mRNA_H-elongata_contig69153.14562.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69153.14562.1
Unique NamemRNA_H-elongata_contig69153.14562.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69153.14562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69153contigH-elongata_contig69153:230..575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_003430.1
Exons1
Model size347
Cds size159
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.6832962-UTR-H-elongata_contig69153:229..4161622931088.6832962-UTR-H-elongata_contig69153:229..416Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69153 230..416 +
1691679693.2043457-UTR-H-elongata_contig69153:229..4161691679693.2043457-UTR-H-elongata_contig69153:229..416Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69153 230..416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.7043843-CDS-H-elongata_contig69153:416..5751622931088.7043843-CDS-H-elongata_contig69153:416..575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69153 417..575 +
1691679693.2164824-CDS-H-elongata_contig69153:416..5751691679693.2164824-CDS-H-elongata_contig69153:416..575Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69153 417..575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69153.14562.1prot_H-elongata_contig69153.14562.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69153 417..575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69153.14562.1

>prot_H-elongata_contig69153.14562.1 ID=prot_H-elongata_contig69153.14562.1|Name=mRNA_H-elongata_contig69153.14562.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
MAMFAKSKRFQDETYGSELGPGDYNPTSPKPSAAGAVSLAFTSPKGLPNS
MRE
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mRNA from alignment at H-elongata_contig69153:230..575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69153.14562.1 ID=mRNA_H-elongata_contig69153.14562.1|Name=mRNA_H-elongata_contig69153.14562.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=346bp|location=Sequence derived from alignment at H-elongata_contig69153:230..575+ (Himanthalia elongata Himel1 dioecious)
CAGCGATCAGTCTCTGATTTTAGCTTCTTTGCAGATCAAGTACCCCGATC
GAGTCCGAAGACCCCCGGCGATCTCTGGTAGAACGCACCGATATCGTTCA
TGTCCACCACGCTTGATAGCTCTAAGTAGCAACTGAAAATTGGTTTGTTG
TCCGTTGGTAATTTTATTCGGCGCCACAGCTGCAGCCATGGCCATGTTCG
CCAAGTCGAAGCGCTTCCAGGACGAGACATACGGGTCAGAACTTGGCCCC
GGTGACTACAACCCTACGTCTCCCAAGCCTAGTGCGGCTGGAGCCGTGAG
TCTGGCATTCACCTCCCCGAAGGGTCTGCCGAACTCAATGAGAGAG
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Coding sequence (CDS) from alignment at H-elongata_contig69153:230..575+

>mRNA_H-elongata_contig69153.14562.1 ID=mRNA_H-elongata_contig69153.14562.1|Name=mRNA_H-elongata_contig69153.14562.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig69153:230..575+ (Himanthalia elongata Himel1 dioecious)
ATGGCCATGTTCGCCAAGTCGAAGCGCTTCCAGGACGAGACATACGGGTC
AGAACTTGGCCCCGGTGACTACAACCCTACGTCTCCCAAGCCTAGTGCGG
CTGGAGCCGTGAGTCTGGCATTCACCTCCCCGAAGGGTCTGCCGAACTCA
ATGAGAGAGATGGCCATGTTCGCCAAGTCGAAGCGCTTCCAGGACGAGAC
ATACGGGTCAGAACTTGGCCCCGGTGACTACAACCCTACGTCTCCCAAGC
CTAGTGCGGCTGGAGCCGTGAGTCTGGCATTCACCTCCCCGAAGGGTCTG
CCGAACTCAATGAGAGAG
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