mRNA_H-elongata_contig69109.14558.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69109.14558.1
Unique NamemRNA_H-elongata_contig69109.14558.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A6H5KX88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX88_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.330e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 3 
Query:  174 MTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 311
            +TFMQHD GLDRRL+KAVAKMGFVYPTLVQ K IPLAL+GKDLLVR
Sbjct:   43 LTFMQHDFGLDRRLVKAVAKMGFVYPTLVQNKCIPLALRGKDLLVR 88
[Close]
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: D7FNE7_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.440e-14
Identity = 40/46 (86.96%), Postives = 43/46 (93.48%), Query Frame = 3 
Query:  174 MTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 311
            +TFMQHD GLDRRL+KAVAKMGFVYPTLVQ K IPLAL+GKDLLVR
Sbjct:   45 LTFMQHDFGLDRRLVKAVAKMGFVYPTLVQNKCIPLALRGKDLLVR 90
[Close]
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A835ZDE1_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDE1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.820e-13
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:  165 DQPMTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 311
            DQ  TF QHD GLDRRLIKA AK GF+YPTLVQ K IPLAL+GKDLLVR
Sbjct:    8 DQAKTFAQHDFGLDRRLIKACAKAGFIYPTLVQSKCIPLALKGKDLLVR 56
[Close]
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A4D9D1T0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1T0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.500e-11
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:  177 TFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 311
            TF   D GLDRRLIKAV++MGF+YPTLVQ K+IPLA++GKDLLVR
Sbjct:    9 TFSAFDFGLDRRLIKAVSRMGFIYPTLVQSKAIPLAMEGKDLLVR 53
[Close]
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A7S3H840_9STRA (ATP-dependent RNA helicase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H840_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.440e-11
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 3 
Query:  165 DQPMTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 311
            D+  T+MQ D GLDRRL+KA++K+GF YPTLVQ K IP+ +QGKD+LVR
Sbjct:   17 DEEKTWMQRDFGLDRRLVKALSKLGFTYPTLVQAKCIPIIVQGKDVLVR 65
[Close]
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: W7TVX7_9STRA (Putative atp-dependent rna helicase ddx56 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TVX7_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.600e-11
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:  177 TFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 311
            TF   D GLDRRLIKAV++MGF+YPTLVQ K+IPLA++GKDLLVR
Sbjct:    9 TFSAFDFGLDRRLIKAVSRMGFIYPTLVQSKAIPLAMEGKDLLVR 53
[Close]
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A7S1XXZ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXZ4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.830e-9
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 3 
Query:  153 QAPEDQPMTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 311
            +A  D+ +TF   D GLD RL+KA  ++GFV PTLVQ + IPLAL GKDLLVR
Sbjct:   30 EATPDEELTFAGSDWGLDGRLLKACMRLGFVRPTLVQAQCIPLALAGKDLLVR 82
[Close]
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A482SEZ2_9ARCH (DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SEZ2_9ARCH)

HSP 1 Score: 65.5 bits (158), Expect = 7.370e-9
Identity = 30/52 (57.69%), Postives = 41/52 (78.85%), Query Frame = 3 
Query:  156 APEDQPMTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 311
            +P D    ++Q+   LDRRL+KA++K+GF YPTLVQ K +PLAL+GKDL+VR
Sbjct:   45 SPFDTSTPWLQNAYQLDRRLLKAISKLGFTYPTLVQAKCVPLALEGKDLMVR 96
[Close]
