mRNA_H-elongata_contig69216.14571.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69216.14571.1
Unique NamemRNA_H-elongata_contig69216.14571.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69216.14571.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.180e-13
Identity = 30/50 (60.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    7 MVDGVDSLECDMPGVTLVTIPLAAGYWRGDVNSTNVEPCLLDDACKGGRG 156
            M DG DSLEC +PGVTL T+PLA GYWRGD+  T +  C    AC GG G
Sbjct:  988 MADGEDSLECSVPGVTLDTLPLAEGYWRGDITQTYIRECWNPSACAGGTG 1037
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BLAST of mRNA_H-elongata_contig69216.14571.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 2.200e-11
Identity = 27/52 (51.92%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 SAMVDGVDSLECDMPGVTLVTIPLAAGYWRGDVNSTNVEPCLLDDACKGGRG 156
            + M DG  SL+C  PG+TL T+PLA GYWRGD+  T +  C    AC GG G
Sbjct:  990 ATMADGEGSLDCSAPGITLDTLPLAEGYWRGDITQTYIRKCWNPSACAGGTG 1041
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BLAST of mRNA_H-elongata_contig69216.14571.1 vs. uniprot
Match: A0A835YMX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX7_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 3.940e-5
Identity = 20/43 (46.51%), Postives = 29/43 (67.44%), Query Frame = 1 
Query:   28 LECDMPGVTLVTIPLAAGYWRGDVN--STNVEPCLLDDACKGG 150
            L+C +PGVT+ T+PL  G+WRG++     ++ PC   DAC GG
Sbjct:  826 LDCQVPGVTIKTLPLRKGWWRGNLTLAQADILPCWNADACIGG 868
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69216.14571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTT7_ECTSI5.180e-1360.00Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JUJ2_9PHAE2.200e-1151.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YMX7_9STRA3.940e-546.51Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69216contigH-elongata_contig69216:1318..1783 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size157
Cds size150
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69216.14571.1prot_H-elongata_contig69216.14571.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69216 1318..1777 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.561245-CDS-H-elongata_contig69216:1317..13941622931089.561245-CDS-H-elongata_contig69216:1317..1394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69216 1318..1394 -
1691679693.5694988-CDS-H-elongata_contig69216:1317..13941691679693.5694988-CDS-H-elongata_contig69216:1317..1394Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69216 1318..1394 -
1622931089.5759106-CDS-H-elongata_contig69216:1704..17771622931089.5759106-CDS-H-elongata_contig69216:1704..1777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69216 1705..1777 -
1691679693.5801995-CDS-H-elongata_contig69216:1704..17771691679693.5801995-CDS-H-elongata_contig69216:1704..1777Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69216 1705..1777 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.5915709-UTR-H-elongata_contig69216:1777..17831622931089.5915709-UTR-H-elongata_contig69216:1777..1783Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69216 1778..1783 -
1691679693.5905077-UTR-H-elongata_contig69216:1777..17831691679693.5905077-UTR-H-elongata_contig69216:1777..1783Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69216 1778..1783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69216.14571.1

>prot_H-elongata_contig69216.14571.1 ID=prot_H-elongata_contig69216.14571.1|Name=mRNA_H-elongata_contig69216.14571.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
MVDGVDSLECDMPGVTLVTIPLAAGYWRGDVNSTNVEPCLLDDACKGGRG
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mRNA from alignment at H-elongata_contig69216:1318..1783-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69216.14571.1 ID=mRNA_H-elongata_contig69216.14571.1|Name=mRNA_H-elongata_contig69216.14571.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=466bp|location=Sequence derived from alignment at H-elongata_contig69216:1318..1783- (Himanthalia elongata Himel1 dioecious)
TCAGCCATGGTGGATGGCGTCGACTCCCTTGAGTGTGATATGCCGGGAGT
TACACTGGTGACGATTCCGCTGGCGGCAGGTGCGACTGTGAATCTGACTG
CGCTACCCGTTCATTTGTACCTTCTTCCATAATATTTTGTCACCATTACA
AGAACTCCAGTTGTTCATCGTTGACATCCCCCCCCCCCGTTGGACAATAC
TTCCCCTGAGACGATTGTTGACCTTCTCGAAGGTTTTCGATAATCAAATG
ATATTATTATCGTTTTCGGGTGCTATGTGTGTACAATTGACGCAAACACG
TCGTGGTCAATGTAAATATCGTTAGGCATCACTTTTCCGATATCGTTGTT
AGATTGCGCCCCCTCAATACCTTCAATGCATATATCAAGGCTACTGGAGA
GGCGACGTGAACAGCACGAACGTTGAGCCATGTCTGCTCGACGACGCCTG
CAAGGGTGGGAGAGGA
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Coding sequence (CDS) from alignment at H-elongata_contig69216:1318..1783-

>mRNA_H-elongata_contig69216.14571.1 ID=mRNA_H-elongata_contig69216.14571.1|Name=mRNA_H-elongata_contig69216.14571.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig69216:1318..1783- (Himanthalia elongata Himel1 dioecious)
ATGGTGGATGGCGTCGACTCCCTTGAGTGTGATATGCCGGGAGTTACACT
GGTGACGATTCCGCTGGCGGCAGATGGTGGATGGCGTCGACTCCCTTGAG
TGTGATATGCCGGGAGTTACACTGGTGACGATTCCGCTGGCGGCAGGCTA
CTGGAGAGGCGACGTGAACAGCACGAACGTTGAGCCATGTCTGCTCGACG
ACGCCTGCAAGGGTGGGAGAGGAGCTACTGGAGAGGCGACGTGAACAGCA
CGAACGTTGAGCCATGTCTGCTCGACGACGCCTGCAAGGGTGGGAGAGGA
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