mRNA_H-elongata_contig6916.14563.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6916.14563.1
Unique NamemRNA_H-elongata_contig6916.14563.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Match: D7G2L8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2L8_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 3.280e-64
Identity = 121/207 (58.45%), Postives = 145/207 (70.05%), Query Frame = 1
Query:   10 PRRLMVVKCAYIAFCACFGTLARLYTDDIRP-SNTALQGSFLSNSIGSFALGVLEASDLNEDRLGGLYTGLTVGLCGSYTTFSGWNLRIGRVALGNTQG-PTGGIVAAVSIVQTLAFFGVCYVAGQDLVKTLAENGRG----RWRAG---ARGDRDTTVWGAVAGVISVYVLLAILMYVDDNRTRRIHWVASMFAPLGALLRYYLSR 603
            P R MV KCAYI+FCACFGTLARLYTDDI P SN ALQGSFL+NSIGSFALG L +S   E     +Y GLTVG CGSYTT+SGWNLRI R ALG   G P+G IV  VS+  +LAFF  C+ AG D++K +A +GR     R   G   A GD D  V   +  + +VYVLLA+L+ VD+N +RRI W+A +FAP GAL R++LSR
Sbjct:   64 PGRPMVAKCAYISFCACFGTLARLYTDDIGPASNVALQGSFLANSIGSFALGALASSPDRETIPDAMYAGLTVGFCGSYTTYSGWNLRIARAALGQVSGAPSGAIVTIVSMATSLAFFAACFSAGCDVMKQIASHGRRLNIRRMLGGGALAGGDSDA-VRNTLGMLGAVYVLLAVLLGVDNNWSRRIDWLACIFAPFGALSRFFLSR 269          
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Match: F6XSK1_CIOIN (Fluoride export protein 2 n=2 Tax=Ciona intestinalis TaxID=7719 RepID=F6XSK1_CIOIN)

HSP 1 Score: 96.7 bits (239), Expect = 4.630e-20
Identity = 72/210 (34.29%), Postives = 103/210 (49.05%), Query Frame = 1
Query:    7 PPRRLMVVKCAYIAFCACFGTLARLYTDDI-------RPSNTALQGSFLSNSIGSFALGVLEASDLNEDRLGGLYTGLTVGLCGSYTTFSGWNLRIGRVALGNTQGPTGGIVAAVSIVQTL----AFFGVCYVAGQDLVKTLAENGRGRWRAGARGDRDTTVWGAVAGVISVYVLLAILMYVDDNRTRRIHWVASMFAPLGALLRYYLSR 603
            PP+  + +  A+ A C C   L R+ TD I         S   +  SF+SN +GSF LG L AS +   RLG +Y GLT G CGSYTT+S WN ++    +G T   T      +SIV       +F G  Y  G D  K +   GR   +    G + + +  AV  + S      + + VD  +T +  W+A +FAP GA +R YL++
Sbjct:   97 PPQWQLYMHIAFFAMCGC---LCRIGTDKIFGTLAVIENSGEVVNLSFISNMVGSFVLGALNASPMGSTRLGAMYKGLTTGFCGSYTTWSKWNQQLSLALVGETN--TVSQSQVLSIVSWFIGFHSFIG-SYCVGLDFGKDVG--GRIGKKVSPNGPKISNIAVAVL-LFSAAAGFIVGVIVDPTQTGKSIWMAVLFAPFGACIRAYLAK 297          
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Match: H2Y779_CIOSA (Uncharacterized protein n=1 Tax=Ciona savignyi TaxID=51511 RepID=H2Y779_CIOSA)

HSP 1 Score: 89.4 bits (220), Expect = 4.290e-18
Identity = 65/196 (33.16%), Postives = 94/196 (47.96%), Query Frame = 1
Query:   64 GTLARLYTDDI-------RPSNTALQGSFLSNSIGSFALGVLEASDLNEDRLGGLYTGLTVGLCGSYTTFSGWNLRIGRVALGNTQGPTGGIVAAVS--IVQTLAFFGVCYVAGQDLVKTLAENGRGRWRAGARGDRDTTVWGAVAGVISVYVLLA-------ILMYVDDNRTRRIHWVASMFAPLGALLRYYLSR 603
            G L R+ TD I         S   +  SF+SN +GSF LG L AS +   RLG +Y GLT G CGSYTT+S WN ++    +G     +   V ++    V   +F G  Y  G D  K +          G R  +  +  G     I+V++LL        + + VD  +T +  W+A +FAP GA +R YL++
