mRNA_H-elongata_contig69097.14554.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69097.14554.1
Unique NamemRNA_H-elongata_contig69097.14554.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig69097.14554.1 vs. uniprot
Match: D7FMP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP4_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 5.940e-8
Identity = 35/57 (61.40%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 TIDTTITSTMSTSRAEATLALLEAERAQLERRLKKVEEEVEVEEALAKKNFREHHHK 171
            T+ TT T  MST+RAEATLA+LEAERAQLE RLKKVE+E+  E  L+K+N ++  H+
Sbjct:  135 TVRTTTTMAMSTARAEATLAVLEAERAQLEHRLKKVEDELRQERILSKENNKKRGHR 191
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69097.14554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMP4_ECTSI5.940e-861.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69097contigH-elongata_contig69097:97..844 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size144
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69097.14554.1prot_H-elongata_contig69097.14554.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69097 97..817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.0469446-CDS-H-elongata_contig69097:96..1621622931088.0469446-CDS-H-elongata_contig69097:96..162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69097 97..162 -
1691679692.981577-CDS-H-elongata_contig69097:96..1621691679692.981577-CDS-H-elongata_contig69097:96..162Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69097 97..162 -
1622931088.0642889-CDS-H-elongata_contig69097:739..8171622931088.0642889-CDS-H-elongata_contig69097:739..817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69097 740..817 -
1691679692.991948-CDS-H-elongata_contig69097:739..8171691679692.991948-CDS-H-elongata_contig69097:739..817Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69097 740..817 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931088.0840325-UTR-H-elongata_contig69097:817..8441622931088.0840325-UTR-H-elongata_contig69097:817..844Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69097 818..844 -
1691679693.0016732-UTR-H-elongata_contig69097:817..8441691679693.0016732-UTR-H-elongata_contig69097:817..844Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69097 818..844 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69097.14554.1

>prot_H-elongata_contig69097.14554.1 ID=prot_H-elongata_contig69097.14554.1|Name=mRNA_H-elongata_contig69097.14554.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
MSTSRAEATLALLEAERAQLERRLKKVEEEVEVEEALAKKNFREHHHK
back to top

mRNA from alignment at H-elongata_contig69097:97..844-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69097.14554.1 ID=mRNA_H-elongata_contig69097.14554.1|Name=mRNA_H-elongata_contig69097.14554.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=748bp|location=Sequence derived from alignment at H-elongata_contig69097:97..844- (Himanthalia elongata Himel1 dioecious)
ACTATTGATACCACGATCACCTCGACCATGAGCACATCGCGGGCAGAGGC
CACCTTGGCACTGCTAGAGGCAGAGCGCGCGCAGTTAGAGCGCCGCCTAA
AAAAGGTAAAAACCTATGCCTCGATTTAAGTATTTTCGTGCTGGGATAGG
TCTTGCTCCGCGGCGGTGTAATTTGGAACGTCGCGCATCGCAAAAAGGGT
ACAGTACTCGTCGGGAACACTATTCTTTATTAATATATCTGTACAATGCA
TGGCATCGATAAGTCAGATAGGTAAGCATGGCTGAAAAAAAAAAATGAAC
CCTGGATCCACGTGTTCCACGCTTAGTGATGGTTGAGTATACTCTCCTTG
ATTAGTTTGGGAGAAGCGAAACACCGATCAGGACGCAACAAGCAGACGTA
AAGAAGCGGCTAAATACCCAGGATGCCAGCGTATCAAACGCAGCAATTTC
TTGTGTTCCTTCGTATATCTCCCCTTCGTGTGTCTCCGGAGAATTACCAA
AGTAAAGGACCGCTGTTGATCCTACAAATATAGGATATGTTTTAACGAGG
CATCCTGAGCAGCAGCAAGAATCGTAAAATCCAGTGGGGAAAAGCAAGAA
TCGCTCATGAATGTCCTTACTTTAGCCGAGCCAAAACTAAGAGACGTTAA
GACAACGCCTTGACATCTCCTTTATGTGCCAGGTGGAGGAAGAGGTCGAA
GTGGAGGAGGCACTGGCGAAGAAAAACTTCCGAGAACATCATCACAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig69097:97..844-

>mRNA_H-elongata_contig69097.14554.1 ID=mRNA_H-elongata_contig69097.14554.1|Name=mRNA_H-elongata_contig69097.14554.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig69097:97..844- (Himanthalia elongata Himel1 dioecious)
ATGAGCACATCGCGGGCAGAGGCCACCTTGGCACTGCTAGAGGCAGAGCG
CGCGCAGTTAGAGCGCCGCCTAAAAAAGATGAGCACATCGCGGGCAGAGG
CCACCTTGGCACTGCTAGAGGCAGAGCGCGCGCAGTTAGAGCGCCGCCTA
AAAAAGGTGGAGGAAGAGGTCGAAGTGGAGGAGGCACTGGCGAAGAAAAA
CTTCCGAGAACATCATCACAAGGTGGAGGAAGAGGTCGAAGTGGAGGAGG
CACTGGCGAAGAAAAACTTCCGAGAACATCATCACAAG
back to top