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A7R9UC43_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UC43_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.950e-8
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 3 
Query:  159 PEDQPMTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVR 311
            PE  P TF   D GLD RL+KAV ++GFV PTLVQ + IPLALQGKDLLVR
Sbjct:    6 PETSP-TFATSDWGLDPRLLKAVMRLGFVRPTLVQSQCIPLALQGKDLLVR 55
[Close]
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Match: A0A662YEI0_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YEI0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.480e-8
Identity = 43/96 (44.79%), Postives = 54/96 (56.25%), Query Frame = 3 
Query:  141 LEGQQAPEDQPMTFMQHDMGLDRRLIKAVAKMGFVYPTLVQCKSIPLALQGKDLLVRFVFYSSVSV*RSRVESWRCPRVTQGISLHSDVATRAIAI 428
            L+GQQ        F  ++ GLDRRL KAVAKM FV+ TLVQ   IPLALQGKDLLVR    S       +  ++  P + + + L  D AT   A+
Sbjct:   13 LDGQQP-------FAAYEFGLDRRLTKAVAKMRFVHATLVQVHCIPLALQGKDLLVRARTGSG------KTAAFALPLLHKILQLKQDAATSEPAV 95
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69109.14558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KX88_9PHAE1.330e-1486.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNE7_ECTSI1.440e-1486.96DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A835ZDE1_9STRA2.820e-1379.59DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A4D9D1T0_9STRA2.500e-1175.56Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3H840_9STRA3.440e-1165.31ATP-dependent RNA helicase (Fragment) n=1 Tax=Spum... [more]
W7TVX7_9STRA3.600e-1175.56Putative atp-dependent rna helicase ddx56 n=1 Tax=... [more]
A0A7S1XXZ4_9STRA2.830e-960.38Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A482SEZ2_9ARCH7.370e-957.69DEAD/DEAH box helicase n=1 Tax=archaeon TaxID=1906... [more]
A0A7R9UC43_9STRA1.950e-868.63Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A662YEI0_9STRA3.480e-844.79Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69109contigH-elongata_contig69109:1662..2965 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue4.9e-14
Seed eggNOG ortholog2880.D7FNE7
Preferred nameDDX56
KEGG koko:K14810
GOsGO:0000463,GO:0000470,GO:0003674,GO:0003676,GO:0003678,GO:0003723,GO:0003724,GO:0003729,GO:0003824,GO:0004003,GO:0004004,GO:0004386,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007399,GO:0008026,GO:0008094,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0010720,GO:0010975,GO:0010976,GO:0016043,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022613,GO:0030154,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033677,GO:0033680,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042273,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046483,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051276,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0070013,GO:0070035,GO:0071103,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0120035,GO:0140097,GO:0140098,GO:1901360,GO:1901363,GO:2000026
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0346@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size737
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69109.14558.1prot_H-elongata_contig69109.14558.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69109 2318..2569 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.4064476-UTR-H-elongata_contig69109:1661..16921622931088.4064476-UTR-H-elongata_contig69109:1661..1692Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69109 1662..1692 +
1691679693.1166606-UTR-H-elongata_contig69109:1661..16921691679693.1166606-UTR-H-elongata_contig69109:1661..1692Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69109 1662..1692 +
1622931088.423209-UTR-H-elongata_contig69109:2259..23171622931088.423209-UTR-H-elongata_contig69109:2259..2317Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69109 2260..2317 +
