mRNA_H-elongata_contig69178.14566.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig69178.14566.1 vs. uniprot
Match: A0A6H5JK39_9PHAE (Cyclin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JK39_9PHAE) HSP 1 Score: 337 bits (865), Expect = 4.890e-111 Identity = 167/182 (91.76%), Postives = 176/182 (96.70%), Query Frame = 1
Query: 13 VTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMANALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSCFVAERMLQEVTMLDHLPSVIACCAIYVARKNMGRTCWSPTLEKYTKYNVEHLMPCLTEISRILNLEGGDLEAVKKKFSSSKFGAVATMNISVLPDD 558
VTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMA+ALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSC+VAERMLQEV+MLD+LPSV+ACCAIYVARKNMGRTCWSPTLEKYTKY VE LMPCL EISR+L EGGDLEAVKKKFSSSKFG+VATM +S+LPDD
Sbjct: 230 VTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMASALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSCYVAERMLQEVSMLDYLPSVVACCAIYVARKNMGRTCWSPTLEKYTKYRVEDLMPCLCEISRVLKQEGGDLEAVKKKFSSSKFGSVATMKVSILPDD 411
BLAST of mRNA_H-elongata_contig69178.14566.1 vs. uniprot
Match: A0A836CKN2_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKN2_9STRA) HSP 1 Score: 249 bits (635), Expect = 1.450e-76 Identity = 124/192 (64.58%), Postives = 155/192 (80.73%), Query Frame = 1
Query: 13 VTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMANALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSCFVAERMLQEVTMLDHLPSVIACCAIYVARKNMGRTCWSPTLEKYTKYNVEHLMPCLTEISRILNLEGGDLEAVKKKFSSSKFGAVATMNISVLPDDLQ*SNSRMRV 588
VTR NLQLVGVTA+LLASKYEEIYPP+IRDLV++TD+AY ++QIL+ME+ M N L+FR+TVPT YCFLLRYLKAAHAD++IVQLSC+VAERMLQE ML HLPSV AC AIY+AR+N+GR WSPTLEKYT Y L CL + ++ GDL+AV+ KF+S +FGAVATM+I + DD + S++ + +
Sbjct: 209 VTRSNLQLVGVTALLLASKYEEIYPPEIRDLVYMTDKAYTKEQILDMETEMLNRLEFRITVPTTYCFLLRYLKAAHADRRIVQLSCYVAERMLQEARMLRHLPSVAACAAIYLARRNLGRNAWSPTLEKYTGYVEADLASCLRDTCELM-AACGDLKAVRSKFTSKQFGAVATMDIDLSCDDEEESDADISI 399
BLAST of mRNA_H-elongata_contig69178.14566.1 vs. uniprot
Match: F0XYQ7_AURAN (Cyclin N-terminal domain-containing protein (Fragment) n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0XYQ7_AURAN) HSP 1 Score: 218 bits (555), Expect = 2.630e-66 Identity = 101/174 (58.05%), Postives = 138/174 (79.31%), Query Frame = 1
Query: 13 VTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMANALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSCFVAERMLQEVTMLDHLPSVIACCAIYVARKNMGRTCWSPTLEKYTKYNVEHLMPCLTEISRILNLEGGDLEAVKKKFSSSKFGAVATM 534
V R NLQLVGV+A+LLASKYEEIYPP+++DLV+ITD+AY ++QIL ME M AL++++T+ +I+CF++RYLKA HAD+++V L+ +VAERMLQE ML +LPS++A CA+Y+ARKN+GR WSPTL Y +Y L CL E+S +++ G L+AVKKK+SS K+G VA M
Sbjct: 90 VERSNLQLVGVSALLLASKYEEIYPPELKDLVYITDKAYTQEQILSMEEKMVKALKYKMTIASIHCFMMRYLKAGHADRRMVWLASYVAERMLQEYAMLKYLPSMVAACAVYIARKNLGRNAWSPTLLHYAQYTESSLRACLEEMSSVIHSTKGSLQAVKKKYSSEKYGQVALM 263
BLAST of mRNA_H-elongata_contig69178.14566.1 vs. uniprot
Match: A0A7S2E2Y9_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E2Y9_9STRA) HSP 1 Score: 205 bits (522), Expect = 2.930e-62 Identity = 102/176 (57.95%), Postives = 139/176 (78.98%), Query Frame = 1
Query: 13 VTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMANALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSCFVAERMLQEVTMLDHLPSVIACCAIYVARKNMGRTCWSPTLEKYTKYNVEHLMPCLTEISRILNLEGGDLEAVKKKFSSSKFGAVATMNI 540
