mRNA_H-elongata_contig69200.14569.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69200.14569.1
Unique NamemRNA_H-elongata_contig69200.14569.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69200.14569.1 vs. uniprot
Match: A0A835YQR3_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQR3_9STRA)

HSP 1 Score: 120 bits (300), Expect = 5.910e-31
Identity = 62/106 (58.49%), Postives = 72/106 (67.92%), Query Frame = 1 
Query:    1 PHSALPVEIIQYSHDHIRRQLEKLPSLQGCKTALRVQMPDGIPFVTDNGNYIVDLRFRDPIVNPDIAAREISSVVGVVEHGLFLGMASSIVIAKEGGVEVRDYPSN 318
            PH  LPVEIIQ+   HIRRQ+E LPSL+GCK  LR+      P+VTDNGNYI DL+F  PI +P  AA E+S  VGVVEHGLFL MAS  +IA + GV     P N
Sbjct:  186 PHFDLPVEIIQFCQTHIRRQIEGLPSLKGCKANLRM------PYVTDNGNYIADLKFDAPIADPSQAAAELSDTVGVVEHGLFLDMASVCIIAGKDGVTTTHAPGN 285
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BLAST of mRNA_H-elongata_contig69200.14569.1 vs. uniprot
Match: A0A836CI02_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI02_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.580e-30
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:    1 PHSALPVEIIQYSHDHIRRQLEKLPSLQGCKTALRVQMPDGIPFVTDNGNYIVDLRFRDPIVNPDIAAREISSVVGVVEHGLFLGMASSIVIAKEGGVEVR 303
            PH  LPVEIIQ+ H+HIRR++E LPSL+GCK  LR  M    P+VTDN NYIVD +F  PI +P  A  E+ +VVGVVEHGLFLGM ++ +IA + G+ V+
Sbjct:  176 PHFDLPVEIIQFCHEHIRREVENLPSLKGCKAVLR--MSGDKPYVTDNANYIVDCKFDTPIKDPVQAGAELLNVVGVVEHGLFLGMTTACIIAGKDGISVK 274
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BLAST of mRNA_H-elongata_contig69200.14569.1 vs. uniprot
Match: E8Z6X5_PROMN (Ribose-5-phosphate isomerase (Fragment) n=1 Tax=Prorocentrum minimum TaxID=39449 RepID=E8Z6X5_PROMN)

HSP 1 Score: 107 bits (267), Expect = 6.180e-27
Identity = 52/111 (46.85%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:    1 PHSALPVEIIQYSHDHIRRQLEKLPSLQGCKTALRV-----QMPDGI-PFVTDNGNYIVDLRFRDPIVNPDIAAREISSVVGVVEHGLFLGMASSIVIAKEGGVEVRDYPS 315
            P   +PVEI+ + H+H  R + +LP+L+GCK  LR+       PDG  P VTDNGNYIVDL F DPI +P  A +++   VGVV+HGLF GM ++++IA   G+ V++ P+
Sbjct:   81 PGFPVPVEIVPFCHEHTMRVIAQLPALKGCKPVLRLGDCSNNKPDGEDPAVTDNGNYIVDLEFTDPIKDPVAAGQQLMRTVGVVDHGLFTGMTTAVIIAGADGISVKEAPA 191
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BLAST of mRNA_H-elongata_contig69200.14569.1 vs. uniprot
Match: A0A7S3H468_9STRA (Ribose-5-phosphate isomerase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H468_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.440e-25
Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:    1 PHSALPVEIIQYSHDHIRRQLEKLPSLQGCKTALRV-----QMPDGIPF-VTDNGNYIVDLRFRDPIVNPDIAAREISSVVGVVEHGLFLGMASSIVIAKEGGVEV 300
            P   LPVEI  + H+H RR +E LPS++GCK  LR+       PDG    VTDNGNYIVDL F +PI + ++AA E+   VGVVEHG+F GM +++++A + G+ V
Sbjct:  178 PGFPLPVEITPFCHEHTRRVIENLPSVKGCKAVLRMGSAANNKPDGDNIAVTDNGNYIVDLFFTEPIKDVELAANELKKTVGVVEHGIFEGMTTAVIVAGKSGIRV 283
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BLAST of mRNA_H-elongata_contig69200.14569.1 vs. uniprot
Match: A0A7S1WNQ4_ALECA (Ribose-5-phosphate isomerase n=2 Tax=Sar TaxID=2698737 RepID=A0A7S1WNQ4_ALECA)