1691679693.1304579-UTR-H-elongata_contig69109:2259..23171691679693.1304579-UTR-H-elongata_contig69109:2259..2317Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69109 2260..2317 +
1622931088.4640174-UTR-H-elongata_contig69109:2569..29651622931088.4640174-UTR-H-elongata_contig69109:2569..2965Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69109 2570..2965 +
1691679693.146394-UTR-H-elongata_contig69109:2569..29651691679693.146394-UTR-H-elongata_contig69109:2569..2965Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69109 2570..2965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.4410448-CDS-H-elongata_contig69109:2317..25691622931088.4410448-CDS-H-elongata_contig69109:2317..2569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69109 2318..2569 +
1691679693.1383371-CDS-H-elongata_contig69109:2317..25691691679693.1383371-CDS-H-elongata_contig69109:2317..2569Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69109 2318..2569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69109.14558.1

>prot_H-elongata_contig69109.14558.1 ID=prot_H-elongata_contig69109.14558.1|Name=mRNA_H-elongata_contig69109.14558.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MPSLRNEGKRRRDEVERLEGQQAPEDQPMTFMQHDMGLDRRLIKAVAKMG
FVYPTLVQCKSIPLALQGKDLLVRFVFYSSVSV*
back to top

mRNA from alignment at H-elongata_contig69109:1662..2965+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69109.14558.1 ID=mRNA_H-elongata_contig69109.14558.1|Name=mRNA_H-elongata_contig69109.14558.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1304bp|location=Sequence derived from alignment at H-elongata_contig69109:1662..2965+ (Himanthalia elongata Himel1 dioecious)
CTCTAGTGCCCATCGTGTAAGCAACAAGCAAGTGAGCCCATCGCGTGTAT
TAATTCGTACTTTTCATCGCCTTCATCTTCCTTCAAGCAACAGACCATTA
GCTTCTGTAAAGTATTAAATGTATTCGTTTGGTTGAGACGGTAGCAGCAA
GCGATGTAGAAAATATGACTAGCAGACACGAAGAGGTGTGTGGCCCTTGG
CTTCCGTTCGGCTTGAACCTCCGGTGGGCCACGGCTCCAATATTATGGCG
GTAAACGTTCTCGTCACACCTTGTCGTTGCAAGTACTAGATGGATGAAAC
TCTGGATAGTAAAGGTAGCGCTCGATGGGCACTGGAAGGATGCCCCAGCC
ACACCCTGAGTCGGAGATCGTGACGTTGTCAGGACTTGGAGCCCGAACTT
TAATTCTCAGAATACCGTACCTACGATCATATCTGAAGAGCAAAGCCGTG
TGCAGCTGACAACATATTGTTAGGTGCATCCGTACGATGTGGTATACCTC
TGTACAGGTAGCAATTTGATAGTTTCTTGAGCCTTTCTAGTCTTTTGCGC
CGCCGACCTCTGCCTCTGCTGCCCAAAATCCTTTGATTTCCCACGAAGGC
AAAAACAGCTGGCTGGGAAAACCTACTGTAAACGACTTGGGCATACAACA
TATATCATGCCCTCCCTCAGAAATGAAGGGAAGCGGCGACGTGACGAGGT
CGAGCGCCTTGAAGGCCAACAGGCGCCGGAAGACCAACCGATGACGTTTA
TGCAGCACGACATGGGTTTGGACCGGAGGCTGATCAAAGCGGTCGCCAAG
ATGGGTTTTGTTTATCCTACCCTCGTCCAGTGCAAGAGCATCCCCTTGGC
GCTGCAGGGGAAAGATCTGCTGGTGCGTTTCGTTTTTTATTCAAGTGTAT
CAGTTTGAAGAAGTCGGGTCGAGTCCTGGCGTTGCCCCCGGGTAACGCAG
GGCATAAGCTTGCATTCTGATGTAGCTACAAGAGCGATTGCCATATAAGC
GAATCATGAGACTACTGAGTACGGAGATGCAGCAAGATGCCGGAATCGGT
GCGATCCCGACGTGGGCCGACCCTTCCACTACGACGGTAATATATAACAT
CAACTTCGAGCAATGTATGTTGTGTTTGTCTGTAGTCAGCCCATTGAATC
TGGACTTGAGGCTTGTGGACCGCACCAGACGGGGGTCACCGCCTCTGCAA
CCGTCATGCCCATTCTACCCATAGTGGGTGTGGGAAAATAGAGGCGTACA
ATAATTGGTCCATGGGGTTACCTGAATAGGCTTCACCCGTTACTCAAGCT
ACCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig69109:1662..2965+

>mRNA_H-elongata_contig69109.14558.1 ID=mRNA_H-elongata_contig69109.14558.1|Name=mRNA_H-elongata_contig69109.14558.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig69109:1662..2965+ (Himanthalia elongata Himel1 dioecious)
ATGCCCTCCCTCAGAAATGAAGGGAAGCGGCGACGTGACGAGGTCGAGCG
CCTTGAAGGCCAACAGGCGCCGGAAGACCAACCGATGACGTTTATGCAGC
ACGACATGGGTTTGGACCGGAGGCTGATCAAAGCGGTCGCCAAGATGGGT
TTTGTTTATCCTACCCTCGTCCAGTGCAAGAGCATCCCCTTGGCGCTGCA
GGGGAAAGATCTGCTGGTGCGTTTCGTTTTTTATTCAAGTGTATCAGTTT
GAATGCCCTCCCTCAGAAATGAAGGGAAGCGGCGACGTGACGAGGTCGAG
CGCCTTGAAGGCCAACAGGCGCCGGAAGACCAACCGATGACGTTTATGCA
GCACGACATGGGTTTGGACCGGAGGCTGATCAAAGCGGTCGCCAAGATGG
GTTTTGTTTATCCTACCCTCGTCCAGTGCAAGAGCATCCCCTTGGCGCTG
CAGGGGAAAGATCTGCTGGTGCGTTTCGTTTTTTATTCAAGTGTATCAGT
TTGA
back to top