Sbjct:    3 GCLCRIGTDQIFGKLAKIESSAAVVNLSFVSNMVGSFVLGALNASPMGSTRLGAMYKGLTTGFCGSYTTWSKWNQQLSLTLVGGANAASQSQVLSILSWFVGFHSFIG-SYCVGLDFGKDI----------GGRIGKKVSPNGPKISNIAVFLLLVGAVIGFIVGVVVDPTQTGKQIWMAVLFAPFGASIRAYLAK 187          
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Match: A0A836C7N9_9STRA (CrcB-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7N9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.710e-14
Identity = 71/215 (33.02%), Postives = 104/215 (48.37%), Query Frame = 1
Query:    4 QPPRRLMVVKCAYIAFCACFGTLARLYTD--------DIRPSNTALQGSFLSNSIGSFALGVLEASDLNEDRLGG---LYTGLTVGLCGSYTTFSGWNLRIGRVALGNTQG-PTGGIVAAVSIVQTLAFFGVCYVAGQDLVKTLAENGRGRWRAGARGDRDTTVWGAVAGVISVYVL--LAILMYVDDNR-TRRIHWVASMFAPLGALLRYYLSR 603
            QP    +V     +A  A  G  AR++T+        D+  ++T L  SF  N  GS  LG L A+     + GG   L TG++VGLCG+YTTFS W L+   + +  T   P   I A   I  ++A F V +  G D+   L     G  +  A G  +  +   V GV+ V     L+I + V+DN    + +W++ +FA  GA LRY L+R
Sbjct:   89 QPQEPSVVNLYVSVALWAIAGCYARIFTERLFGSTAADVIDADTLLVPSFFDNVAGSMILGFLVAASTTMSKGGGALVLLTGMSVGLCGAYTTFSAWTLQTNALLIAPTSDVPQPQIAALCYIFASIATFIVAHRVGADVGALLT----GAVQKAAPGISEGII-AIVNGVLLVATAIGLSIALGVNDNSWLEKRYWLSGLFAIPGASLRYALAR 298          
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Match: A0A1Y2FQS7_PROLT (CrcB-like protein-domain-containing protein n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FQS7_PROLT)

HSP 1 Score: 70.9 bits (172), Expect = 5.250e-11
Identity = 67/215 (31.16%), Postives = 100/215 (46.51%), Query Frame = 1
Query:    7 PPRRLMVV-KCAYIAFCACFGTLARLYTDDIR--PSNTALQGSFLSNSIGSFALGVLEASDL--NEDRLGGLYTGLTVGLCGSYTTFSGWNLRI---------GRVALGNTQGPTG-GIVAAVSIVQTLAFFGVCYVAGQDLVKTLAEN-GRGRWRAGARGDRDTTVWGAVAGVISVYVLLAILMYVDDNRTRRIHWVASMFAPLGALLRYYLSR 603
            P R L V+ +CA+I   +  GTL+RL   ++   P N  +     +  +G   +G L+   +    +R   L+TGLTVG CGS TTFSGW L              + G + G    G++A ++   TLAF  V +  GQ     LA    + R        R      A+  +++  V++A+   VD    RR + +A    P GALLRY LS+
Sbjct:   18 PSRALQVIHECAWIGLLSLLGTLSRLALVELNTYPGNL-IPALVWAQFVGCAVMGFLKHDQVFFQPNRHKALFTGLTVGFCGSLTTFSGWLLACFTALSDYGTSEASAGRSTGYNAIGLIAQLT--TTLAFSIVGFKLGQHAADGLASIFPKARLTFPQATTRTAVCITALLALLAQAVVIAVAASVDHTSWRRRYTLALAMTPTGALLRYLLSQ 229          
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Match: A0A8H7BR82_9FUNG (CP-type G domain-containing protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BR82_9FUNG)

HSP 1 Score: 57.0 bits (136), Expect = 4.870e-6
Identity = 61/191 (31.94%), Postives = 93/191 (48.69%), Query Frame = 1
Query:   64 GTLARLYTDDIRPSNTA-LQGSFLSNSIGSFALGVLEASDLNEDRLG-GLYTGLTVGLCGSYTTFSGWNLRIGRVALGNTQGP---TG-GIVAAVSIVQTLAFFGVC-----YVAGQDLVKTLAENGRGRWRAGARGDRDTTVWGAVAGVISVYVLLAILMYVDDNRTRRIHWVASMFAPLGALLRYYLSR 603