HSP 1 Score: 101 bits (252), Expect = 2.670e-24
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:    1 PHSALPVEIIQYSHDHIRRQLEKLPSLQGCKTALRV-----QMPDGI-PFVTDNGNYIVDLRFRDPIVNPDIAAREISSVVGVVEHGLFLGMASSIVIAKEGGVEVRD 306
            P   +PVEI+ + H+H  R++ +LP+L GC+  LR+       PDG  P VTDNGNYIVDL+F  PI +P  A  ++ S VGVV+HGLF G+ ++ +IA   G+ V++
Sbjct:  133 PGFPVPVEIVPFCHEHTMRKIAELPALAGCEPVLRLGNVANNQPDGDEPAVTDNGNYIVDLKFTSPIKDPVAAGEQLKSTVGVVDHGLFTGITTACIIAGSDGISVKE 240
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BLAST of mRNA_H-elongata_contig69200.14569.1 vs. uniprot
Match: A0A812PVM2_9DINO (Ribose-5-phosphate isomerase n=4 Tax=Symbiodinium TaxID=2949 RepID=A0A812PVM2_9DINO)

HSP 1 Score: 102 bits (255), Expect = 4.000e-24
Identity = 50/108 (46.30%), Postives = 72/108 (66.67%), Query Frame = 1 
Query:    1 PHSALPVEIIQYSHDHIRRQLEKLPSLQGCKTALRV-----QMPDGI-PFVTDNGNYIVDLRFRDPIVNPDIAAREISSVVGVVEHGLFLGMASSIVIAKEGGVEVRD 306
            P   +PVEI+ + H+H  R++  LP+L+GC+  LR+       PDG  P VTDNGNYIVDL+F  PI +P  A  ++ + VGVV+HGLF GM ++ +IA + G+ V+D
Sbjct:  211 PGFPVPVEIVPFCHEHTMRKIASLPALKGCEPVLRLGNVANNQPDGDEPAVTDNGNYIVDLKFTSPISDPVAAGEQLKATVGVVDHGLFTGMTTACIIAGKEGIIVKD 318
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BLAST of mRNA_H-elongata_contig69200.14569.1 vs. uniprot
Match: A0A6T6DAD6_9RHOD (Ribose-5-phosphate isomerase n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6DAD6_9RHOD)

HSP 1 Score: 102 bits (254), Expect = 4.030e-24
Identity = 51/98 (52.04%), Postives = 67/98 (68.37%), Query Frame = 1 
Query:   10 ALPVEIIQYSHDHIRRQLEKLPSLQGCKTALRVQMPDGIPFVTDNGNYIVDLRFRDPIVNPDIAAREISSVVGVVEHGLFLGMASSIVIAKEGGVEVR 303
            A+PVEI  +   H   +L   P+L GC   LR+   +G P+VTDN NYIVDL F  PI +P  AA EI+S+VG+VEHGLFL M ++ +IAK GG+EV+
Sbjct:  200 AMPVEITPFCWQHSLNRLLNAPTLAGCTAKLRMDA-NGNPYVTDNDNYIVDLYFDTPIKDPKAAAEEINSMVGIVEHGLFLDMTTACIIAKSGGIEVK 296
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BLAST of mRNA_H-elongata_contig69200.14569.1 vs. uniprot
Match: A0A7S2FHL7_9STRA (Ribose-5-phosphate isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FHL7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.050e-23
Identity = 54/105 (51.43%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:    1 PHSALPVEIIQYSHDHIRRQLEKLPSLQG-CKTALRV-----QMPDGI-PFVTDNGNYIVDLRFRDPIVNPDIAAREISSVVGVVEHGLFLGMASSIVIAKEGGV 294
            P   +PVE++ + + HI RQ+  LPSL+G C   LR+       PDG  P VTDNGNYIVDL F  P+V P +AA E+ +VVGVVEHGLF GMA  +++A + GV
Sbjct:  130 PGFPVPVEVVPFCYLHIMRQIADLPSLKGRCSPTLRLGSSSNNKPDGDQPAVTDNGNYIVDLVFSKPLVKPALAASELKTVVGVVEHGLFCGMADEVLVAGKQGV 234
[Close]
BLAST of mRNA_H-elongata_contig69200.14569.1 vs. uniprot
Match: A0A2I0BB16_9ASPA (Ribose-5-phosphate isomerase n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0BB16_9ASPA)

