mRNA_H-elongata_contig69082.14552.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69082.14552.1
Unique NamemRNA_H-elongata_contig69082.14552.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69082.14552.1 vs. uniprot
Match: UPI0020246435 (hypothetical protein n=2 Tax=Proteus mirabilis TaxID=584 RepID=UPI0020246435)

HSP 1 Score: 189 bits (481), Expect = 2.110e-52
Identity = 118/323 (36.53%), Postives = 179/323 (55.42%), Query Frame = 1
Query:   13 LDIPEPRNRRQAKKSSEWDDWRKAEEIEMRGMVENCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVKKYKRWLVAQGFWQVEGVHYTEKYLPTPSTASIRMLLATAAAKNGELRHFDAKQAFLKADIDEELYIEIPEEYRKFPGA--VGRLNKDIYGLVQAGRCWNNKFCSDMTAIGFEQGKVDPCVFRKVVDGEAEVVVVVHVDGILAHAKDKATMDRFAAELGQKFKLKDMSDARYYMGCHITRNRKVRELKIDQHLYVESMVEKFDVKKGSK--IPATSGVPALSKADEPRNPEEKEETRKFPYREAVGALMWTATMTRP 969
            LD  EP N  +A  S +   W +A + EM  M EN V+  V  P D+  +  K ++K+K   DG V  YK  LVA+GF QV+G+ Y E + P     S+R++LA AA  + E+   D K AFL   ++EELY+  PE +    GA  V +L + IYGLVQA R WN +F S + A GF Q   + C+++KV  G +   ++++VD IL    D   +D     L + F +KD+ +A Y +G  I R+R  R + + Q  Y++ +++KF + +  K  +P   GV  LSK   P   E++E+ +  PY  A+G++M+    TRP
Sbjct:    3 LDHDEPTNYEEAMVSPDSAKWLEAMKSEMGSMYENKVWTLVDLPDDRQAIENKWIFKKKTDADGNVTVYKARLVAKGFRQVQGIDYDETFSPVAMLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLEEELYMMQPEGFVDPKGANKVCKLQRSIYGLVQASRSWNKRFDSVIKAYGFIQTFGEACIYKKV-SGSSVAFLILYVDDILLIGNDIEFLDSIKGYLNKSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKVLKKFKMDQAKKGFLPVLQGV-KLSKTQCPTTAEDREKMKDVPYASAIGSIMYAMLCTRP 323          
BLAST of mRNA_H-elongata_contig69082.14552.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.540e-51
Identity = 109/302 (36.09%), Postives = 171/302 (56.62%), Query Frame = 1
Query:   67 DDWRKAEEIEMRGMVENCVYKQV-ARPKDKLVVGTKMLYKRKVGQDGKVKKYKRWLVAQGFWQVEGVHYTEKYLPTPSTASIRMLLATAAAKNGELRHFDAKQAFLKADIDEELYIEIPEEYRKFPGAVGRLNKDIYGLVQAGRCWNNKFCSDMTAIGFEQGKVDPCVFRKVVDGEAEVVVVVHVDGILAHAKDKATMDRFAAELGQKFKLKDMSDARYYMGCHITRNRKVRELKIDQHLYVESMVEKFDVKKGSKIPATSGVPALSKADEPRNPEEKEETRKFPYREAVGALMWTATMTRP 969
            + W +A   E  G +    +  V   P+ +  V +K  +  K  ++GK+  +K  LVA+GF Q+  V Y     P PS+ASI+++LA A  K   L H+D KQA+  A +DEE+++++P         + +  + IYGL Q+GR W       +   GFEQ K DPCVFRK+VD    +++V++VD IL    D+   +   A L +KF  K++ + +++ GC I R+ +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K ++       EE  ++P REA+G++MW +T +RP
Sbjct:  750 EGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRP 1043          
BLAST of mRNA_H-elongata_contig69082.14552.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.640e-51
Identity = 109/302 (36.09%), Postives = 171/302 (56.62%), Query Frame = 1
Query:   67 DDWRKAEEIEMRGMVENCVYKQV-ARPKDKLVVGTKMLYKRKVGQDGKVKKYKRWLVAQGFWQVEGVHYTEKYLPTPSTASIRMLLATAAAKNGELRHFDAKQAFLKADIDEELYIEIPEEYRKFPGAVGRLNKDIYGLVQAGRCWNNKFCSDMTAIGFEQGKVDPCVFRKVVDGEAEVVVVVHVDGILAHAKDKATMDRFAAELGQKFKLKDMSDARYYMGCHITRNRKVRELKIDQHLYVESMVEKFDVKKGSKIPATSGVPALSKADEPRNPEEKEETRKFPYREAVGALMWTATMTRP 969
            + W +A   E  G +    +  V   P+ +  V +K  +  K  ++GK+  +K  LVA+GF Q+  V Y     P PS+ASI+++LA A  K   L H+D KQA+  A +DEE+++++P         + +  + IYGL Q+GR W       +   GFEQ K DPCVFRK+VD    +++V++VD IL    D+   +   A L +KF  K++ + +++ GC I R+ +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K ++       EE  ++P REA+G++MW +T +RP
