931090.1953063-CDS-H-elongata_contig69292:2795..3034Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69292 2796..3034 -
1691679693.7718298-CDS-H-elongata_contig69292:2795..30341691679693.7718298-CDS-H-elongata_contig69292:2795..3034Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69292 2796..3034 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69292.14577.1prot_H-elongata_contig69292.14577.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69292 2327..3034 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69292.14577.1

>prot_H-elongata_contig69292.14577.1 ID=prot_H-elongata_contig69292.14577.1|Name=mRNA_H-elongata_contig69292.14577.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
LQGISCIFSAFAGMGAGRLASTGGQFKLLLAAALSLAIITVTVALAIEDN
FDVVGWEESGCNKGKRGAKKAPGGLLTVLRASVSLFRRSPLLAALLVEAV
VCQV
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mRNA from alignment at H-elongata_contig69292:2327..3034-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69292.14577.1 ID=mRNA_H-elongata_contig69292.14577.1|Name=mRNA_H-elongata_contig69292.14577.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=708bp|location=Sequence derived from alignment at H-elongata_contig69292:2327..3034- (Himanthalia elongata Himel1 dioecious)
CTGCAGGGCATCTCCTGTATATTCAGCGCCTTCGCAGGGATGGGTGCGGG
ACGCTTAGCCTCGACGGGGGGTCAATTCAAGCTTCTTCTCGCCGCGGCCC
TGTCCCTGGCGATCATCACTGTAACCGTGGCGTTGGCGATTGAAGACAAT
TTCGACGTTGTCGGGTGGGAGGAGTCGGGGTGCAATAAGGGCAAGCGAGG
AGCAAAGAAGGCTCCTGGTGGGTTGCTGACCGTTCTCAGGTGACTCTTGG
GGTTGCACCCCATGCTTTCCCTTCGTGTTGCTGCGAGTCTGCACAACTCA
GGCAATCAACCGGTGCCCACGGCGCAGACACTAGCTATCCGACTATCCGC
TTTCGGCCCTGCAAAGACAAGTCGAGATGGCTCAGCGGGAGTTCGATGTT
TCAATTCCCTGGCATGTCTCACAAACTATACTATAATAGTAACCAAACTC
ATGCTTGAACACCGTCGTCAATCGGTAGGGCGAGGCGTTGACTTGCTGCC
ACGCGGGAGATTCACGAAAAGTCAGCAGCTGCGAACCCTCTGGACGCGGT
CGACTCGCAACGACTAAAAATAAAACGCTCGTGACTGAACAACACTCGTG
CTGAACGCTCGCATGATCCGCCACCATCTTATCAGGGCGAGCGTTTCGTT
GTTCCGTCGAAGCCCCTTGCTCGCGGCCCTTCTGGTGGAAGCCGTCGTGT
GTCAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig69292:2327..3034-

>mRNA_H-elongata_contig69292.14577.1 ID=mRNA_H-elongata_contig69292.14577.1|Name=mRNA_H-elongata_contig69292.14577.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig69292:2327..3034- (Himanthalia elongata Himel1 dioecious)
CTGCAGGGCATCTCCTGTATATTCAGCGCCTTCGCAGGGATGGGTGCGGG
ACGCTTAGCCTCGACGGGGGGTCAATTCAAGCTTCTTCTCGCCGCGGCCC
TGTCCCTGGCGATCATCACTGTAACCGTGGCGTTGGCGATTGAAGACAAT
TTCGACGTTGTCGGGTGGGAGGAGTCGGGGTGCAATAAGGGCAAGCGAGG
AGCAAAGAAGGCTCCTGGTGGGTTGCTGACCGTTCTCAGCTGCAGGGCAT
CTCCTGTATATTCAGCGCCTTCGCAGGGATGGGTGCGGGACGCTTAGCCT
CGACGGGGGGTCAATTCAAGCTTCTTCTCGCCGCGGCCCTGTCCCTGGCG
ATCATCACTGTAACCGTGGCGTTGGCGATTGAAGACAATTTCGACGTTGT
CGGGTGGGAGGAGTCGGGGTGCAATAAGGGCAAGCGAGGAGCAAAGAAGG
CTCCTGGTGGGTTGCTGACCGTTCTCAGGGCGAGCGTTTCGTTGTTCCGT
CGAAGCCCCTTGCTCGCGGCCCTTCTGGTGGAAGCCGTCGTGTGTCAGGT
GGGCGAGCGTTTCGTTGTTCCGTCGAAGCCCCTTGCTCGCGGCCCTTCTG
GTGGAAGCCGTCGTGTGTCAGGTG
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