HSP 1 Score: 100 bits (250), Expect = 1.200e-23
Identity = 48/102 (47.06%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:   10 ALPVEIIQYSHDHIRRQLEKLPSLQGCKTALRVQMPDGIPFVTDNGNYIVDLRFRDPIVNPDIAAREISSVVGVVEHGLFLGMASSIVIAKEGGVEVRDYPS 315
            A+PVE++Q+   + + +L++L   +GC+  LR+   DG P+VTDN NYIVDL F+ PI + ++A  EIS + GVVEHGLFL MA++++IA + GV ++D  S
Sbjct:  181 AMPVEVVQFCWKYNQTRLQELFKEEGCEAKLRLDS-DGNPYVTDNSNYIVDLYFKTPITDANVAGNEISDLQGVVEHGLFLDMATAVIIAGKEGVSIKDKVS 281
[Close]
BLAST of mRNA_H-elongata_contig69200.14569.1 vs. uniprot
Match: A0A482SU09_9ARCH (Ribose-5-phosphate isomerase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SU09_9ARCH)

HSP 1 Score: 99.4 bits (246), Expect = 1.510e-23
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 1 
Query:    1 PHSALPVEIIQYSHDHIRRQLEKLPSLQGCKTALRV-----QMPDGIPF-VTDNGNYIVDLRFRDPIVNPDIAAREISSVVGVVEHGLFLGMASSIVIAKEGGVEV 300
            PH  LPVEI  + H+H  R ++ LPSL GCK  LR+        DG    +TDNGNYIVDL F  PI +   AA+E+ + VGVVEHGLF+ MA+++++A + G+ V
Sbjct:  111 PHFPLPVEITPFCHEHTLRVIQSLPSLTGCKAVLRMGNVANNKKDGDNIAITDNGNYIVDLYFTAPIRDVQQAAKELKNTVGVVEHGLFVKMATAVIVAGKDGIRV 216
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69200.14569.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQR3_9STRA5.910e-3158.49Ribose-5-phosphate isomerase n=1 Tax=Tribonema min... [more]
A0A836CI02_9STRA1.580e-3057.43Ribose-5-phosphate isomerase n=1 Tax=Tribonema min... [more]
E8Z6X5_PROMN6.180e-2746.85Ribose-5-phosphate isomerase (Fragment) n=1 Tax=Pr... [more]
A0A7S3H468_9STRA3.440e-2549.06Ribose-5-phosphate isomerase (Fragment) n=1 Tax=Sp... [more]
A0A7S1WNQ4_ALECA2.670e-2445.37Ribose-5-phosphate isomerase n=2 Tax=Sar TaxID=269... [more]
A0A812PVM2_9DINO4.000e-2446.30Ribose-5-phosphate isomerase n=4 Tax=Symbiodinium ... [more]
A0A6T6DAD6_9RHOD4.030e-2452.04Ribose-5-phosphate isomerase n=1 Tax=Compsopogon c... [more]
A0A7S2FHL7_9STRA1.050e-2351.43Ribose-5-phosphate isomerase n=1 Tax=Florenciella ... [more]
A0A2I0BB16_9ASPA1.200e-2347.06Ribose-5-phosphate isomerase n=1 Tax=Apostasia she... [more]
A0A482SU09_9ARCH1.510e-2348.11Ribose-5-phosphate isomerase n=1 Tax=archaeon TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69200contigH-elongata_contig69200:294..1150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score101.7
Seed ortholog evalue2.3e-19
Seed eggNOG ortholog3075.A0A087SCM9
KEGG rclassRC00434
KEGG koko:K01807
KEGG ReactionR01056
KEGG Pathwayko00030,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,map00030,map00710,map01100,map01110,map01120,map01130,map01200,map01230
KEGG ModuleM00004,M00007,M00165,M00167,M00580
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0015977,GO:0015979,GO:0016020,GO:0016051,GO:0019253,GO:0019685,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042221,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0071704,GO:0098542,GO:1901576
EggNOG free text desc.Ribose-5-phosphate isomerase
EggNOG OGs34HQ9@3041,37IAG@33090,COG0120@1,KOG3075@2759
EC5.3.1.6
COG Functional cat.G
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931089.4393163-CDS-H-elongata_contig69200:293..4661622931089.4393163-CDS-H-elongata_contig69200:293..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69200 294..466 +
1691679693.5250576-CDS-H-elongata_contig69200:293..4661691679693.5250576-CDS-H-elongata_contig69200:293..466Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69200 294..466 +
1622931089.453091-CDS-H-elongata_contig69200:993..11501622931089.453091-CDS-H-elongata_contig69200:993..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69200 994..1150 +
1691679693.5365617-CDS-H-elongata_contig69200:993..11501691679693.5365617-CDS-H-elongata_contig69200:993..1150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69200 994..1150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69200.14569.1prot_H-elongata_contig69200.14569.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69200 294..1150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69200.14569.1

