mRNA_H-elongata_contig69142.14560.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69142.14560.1
Unique NamemRNA_H-elongata_contig69142.14560.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69142.14560.1 vs. uniprot
Match: A0A835YS22_9STRA (Putative endoplasmic oxidoreductin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS22_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 4.120e-14
Identity = 38/61 (62.30%), Postives = 52/61 (85.25%), Query Frame = 1
Query:    1 QLWGKLETLGLGTALKIMLFSSGEEGQKDLASLTRNELIALVNTAAQLAKSVGSVPQWRWL 183
            ++WGKLETLG+GTA+KI+L S   E  +++  L+RNE+IALVNTAAQLAKSVG+VP+++ L
Sbjct:  440 KMWGKLETLGIGTAIKILLAS---ESCEEVQDLSRNEVIALVNTAAQLAKSVGTVPKFKRL 497          
BLAST of mRNA_H-elongata_contig69142.14560.1 vs. uniprot
Match: A0A7S3NI84_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NI84_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.130e-11
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 QLWGKLETLGLGTALKIMLFSSGEEGQKDLASLTRNELIALVNTAAQLAKSVGSVPQWR 177
            +LWG L+ LGLGTALKI+     E G   L SL RNE++AL+NT AQLAKSV SV  W+
Sbjct:  418 RLWGTLQVLGLGTALKILFLQGDESG---LGSLQRNEVVALINTLAQLAKSVDSVRLWQ 473          
BLAST of mRNA_H-elongata_contig69142.14560.1 vs. uniprot
Match: A0A7S2Y4A3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4A3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.630e-11
Identity = 38/61 (62.30%), Postives = 46/61 (75.41%), Query Frame = 1
Query:    1 QLWGKLETLGLGTALKIMLFSSGEEGQKDLASLTRNELIALVNTAAQLAKSVGSVPQWRWL 183
            ++WGKL+TLGLGTALKI+L +  + G     SL RNE+IALVNTA QLA+SV SV  WR L
Sbjct:  134 KMWGKLQTLGLGTALKILL-TPEQVGY----SLQRNEVIALVNTATQLARSVHSVQFWRQL 189          
BLAST of mRNA_H-elongata_contig69142.14560.1 vs. uniprot
Match: F0Y872_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y872_AURAN)

HSP 1 Score: 65.1 bits (157), Expect = 9.920e-11
Identity = 35/59 (59.32%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 QLWGKLETLGLGTALKIMLFSSGEEGQKDLASLTRNELIALVNTAAQLAKSVGSVPQWR 177
            +LWGKL+ LGLGTALKI+L      G   L  L RNE++ALVNT AQLAKSV S+  W+
Sbjct:  337 RLWGKLQILGLGTALKILLADGDAFG---LGVLQRNEVVALVNTLAQLAKSVDSIRAWQ 392          
BLAST of mRNA_H-elongata_contig69142.14560.1 vs. uniprot
Match: A0A8J2SP79_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP79_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.890e-10
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 QLWGKLETLGLGTALKIMLFSSGEEGQKDLASLTRNELIALVNTAAQLAKSVGSVPQWR 177
            +LWGKL+ LGLGTALKI+L      G      L RNE++ALVNT AQLAKSV S+  W+
Sbjct:  435 RLWGKLQVLGLGTALKILLMEGDVLGY---GVLQRNEVVALVNTLAQLAKSVDSIRDWQ 490          
BLAST of mRNA_H-elongata_contig69142.14560.1 vs. uniprot
Match: A0A7S2DCT6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCT6_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.570e-10
Identity = 35/59 (59.32%), Postives = 44/59 (74.58%), Query Frame = 1
Query:    1 QLWGKLETLGLGTALKIMLFSSGEEGQKDLASLTRNELIALVNTAAQLAKSVGSVPQWR 177
            +LWGKL+ LG+GTALKI++ S  EEG+    +L RNE IAL+NT AQL+ SV SV  WR
Sbjct:  410 RLWGKLQVLGIGTALKILM-SREEEGE---ITLQRNEAIALLNTLAQLSTSVQSVQLWR 464          
BLAST of mRNA_H-elongata_contig69142.14560.1 vs. uniprot
Match: A0A3S3MIJ9_9MAGN (Endoplasmic reticulum oxidoreductin-1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MIJ9_9MAGN)

HSP 1 Score: 59.3 bits (142), Expect = 1.090e-8