Sbjct: 1129 EGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRP 1422          
BLAST of mRNA_H-elongata_contig69082.14552.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.650e-51
Identity = 109/302 (36.09%), Postives = 171/302 (56.62%), Query Frame = 1
Query:   67 DDWRKAEEIEMRGMVENCVYKQV-ARPKDKLVVGTKMLYKRKVGQDGKVKKYKRWLVAQGFWQVEGVHYTEKYLPTPSTASIRMLLATAAAKNGELRHFDAKQAFLKADIDEELYIEIPEEYRKFPGAVGRLNKDIYGLVQAGRCWNNKFCSDMTAIGFEQGKVDPCVFRKVVDGEAEVVVVVHVDGILAHAKDKATMDRFAAELGQKFKLKDMSDARYYMGCHITRNRKVRELKIDQHLYVESMVEKFDVKKGSKIPATSGVPALSKADEPRNPEEKEETRKFPYREAVGALMWTATMTRP 969
            + W +A   E  G +    +  V   P+ +  V +K  +  K  ++GK+  +K  LVA+GF Q+  V Y     P PS+ASI+++LA A  K   L H+D KQA+  A +DEE+++++P         + +  + IYGL Q+GR W       +   GFEQ K DPCVFRK+VD    +++V++VD IL    D+   +   A L +KF  K++ + +++ GC I R+ +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K ++       EE  ++P REA+G++MW +T +RP
Sbjct: 1149 EGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRP 1442          
BLAST of mRNA_H-elongata_contig69082.14552.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 1.670e-51
Identity = 109/302 (36.09%), Postives = 171/302 (56.62%), Query Frame = 1
Query:   67 DDWRKAEEIEMRGMVENCVYKQV-ARPKDKLVVGTKMLYKRKVGQDGKVKKYKRWLVAQGFWQVEGVHYTEKYLPTPSTASIRMLLATAAAKNGELRHFDAKQAFLKADIDEELYIEIPEEYRKFPGAVGRLNKDIYGLVQAGRCWNNKFCSDMTAIGFEQGKVDPCVFRKVVDGEAEVVVVVHVDGILAHAKDKATMDRFAAELGQKFKLKDMSDARYYMGCHITRNRKVRELKIDQHLYVESMVEKFDVKKGSKIPATSGVPALSKADEPRNPEEKEETRKFPYREAVGALMWTATMTRP 969
            + W +A   E  G +    +  V   P+ +  V +K  +  K  ++GK+  +K  LVA+GF Q+  V Y     P PS+ASI+++LA A  K   L H+D KQA+  A +DEE+++++P         + +  + IYGL Q+GR W       +   GFEQ K DPCVFRK+VD    +++V++VD IL    D+   +   A L +KF  K++ + +++ GC I R+ +   L+I Q  Y++SMVE+FDVK  S+IPAT G     K ++       EE  ++P REA+G++MW +T +RP
Sbjct: 1292 EGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRP 1585          
BLAST of mRNA_H-elongata_contig69082.14552.1 vs. uniprot
Match: A0A6H5JC10_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC10_9PHAE)

HSP 1 Score: 190 bits (483), Expect = 3.470e-51
Identity = 107/302 (35.43%), Postives = 171/302 (56.62%), Query Frame = 1
Query:   67 DDWRKAEEIEMRGMVENCVYKQV-ARPKDKLVVGTKMLYKRKVGQDGKVKKYKRWLVAQGFWQVEGVHYTEKYLPTPSTASIRMLLATAAAKNGELRHFDAKQAFLKADIDEELYIEIPEEYRKFPGAVGRLNKDIYGLVQAGRCWNNKFCSDMTAIGFEQGKVDPCVFRKVVDGEAEVVVVVHVDGILAHAKDKATMDRFAAELGQKFKLKDMSDARYYMGCHITRNRKVRELKIDQHLYVESMVEKFDVKKGSKIPATSGVPALSKADEPRNPEEKEETRKFPYREAVGALMWTATMTRP 969
            + W +A   E  G +    +  V   P+ +  V +K  +  K  ++GK+  +K  LVA+GF Q+  V Y     P PS+ASI+++LA A  K   L H+D KQA+  A +DEE+++++P         + +  + IYGL Q+GR W       +   GFEQ K DPCVFRK+VD    +++V++VD IL    D+   +   A L +KF  K++ + +++ GC I R+ +   L+I Q  Y++SMV++FDV+  S+IPA+ GV    K D+ +  E       +P REA+G++MW +T +RP
Sbjct:  304 EGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHEIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDE-DCEELLASLSKKFPTKNLEECQWFDGCAIERDVETGTLRISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGE-------WPVREAIGSIMWVSTFSRP 597          
BLAST of mRNA_H-elongata_contig69082.14552.1 vs. uniprot