            GTL R+    +   N A + G   +  IG F +GV+  S +   +    L+TGL+ GLCGS TTFS W L I +    N  G    TG  I+AA+S +       +C     Y AG+  + T+ +  R +  A     R    +     +  V   +A++M      +RR   ++ +FAP+GALLR+YL+R
Sbjct:   85 GTLIRVGLQSLETYNGAPVFGLVYAQWIGCFIMGVVVWSKIKLLQWYLPLHTGLSTGLCGSITTFSSWQLDIFK-EFSNYHGADHATGYNILAAISQLLVTIAVSLCGLQFGYHAGK--LWTVEKEKRTKIVACGYSLRRLKAYDYCIMIFGVLSWVAVVMAAIFTPSRRDVALSCVFAPVGALLRWYLAR 272          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6916.14563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2L8_ECTSI3.280e-6458.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F6XSK1_CIOIN4.630e-2034.29Fluoride export protein 2 n=2 Tax=Ciona intestinal... [more]
H2Y779_CIOSA4.290e-1833.16Uncharacterized protein n=1 Tax=Ciona savignyi Tax... [more]
A0A836C7N9_9STRA2.710e-1433.02CrcB-like protein-domain-containing protein n=1 Ta... [more]
A0A1Y2FQS7_PROLT5.250e-1131.16CrcB-like protein-domain-containing protein n=1 Ta... [more]
A0A8H7BR82_9FUNG4.870e-631.94CP-type G domain-containing protein n=1 Tax=Apophy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6916contigH-elongata_contig6916:728..1333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score102.1
Seed ortholog evalue3.2e-19
Seed eggNOG ortholog7719.XP_002131803.1
KEGG koko:K06199
KEGG TC1.A.43.1,1.A.43.2,1.A.43.3
EggNOG free text desc.CrcB-like protein, Camphor Resistance (CrcB)
EggNOG OGs2QT5F@2759,39IFP@33154,3C3JJ@33208,COG0239@1
COG Functional cat.D
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPutative fluoride ion transporter CrcB
Ec32 orthologEc-11_002710.1
Exons1
Model size606
Cds size606
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.7722204-CDS-H-elongata_contig6916:727..13331622931088.7722204-CDS-H-elongata_contig6916:727..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6916 728..1333 -
1691679693.2264023-CDS-H-elongata_contig6916:727..13331691679693.2264023-CDS-H-elongata_contig6916:727..1333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6916 728..1333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6916.14563.1prot_H-elongata_contig6916.14563.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6916 728..1333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6916.14563.1

>prot_H-elongata_contig6916.14563.1 ID=prot_H-elongata_contig6916.14563.1|Name=mRNA_H-elongata_contig6916.14563.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=202bp
MQPPRRLMVVKCAYIAFCACFGTLARLYTDDIRPSNTALQGSFLSNSIGS
FALGVLEASDLNEDRLGGLYTGLTVGLCGSYTTFSGWNLRIGRVALGNTQ
GPTGGIVAAVSIVQTLAFFGVCYVAGQDLVKTLAENGRGRWRAGARGDRD
TTVWGAVAGVISVYVLLAILMYVDDNRTRRIHWVASMFAPLGALLRYYLS