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:    1 QLWGKLETLGLGTALKIMLFSSGEEGQKDLASLTRNELIALVNTAAQLAKSVGSVPQW 174
            +LWGKL+ LGLGTALKI+   +G E       L RNE+IALVN   +L++SV  V +W
Sbjct:  378 RLWGKLQVLGLGTALKILFSVNGHEHLNQSLQLQRNEVIALVNLLNRLSESVKLVHEW 435          
BLAST of mRNA_H-elongata_contig69142.14560.1 vs. uniprot
Match: A0A5D6YAX0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YAX0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.100e-8
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    1 QLWGKLETLGLGTALKIMLFSSGEEGQKDLASLTRNELIALVNTAAQLAKSVGSVPQWRWL 183
            +LWGK++T+GLGTA+KI+L    ++    L  L RNELIAL+N A  LA+SV  V  +R L
Sbjct:  431 RLWGKIQTMGLGTAIKILLADDVDK----LPRLNRNELIALINVATNLARSVDGVTMFRHL 487          
BLAST of mRNA_H-elongata_contig69142.14560.1 vs. uniprot
Match: W7U2W8_9STRA (Endoplasmic oxidoreductin-2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2W8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.500e-8
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 1
Query:    1 QLWGKLETLGLGTALKIMLFSSGEEGQKDLASLTRNELIALVNTAAQLAKSVGSVPQWRWL 183
            +LWGKL+ LGLGTA+KI+L    +   +   S  RNE+I+L+NTA QLAKSV +V  ++ L
Sbjct:  399 RLWGKLQILGLGTAIKIVLGRPEDRTLEGSLSFQRNEVISLINTAHQLAKSVKAVENFQKL 459          
BLAST of mRNA_H-elongata_contig69142.14560.1 vs. uniprot
Match: A0A662XRG5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XRG5_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.500e-8
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 QLWGKLETLGLGTALKIMLFSSGEEGQKDLASLTRNELIALVNTAAQLAKSVGSVPQWRWLGEYE 195
            QLWGKL+T+GLGTA+KI+L     E    +  L RNELIAL+N A  L++SV  V   R L  +E
Sbjct:  434 QLWGKLQTMGLGTAIKILL----AEDVAAMPKLNRNELIALINVANNLSRSVDGVKMMRDLEFFE 494          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69142.14560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YS22_9STRA4.120e-1462.30Putative endoplasmic oxidoreductin n=1 Tax=Tribone... [more]
A0A7S3NI84_9STRA1.130e-1159.32Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2Y4A3_9STRA2.630e-1162.30Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
F0Y872_AURAN9.920e-1159.32Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SP79_9STRA1.890e-1057.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2DCT6_9STRA6.570e-1059.32Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3S3MIJ9_9MAGN1.090e-851.72Endoplasmic reticulum oxidoreductin-1 n=1 Tax=Cinn... [more]
A0A5D6YAX0_9STRA1.100e-850.82Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
W7U2W8_9STRA1.500e-850.82Endoplasmic oxidoreductin-2 n=2 Tax=Monodopsidacea... [more]
A0A662XRG5_9STRA1.500e-850.77Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69142contigH-elongata_contig69142:117..314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog44056.XP_009036749.1
Preferred nameERO1LB
KEGG koko:K10950,ko:K10976
KEGG Pathwayko04141,ko05110,map04141,map05110
GOsGO:0001666,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0006082,GO:0006457,GO:0006458,GO:0006464,GO:0006508,GO:0006518,GO:0006520,GO:0006575,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006915,GO:0006950,GO:0006979,GO:0006986,GO:0007154,GO:0007165,GO:0007204,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008219,GO:0008593,GO:0009266,GO:0009628,GO:0009966,GO:0009987,GO:0010033,GO:0010260,GO:0010467,GO:0010646,GO:0010817,GO:0012501,GO:0012505,GO:0015035,GO:0015036,GO:0016020,GO:0016021,GO:0016043,GO:0016485,GO:0016486,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