Match: UPI0020240260 (hypothetical protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI0020240260)

HSP 1 Score: 179 bits (455), Expect = 2.320e-50
Identity = 115/323 (35.60%), Postives = 175/323 (54.18%), Query Frame = 1
Query:   13 LDIPEPRNRRQAKKSSEWDDWRKAEEIEMRGMVENCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVKKYKRWLVAQGFWQVEGVHYTEKYLPTPSTASIRMLLATAAAKNGELRHFDAKQAFLKADIDEELYIEIPEEY--RKFPGAVGRLNKDIYGLVQAGRCWNNKFCSDMTAIGFEQGKVDPCVFRKVVDGEAEVVVVVHVDGILAHAKDKATMDRFAAELGQKFKLKDMSDARYYMGCHITRNRKVRELKIDQHLYVESMVEKFDVKKGSK--IPATSGVPALSKADEPRNPEEKEETRKFPYREAVGALMWTATMTRP 969
            LD  EP N  +A    + D W +A + E+  M EN V+     P D+  +  K ++K+K   DG V  YK  LVA+G+ QV+GV Y E + P     S+R++LA AA  + E+   D K AFL   + EELY+  PE +   K    V +L + IYGLVQA R WN +F   + A GF Q   + CV++KV  G +   ++++VD IL    D   ++   A L + F +KD+ +A Y +G  I R+R  R + + Q  Y++ +++KF++ +  K  +P   GV  LS A  P   E+ E+    PY  A+G++M+    TRP
Sbjct:   11 LDNGEPSNYEEAMAGPDSDKWLEAMKSEIGSMYENEVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLKEELYMMQPEGFVDPKNADKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFTQTYGEACVYKKV-SGSSVAFLILYVDDILLMGNDIEFLESIKAYLNKCFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKILKKFNMDQSKKGFLPVLQGV-QLSTAQCPTTAEDIEKMSVIPYASAIGSIMYAMLCTRP 331          
BLAST of mRNA_H-elongata_contig69082.14552.1 vs. uniprot
Match: UPI002025A47D (hypothetical protein n=1 Tax=Proteus mirabilis TaxID=584 RepID=UPI002025A47D)

HSP 1 Score: 184 bits (467), Expect = 2.650e-50
Identity = 116/323 (35.91%), Postives = 175/323 (54.18%), Query Frame = 1
Query:   13 LDIPEPRNRRQAKKSSEWDDWRKAEEIEMRGMVENCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVKKYKRWLVAQGFWQVEGVHYTEKYLPTPSTASIRMLLATAAAKNGELRHFDAKQAFLKADIDEELYIEIPEEY--RKFPGAVGRLNKDIYGLVQAGRCWNNKFCSDMTAIGFEQGKVDPCVFRKVVDGEAEVVVVVHVDGILAHAKDKATMDRFAAELGQKFKLKDMSDARYYMGCHITRNRKVRELKIDQHLYVESMVEKFDVKKGSK--IPATSGVPALSKADEPRNPEEKEETRKFPYREAVGALMWTATMTRP 969
            LD  EP N  +A    + + W +A + E+  M EN V+     P D+  +  K ++K+K   DG V  YK  LVA+G+ QV+GV Y E + P     S+R++LA AA  + E+   D K AFL   + EELY+  PE +   K    V +L + IYGLVQA R WN +F   + A GF Q   + CV++KV  G +   ++++VD IL    D   +D   A L + F +KD+ +A Y +G  I R+R  R + + Q  Y++ +++KF + +  K  +P   GV  LS A  P   ++KEE    PY  A+G++M+    TRP
Sbjct:   11 LDNGEPSNYEEAMAGPDSNKWLEAMKSEIESMYENKVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAYYDYEIWQMDVKTAFLNGHLKEELYMMQPEGFVDPKNANKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFMQTYGEACVYKKV-SGSSVAFLILYVDDILLMGNDIELLDSIKAYLNKCFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKILKKFKMDQSKKGFLPVLQGV-RLSSAQCPTTAKDKEEMSVIPYASAIGSIMYAMLCTRP 331          
BLAST of mRNA_H-elongata_contig69082.14552.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 184 bits (467), Expect = 6.880e-50
Identity = 114/334 (34.13%), Postives = 183/334 (54.79%), Query Frame = 1
Query:    1 MHATLDIPEPRNRRQAKKSSEWDDWRKAEEIEMRGMVENCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVKKYKRWLVAQGFWQVEGVHYTEKYLPTPSTASIRMLLATAAAKNGELRHFDAKQAFLKADIDEELYIEIPEEYRKF---------PGAVGRLNKDIYGLVQAGRCWNNKFCSDMTAIGFEQGKVDPCVFRKVVDGEAEVVVVVHVDGILAHAKDKATMDRFAAELGQKFKLKDMSDARYYMGCHITRNRKVRELKIDQHLYVESMVEKFDVK--KGSKIPATSGVPALSKADEPRNPEEKEETRKFPYREAVGALMWTATMTRP 969