R*
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mRNA from alignment at H-elongata_contig6916:728..1333-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6916.14563.1 ID=mRNA_H-elongata_contig6916.14563.1|Name=mRNA_H-elongata_contig6916.14563.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=606bp|location=Sequence derived from alignment at H-elongata_contig6916:728..1333- (Himanthalia elongata Himel1 dioecious)
ATGCAACCACCAAGACGACTGATGGTCGTCAAATGTGCCTACATCGCCTT CTGTGCATGCTTCGGGACGCTGGCCCGTCTCTACACTGACGATATCCGGC CTTCTAACACCGCTCTGCAAGGCTCCTTCCTCAGCAACTCAATCGGAAGC TTCGCCCTTGGCGTCCTCGAGGCCTCCGACCTCAACGAAGACCGCCTGGG AGGTCTGTATACTGGGCTGACCGTTGGCTTGTGTGGCTCTTACACCACCT TTTCCGGCTGGAATCTCCGAATAGGGCGAGTTGCCCTCGGGAACACCCAA GGTCCAACGGGCGGGATCGTCGCCGCCGTTTCCATCGTCCAAACATTGGC CTTTTTCGGCGTCTGCTACGTCGCCGGCCAGGACTTGGTGAAGACCCTGG CGGAGAACGGACGTGGCCGCTGGAGGGCGGGGGCACGAGGTGACCGAGAC ACGACGGTGTGGGGCGCGGTCGCGGGGGTGATATCGGTGTATGTCCTGCT GGCCATTCTGATGTACGTGGACGATAATAGGACAAGGCGGATCCACTGGG TGGCGTCTATGTTTGCTCCTCTCGGAGCTCTGCTGAGGTATTATCTGTCT AGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig6916:728..1333-

>mRNA_H-elongata_contig6916.14563.1 ID=mRNA_H-elongata_contig6916.14563.1|Name=mRNA_H-elongata_contig6916.14563.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1212bp|location=Sequence derived from alignment at H-elongata_contig6916:728..1333- (Himanthalia elongata Himel1 dioecious)
ATGCAACCACCAAGACGACTGATGGTCGTCAAATGTGCCTACATCGCCTT
CTGTGCATGCTTCGGGACGCTGGCCCGTCTCTACACTGACGATATCCGGC
CTTCTAACACCGCTCTGCAAGGCTCCTTCCTCAGCAACTCAATCGGAAGC
TTCGCCCTTGGCGTCCTCGAGGCCTCCGACCTCAACGAAGACCGCCTGGG
AGGTCTGTATACTGGGCTGACCGTTGGCTTGTGTGGCTCTTACACCACCT
TTTCCGGCTGGAATCTCCGAATAGGGCGAGTTGCCCTCGGGAACACCCAA
GGTCCAACGGGCGGGATCGTCGCCGCCGTTTCCATCGTCCAAACATTGGC
CTTTTTCGGCGTCTGCTACGTCGCCGGCCAGGACTTGGTGAAGACCCTGG
CGGAGAACGGACGTGGCCGCTGGAGGGCGGGGGCACGAGGTGACCGAGAC
ACGACGGTGTGGGGCGCGGTCGCGGGGGTGATATCGGTGTATGTCCTGCT
GGCCATTCTGATGTACGTGGACGATAATAGGACAAGGCGGATCCACTGGG
TGGCGTCTATGTTTGCTCCTCTCGGAGCTCTGCTGAGGTATTATCTGTCT
AGGTGAATGCAACCACCAAGACGACTGATGGTCGTCAAATGTGCCTACAT
CGCCTTCTGTGCATGCTTCGGGACGCTGGCCCGTCTCTACACTGACGATA
TCCGGCCTTCTAACACCGCTCTGCAAGGCTCCTTCCTCAGCAACTCAATC
GGAAGCTTCGCCCTTGGCGTCCTCGAGGCCTCCGACCTCAACGAAGACCG
CCTGGGAGGTCTGTATACTGGGCTGACCGTTGGCTTGTGTGGCTCTTACA
CCACCTTTTCCGGCTGGAATCTCCGAATAGGGCGAGTTGCCCTCGGGAAC
ACCCAAGGTCCAACGGGCGGGATCGTCGCCGCCGTTTCCATCGTCCAAAC
ATTGGCCTTTTTCGGCGTCTGCTACGTCGCCGGCCAGGACTTGGTGAAGA
CCCTGGCGGAGAACGGACGTGGCCGCTGGAGGGCGGGGGCACGAGGTGAC
CGAGACACGACGGTGTGGGGCGCGGTCGCGGGGGTGATATCGGTGTATGT
CCTGCTGGCCATTCTGATGTACGTGGACGATAATAGGACAAGGCGGATCC
ACTGGGTGGCGTCTATGTTTGCTCCTCTCGGAGCTCTGCTGAGGTATTAT
CTGTCTAGGTGA
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