V R LQLVGVTA+L+ASKYEEIYPP++RDLV+ITD+AY++ +IL ME T+ AL++ +T+ + +CFL+RYLKAAHAD+K+V L+C++ ER LQE ML +LPS +A AIY+ARKN+ R+ WSPTL KYT+ L CL +IS+IL+ + +L AVKKK+SS+KFG VA+M +
Sbjct: 19 VERSKLQLVGVTALLVASKYEEIYPPELRDLVYITDKAYSQQEILAMEETILKALEYNVTIASTHCFLVRYLKAAHADRKLVWLACYILERTLQEYHMLKYLPSTVASSAIYLARKNLQRSPWSPTLVKYTQNTESSLRACLEDISQILSAKL-NLTAVKKKYSSTKFGVVASMQL 193
BLAST of mRNA_H-elongata_contig69178.14566.1 vs. uniprot
Match: A0A836CHW6_9STRA (Cyclin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW6_9STRA) HSP 1 Score: 201 bits (510), Expect = 5.020e-60 Identity = 100/176 (56.82%), Postives = 130/176 (73.86%), Query Frame = 1
Query: 13 VTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMANALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSCFVAERMLQEVTMLDHLPSVIACCAIYVARKNMGRTCWSPTLEKYTKYNVEHLMPCLTEISRILNLEGGDLEAVKKKFSSSKFGAVATMNI 540
V R+ LQ+ GV A+LLASKYEEIYPP++ DLV++TDRA R+ IL E M L+FRLTVPT+YCFLLRYLKAAHAD+ IVQL+C+++ERML E ML HLPSV A A+Y++R+ R WSPTL +YT YNV L PCL +I + DL A K+KF + +FGAV+++++
Sbjct: 49 VAREGLQVAGVAALLLASKYEEIYPPEMCDLVYVTDRACAREAILAAERDMLARLEFRLTVPTVYCFLLRYLKAAHADRCIVQLACYISERMLLEARMLRHLPSVAASAAVYLSRRACNRNAWSPTLARYTGYNVAALTPCLRDICEAMR-RPCDLRASKRKFGTREFGAVSSLDV 223
BLAST of mRNA_H-elongata_contig69178.14566.1 vs. uniprot
Match: B8BZ02_THAPS (Cyclin N-terminal domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZ02_THAPS) HSP 1 Score: 200 bits (509), Expect = 3.680e-59 Identity = 94/178 (52.81%), Postives = 135/178 (75.84%), Query Frame = 1
Query: 10 QVTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMANALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSCFVAERMLQEVTMLDHLPSVIACCAIYVARKNMGRTCWSPTLEKYTKYNVEHLMPCLTEISRILNLEGGDLEAVKKKFSSSKFGAVATMNIS 543
+V+R LQLVGVTA+L+ASKYEEIYPP++RDLV+I DRAY++++ILEME + +L++++T+P+ + FL+RYLKAAHADKKIVQLSCF+ + LQ ML +LPS +A A+++AR+ +GR WSPTL KY +Y E +MP + + +L AV KK++SS++G VA ++IS
Sbjct: 101 EVSRPKLQLVGVTALLIASKYEEIYPPELRDLVYICDRAYSKNEILEMEEIILKSLEYQITIPSAHAFLVRYLKAAHADKKIVQLSCFILDGTLQSYNMLHYLPSQLAAAAVFIARRTVGRNAWSPTLLKYAQYREEDIMPVARAVLAEKSSSSTELRAVNKKYTSSRYGGVANISIS 278
BLAST of mRNA_H-elongata_contig69178.14566.1 vs. uniprot
Match: A0A1E7FEB9_9STRA (Cyclin_N-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEB9_9STRA) HSP 1 Score: 192 bits (488), Expect = 3.720e-56 Identity = 89/178 (50.00%), Postives = 130/178 (73.03%), Query Frame = 1
Query: 10 QVTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMANALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSCFVAERMLQEVTMLDHLPSVIACCAIYVARKNMGRTCWSPTLEKYTKYNVEHLMPCLTEISRILNLEGGDLEAVKKKFSSSKFGAVATMNIS 543
+V+R LQLVGVT++L+ASKYEEIYPP++RDLV+I DRAY R +I+EME + L++ +T+P+ + FL+R+LKAAHADK+IVQLSC++ + LQ +L +LPS +A A+++AR+ +GR WSPTL KY KY E +MP + +L AV KK++SS++G VA++ +S
Sbjct: 90 EVSRPRLQLVGVTSLLIASKYEEIYPPELRDLVYICDRAYTRTEIIEMEEKILKTLEYNITIPSAHAFLVRFLKAAHADKRIVQLSCYILDGTLQSYNLLHYLPSQLAAAAVFIARRTVGRNSWSPTLLKYAKYREEDIMPIAKAVMNEKANAAQELRAVNKKYTSSRYGGVASLTLS 267
BLAST of mRNA_H-elongata_contig69178.14566.1 vs. uniprot
Match: W7TQN9_9STRA (Cyclin n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQN9_9STRA) HSP 1 Score: 192 bits (487), Expect = 3.400e-55 Identity = 92/178 (51.69%), Postives = 132/178 (74.16%), Query Frame = 1