>prot_H-elongata_contig69200.14569.1 ID=prot_H-elongata_contig69200.14569.1|Name=mRNA_H-elongata_contig69200.14569.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
PHSALPVEIIQYSHDHIRRQLEKLPSLQGCKTALRVQMPDGIPFVTDNGN
YIVDLRFRDPIVNPDIAAREISSVVGVVEHGLFLGMASSIVIAKEGGVEV
RDYPSNRSP*
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mRNA from alignment at H-elongata_contig69200:294..1150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69200.14569.1 ID=mRNA_H-elongata_contig69200.14569.1|Name=mRNA_H-elongata_contig69200.14569.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=857bp|location=Sequence derived from alignment at H-elongata_contig69200:294..1150+ (Himanthalia elongata Himel1 dioecious)
CCTCACAGCGCGCTGCCAGTCGAGATCATCCAGTATTCGCACGATCACAT
CCGCCGGCAGCTCGAGAAGCTACCAAGCTTACAAGGGTGCAAGACCGCGC
TTCGCGTCCAAATGCCGGATGGCATCCCGTTTGTAACTGACAACGGAAAC
TACATCGTGGACCTGCGGTTTCGGTGAGCCTTATACTTTCGCCGGCGTAA
AATTGACATCCCATCTCTTCTTTTTTTTGCTGAGCGGTAGACCGCGTTGC
CGTCTTCGTTTCATTTTCTCCTACTGACTATGAGGCAATTGTACAGAGGC
GTTTTGGGCACTAGAATTGTCCCGTCCCGGTGTCATCGGATTGCAGGGGT
ACCGTAAGAGCTTTTGCACTTTTTTGCGATCGGCTCGGACGAAACTTCGC
TTGAGTATAATGATATCGGGTAGTGCCAGCGAAGCGCATCGGCCTAGAGC
GCGCTTGTCGAGACGGCGAACCGGACTGAAACCACATTCCACACACTCCG
CCCTGCTCTCCTAGCGTTACTCGTGCTTTCCCATCACGTTGATGTCAAAC
GAGGAGAGCCAACGAGGCGCGCGCGTGACTAAAACACACAATGGATAATA
AATAACCTATGGTTTCGTCTCAACGTCAACGCATTTCGGGAGCGTTGAAC
CCCCAAGCATAGCTCTGACAGCCCACGTGCACTAAATCTGCCAAAACCAG
AGATCCTATCGTCAATCCGGACATCGCTGCGCGGGAGATTTCGAGCGTGG
TTGGGGTTGTGGAGCACGGCTTGTTCTTGGGGATGGCGTCCTCGATCGTC
ATTGCCAAGGAAGGCGGCGTGGAAGTTCGGGATTATCCTTCAAATCGTTC
GCCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig69200:294..1150+

>mRNA_H-elongata_contig69200.14569.1 ID=mRNA_H-elongata_contig69200.14569.1|Name=mRNA_H-elongata_contig69200.14569.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig69200:294..1150+ (Himanthalia elongata Himel1 dioecious)
CCTCACAGCGCGCTGCCAGTCGAGATCATCCAGTATTCGCACGATCACAT
CCGCCGGCAGCTCGAGAAGCTACCAAGCTTACAAGGGTGCAAGACCGCGC
TTCGCGTCCAAATGCCGGATGGCATCCCGTTTGTAACTGACAACGGAAAC
TACATCGTGGACCTGCGGTTTCGCCTCACAGCGCGCTGCCAGTCGAGATC
ATCCAGTATTCGCACGATCACATCCGCCGGCAGCTCGAGAAGCTACCAAG
CTTACAAGGGTGCAAGACCGCGCTTCGCGTCCAAATGCCGGATGGCATCC
CGTTTGTAACTGACAACGGAAACTACATCGTGGACCTGCGGTTTCGAGAT
CCTATCGTCAATCCGGACATCGCTGCGCGGGAGATTTCGAGCGTGGTTGG
GGTTGTGGAGCACGGCTTGTTCTTGGGGATGGCGTCCTCGATCGTCATTG
CCAAGGAAGGCGGCGTGGAAGTTCGGGATTATCCTTCAAATCGTTCGCCC
TGAAGATCCTATCGTCAATCCGGACATCGCTGCGCGGGAGATTTCGAGCG
TGGTTGGGGTTGTGGAGCACGGCTTGTTCTTGGGGATGGCGTCCTCGATC
GTCATTGCCAAGGAAGGCGGCGTGGAAGTTCGGGATTATCCTTCAAATCG
TTCGCCCTGA
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