mRNA_H-elongata_contig69216.14570.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69216.14570.1
Unique NamemRNA_H-elongata_contig69216.14570.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69216.14570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69216contigH-elongata_contig69216:170..770 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.4955263-CDS-H-elongata_contig69216:169..2991622931089.4955263-CDS-H-elongata_contig69216:169..299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69216 170..299 -
1691679693.5467296-CDS-H-elongata_contig69216:169..2991691679693.5467296-CDS-H-elongata_contig69216:169..299Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69216 170..299 -
1622931089.5184865-CDS-H-elongata_contig69216:621..7701622931089.5184865-CDS-H-elongata_contig69216:621..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69216 622..770 -
1691679693.5575945-CDS-H-elongata_contig69216:621..7701691679693.5575945-CDS-H-elongata_contig69216:621..770Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69216 622..770 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69216.14570.1prot_H-elongata_contig69216.14570.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69216 170..770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69216.14570.1

>prot_H-elongata_contig69216.14570.1 ID=prot_H-elongata_contig69216.14570.1|Name=mRNA_H-elongata_contig69216.14570.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
LPSHSRPTYNILSYNEAFPFALRAARITEKLQKKVERTCGWFKPTGVTQW
PVEGTESDATTERGDEVEEGAPSRNVARARGLGVRIRRAIPFQ
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mRNA from alignment at H-elongata_contig69216:170..770-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69216.14570.1 ID=mRNA_H-elongata_contig69216.14570.1|Name=mRNA_H-elongata_contig69216.14570.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=601bp|location=Sequence derived from alignment at H-elongata_contig69216:170..770- (Himanthalia elongata Himel1 dioecious)
CTGCCTTCCCATTCCCGCCCCACTTATAATATCTTGTCATATAACGAGGC
GTTTCCATTTGCCCTTCGCGCGGCTCGGATAACTGAAAAGCTGCAGAAGA
AGGTCGAACGGACGTGCGGCTGGTTCAAGCCCACCGGCGTCACCCAATGG
TACGTTTGAACACTCACGAATTGGCGTTTATTAGGTTTGCACCGGTAAGT
TGGTTCCACAAAGCAATGAATGGGGCCTCTATAACATTTATTTATATTTT
TACTTTAACATTTCTCGACAGCGTCATGCAAGGCAATGCAAACTTGCGCC
AGCGAAACGGTTTCGTACCAGTTCGTTGAATTTGACGCCATCGCCCCCTT
GGCGTGCTTTCTGGAACGAAAACACTATTCCGCACCGCCCTGCATGCTCC
CGTGCTGCTTCTGAAGACGCTTTTGTGTGTTCCTTGCTCATTCGTCTTCG
CCGAATCCGCATTTTATACAGGCCTGTCGAAGGTACCGAGTCGGACGCAA
CTACGGAGAGAGGAGACGAAGTGGAGGAGGGAGCACCTTCGAGGAACGTG
GCGAGAGCCAGGGGGCTCGGTGTCCGCATACGTCGAGCGATTCCGTTCCA
A
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Coding sequence (CDS) from alignment at H-elongata_contig69216:170..770-

>mRNA_H-elongata_contig69216.14570.1 ID=mRNA_H-elongata_contig69216.14570.1|Name=mRNA_H-elongata_contig69216.14570.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig69216:170..770- (Himanthalia elongata Himel1 dioecious)
CTGCCTTCCCATTCCCGCCCCACTTATAATATCTTGTCATATAACGAGGC
GTTTCCATTTGCCCTTCGCGCGGCTCGGATAACTGAAAAGCTGCAGAAGA
AGGTCGAACGGACGTGCGGCTGGTTCAAGCCCACCGGCGTCACCCAATGC
TGCCTTCCCATTCCCGCCCCACTTATAATATCTTGTCATATAACGAGGCG
TTTCCATTTGCCCTTCGCGCGGCTCGGATAACTGAAAAGCTGCAGAAGAA
GGTCGAACGGACGTGCGGCTGGTTCAAGCCCACCGGCGTCACCCAATGGC
CTGTCGAAGGTACCGAGTCGGACGCAACTACGGAGAGAGGAGACGAAGTG
GAGGAGGGAGCACCTTCGAGGAACGTGGCGAGAGCCAGGGGGCTCGGTGT
CCGCATACGTCGAGCGATTCCGTTCCAAGCCTGTCGAAGGTACCGAGTCG
GACGCAACTACGGAGAGAGGAGACGAAGTGGAGGAGGGAGCACCTTCGAG
GAACGTGGCGAGAGCCAGGGGGCTCGGTGTCCGCATACGTCGAGCGATTC
CGTTCCAA
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