016972,GO:0019471,GO:0019538,GO:0019725,GO:0019752,GO:0022417,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030070,GO:0030154,GO:0030176,GO:0030198,GO:0030425,GO:0030968,GO:0031224,GO:0031227,GO:0031974,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0033500,GO:0033554,GO:0034220,GO:0034599,GO:0034620,GO:0034641,GO:0034975,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036477,GO:0042175,GO:0042221,GO:0042445,GO:0042592,GO:0042593,GO:0042995,GO:0043005,GO:0043062,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045444,GO:0045454,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050873,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051179,GO:0051209,GO:0051234,GO:0051282,GO:0051283,GO:0051480,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0055114,GO:0060401,GO:0060402,GO:0061077,GO:0065007,GO:0065008,GO:0070013,GO:0070059,GO:0070482,GO:0070588,GO:0070838,GO:0070887,GO:0071310,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0097190,GO:0097193,GO:0097447,GO:0097458,GO:0097553,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098827,GO:0120025,GO:0120038,GO:0140096,GO:1901142,GO:1901564,GO:1901605
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsCOG5061@1,KOG2608@2759
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.5588043-CDS-H-elongata_contig69142:116..3141622931088.5588043-CDS-H-elongata_contig69142:116..314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69142 117..314 -
1691679693.1845853-CDS-H-elongata_contig69142:116..3141691679693.1845853-CDS-H-elongata_contig69142:116..314Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69142 117..314 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69142.14560.1prot_H-elongata_contig69142.14560.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69142 117..314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69142.14560.1

>prot_H-elongata_contig69142.14560.1 ID=prot_H-elongata_contig69142.14560.1|Name=mRNA_H-elongata_contig69142.14560.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
QLWGKLETLGLGTALKIMLFSSGEEGQKDLASLTRNELIALVNTAAQLAK
SVGSVPQWRWLGEYE*
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mRNA from alignment at H-elongata_contig69142:117..314-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69142.14560.1 ID=mRNA_H-elongata_contig69142.14560.1|Name=mRNA_H-elongata_contig69142.14560.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig69142:117..314- (Himanthalia elongata Himel1 dioecious)
CAGCTCTGGGGAAAGTTGGAAACTCTTGGATTGGGCACGGCCCTCAAGAT CATGTTGTTTTCTTCTGGGGAGGAGGGACAGAAGGACTTGGCCTCCCTCA CCAGGAACGAGCTGATCGCCCTTGTTAACACCGCAGCGCAGCTTGCCAAG AGCGTCGGCAGCGTGCCCCAATGGAGATGGCTGGGTGAGTATGAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig69142:117..314-

>mRNA_H-elongata_contig69142.14560.1 ID=mRNA_H-elongata_contig69142.14560.1|Name=mRNA_H-elongata_contig69142.14560.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig69142:117..314- (Himanthalia elongata Himel1 dioecious)
CAGCTCTGGGGAAAGTTGGAAACTCTTGGATTGGGCACGGCCCTCAAGAT
CATGTTGTTTTCTTCTGGGGAGGAGGGACAGAAGGACTTGGCCTCCCTCA
CCAGGAACGAGCTGATCGCCCTTGTTAACACCGCAGCGCAGCTTGCCAAG
AGCGTCGGCAGCGTGCCCCAATGGAGATGGCTGGGTGAGTATGAATGACA
GCTCTGGGGAAAGTTGGAAACTCTTGGATTGGGCACGGCCCTCAAGATCA
TGTTGTTTTCTTCTGGGGAGGAGGGACAGAAGGACTTGGCCTCCCTCACC
AGGAACGAGCTGATCGCCCTTGTTAACACCGCAGCGCAGCTTGCCAAGAG
CGTCGGCAGCGTGCCCCAATGGAGATGGCTGGGTGAGTATGAATGA
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