Query: 10 QVTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMANALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSCFVAERMLQEVTMLDHLPSVIACCAIYVARKNMGRTCWSPTLEKYTKYNVEHLMPCLTEISRILNLEGGDLEAVKKKFSSSKFGAVATMNIS 543
QV R LQLVGVTA L+A KYEEIYPP++++LV++TD AY R QI++ME+ M L+F++TV T +CFL+R+LKA HAD K+ L+ ++AER LQEV +L LPS++A A+Y+ARKN G WSPTL YTKY+ + L+PCL +S LN L+A++KK+ ++KF V+++ ++
Sbjct: 156 QVPRPKLQLVGVTAFLIACKYEEIYPPEVKELVYMTDAAYTRKQIIDMEAFMLATLKFQVTVCTTHCFLVRFLKAGHADNKLYFLASYIAERTLQEVDVLCFLPSMVAAAAVYLARKNCGMRSWSPTLNHYTKYSEDALLPCLRVLSPWLNSRSQTLQAIRKKYGAAKFMMVSSLELT 333
BLAST of mRNA_H-elongata_contig69178.14566.1 vs. uniprot
Match: A0A7S2PNA7_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PNA7_9STRA) HSP 1 Score: 191 bits (485), Expect = 4.360e-54 Identity = 95/184 (51.63%), Postives = 131/184 (71.20%), Query Frame = 1
Query: 10 QVTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMANALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSCFVAERMLQEVTMLDHLPSVIACCAIYVARKNMGRTCWSPTLEKYTKYNVEHLMPCLTEISRILNLEGGDLEAVKKKFSSSKFGAVATMNISVLPDDL 561
+VTR LQLVGVTA+L+ASKYEEIYPP++RDLV+I DRAY++++ILEME + LQ+++T+P+ + FL+RYLKAAHADKKIVQLSC++ + LQ ML +LPS +A +I +AR+ +GR WSPTL KY +Y E + P + +L AV KK++SS++G VA + LP D
Sbjct: 229 EVTRPKLQLVGVTALLIASKYEEIYPPELRDLVYICDRAYSKNEILEMEEVVLKKLQYQITIPSAHAFLVRYLKAAHADKKIVQLSCYILDGTLQSYNMLHYLPSQLAAASICIARRTVGRNSWSPTLLKYAQYCEEDIKPVARAVLAEKASASTELRAVNKKYTSSRYGGVANLP---LPTDF 409
BLAST of mRNA_H-elongata_contig69178.14566.1 vs. uniprot
Match: A0A7S4AAP4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AAP4_9STRA) HSP 1 Score: 189 bits (480), Expect = 1.270e-53 Identity = 88/175 (50.29%), Postives = 127/175 (72.57%), Query Frame = 1
Query: 10 QVTRQNLQLVGVTAMLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMANALQFRLTVPTIYCFLLRYLKAAHADKKIVQLSCFVAERMLQEVTMLDHLPSVIACCAIYVARKNMGRTCWSPTLEKYTKYNVEHLMPCLTEISRILNLEGGDLEAVKKKFSSSKFGAVATM 534
+V+R LQLVGVT++L+ASKYEEIYPP++RDLV+I DRAY R +I+EME + L++ +T+P+ + FL+RYLKAAHADK+IVQLSCF+ + LQ +L +LPS +A A+++AR+ +GR WSPTL +Y Y E + P + + +L AV KK++SS++GAVA +
Sbjct: 203 EVSRPRLQLVGVTSLLIASKYEEIYPPELRDLVYICDRAYTRKEIIEMEEQILKTLEYNITIPSAHAFLVRYLKAAHADKRIVQLSCFILDGTLQSYNLLHYLPSQLAAAAVFIARRTVGRNSWSPTLLRYAVYREEEIAPVAKAVMAEKSSAAHELRAVNKKYTSSRYGAVANL 377 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69178.14566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig69178.14566.1 >prot_H-elongata_contig69178.14566.1 ID=prot_H-elongata_contig69178.14566.1|Name=mRNA_H-elongata_contig69178.14566.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=172bp MLLASKYEEIYPPQIRDLVFITDRAYNRDQILEMESTMANALQFRLTVPTback to top mRNA from alignment at H-elongata_contig69178:171..2052+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig69178.14566.1 ID=mRNA_H-elongata_contig69178.14566.1|Name=mRNA_H-elongata_contig69178.14566.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1882bp|location=Sequence derived from alignment at H-elongata_contig69178:171..2052+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig69178:171..2052+ >mRNA_H-elongata_contig69178.14566.1 ID=mRNA_H-elongata_contig69178.14566.1|Name=mRNA_H-elongata_contig69178.14566.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1032bp|location=Sequence derived from alignment at H-elongata_contig69178:171..2052+ (Himanthalia elongata Himel1 dioecious)back to top |