            M AT ++P  +   +A    + D+W+KA   E++ ++ N  +K V +P  +  +G + ++  K  + G+V +YK  LVA+G+ Q  G+ Y E Y P     S+R +LA   A+  E+   D   AFL  +++EE+Y+E+PE  R+             V  L + +YGL QA R WN      + + GFE    DPCV+ +  +GE E +V ++VD +L  ++ KA +    A + +KF++KD+  AR+ +G  I  + + R L I Q  Y ES+++KF  +  K    P   GV  L+KADEP+  E+K + +  PYR  VG+LM+ A  TRP
Sbjct:   59 MAATEEVP--KTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEGMEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPCLTPLEPGV-QLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRP 388          
BLAST of mRNA_H-elongata_contig69082.14552.1 vs. uniprot
Match: UPI002025788D (hypothetical protein n=2 Tax=Proteus mirabilis TaxID=584 RepID=UPI002025788D)

HSP 1 Score: 184 bits (467), Expect = 3.090e-49
Identity = 117/323 (36.22%), Postives = 175/323 (54.18%), Query Frame = 1
Query:   13 LDIPEPRNRRQAKKSSEWDDWRKAEEIEMRGMVENCVYKQVARPKDKLVVGTKMLYKRKVGQDGKVKKYKRWLVAQGFWQVEGVHYTEKYLPTPSTASIRMLLATAAAKNGELRHFDAKQAFLKADIDEELYIEIPEEY--RKFPGAVGRLNKDIYGLVQAGRCWNNKFCSDMTAIGFEQGKVDPCVFRKVVDGEAEVVVVVHVDGILAHAKDKATMDRFAAELGQKFKLKDMSDARYYMGCHITRNRKVRELKIDQHLYVESMVEKFDVKKGSK--IPATSGVPALSKADEPRNPEEKEETRKFPYREAVGALMWTATMTRP 969
            LD  EP N  +A    + D W +A + E+  M EN V+     P D+  +  K ++K+K   DG V  YK  LVA+G+ QV+GV Y E + P     S+R++LA AA  + E+   D K AFL   + EELY+  PE +   K    V +L + IYGLVQA R WN +F   + A GF Q   + CV++KV  G +   ++++VD IL    D   +D   A L + F +KD+ +A Y +G  I R+R  R + + Q  Y++ +++KF + +  K  +P   GV  LS A  P   ++KEE    PY  A+G++M+    TRP
Sbjct:  187 LDNGEPSNYEEAMAGPDSDKWLEAMKSEIGSMYENEVWTLTDLPDDRRAIENKWIFKKKTDADGNVTIYKARLVAKGYRQVQGVDYDETFSPVAKLKSVRIMLAIAAFYDYEIWQMDVKTAFLNGFLKEELYMMQPEGFVDPKNADKVCKLQRSIYGLVQASRSWNIRFDEMIKAFGFTQTYGEACVYKKV-SGSSVAFLILYVDDILLMGNDIELLDSIKAYLNKCFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYLDKILKKFKMDQSKKGFLPVLQGV-RLSSAQCPTTAKDKEEMSVIPYASAIGSIMYAMLCTRP 507          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69082.14552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00202464352.110e-5236.53hypothetical protein n=2 Tax=Proteus mirabilis Tax... [more]
A0A6H5KSG8_9PHAE1.540e-5136.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE1.640e-5136.09Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE1.650e-5136.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE1.670e-5136.09Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JC10_9PHAE3.470e-5135.43Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00202402602.320e-5035.60hypothetical protein n=1 Tax=Proteus mirabilis Tax... [more]
UPI002025A47D2.650e-5035.91hypothetical protein n=1 Tax=Proteus mirabilis Tax... [more]
A0A6A3Q908_9STRA6.880e-5034.13Retrovirus-related Pol polyprotein from transposon... [more]
UPI002025788D3.090e-4936.22hypothetical protein n=2 Tax=Proteus mirabilis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69082contigH-elongata_contig69082:2299..3267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score178.7
Seed ortholog evalue4.3e-42
Seed eggNOG ortholog65672.G4TQF2
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size969
Cds size969
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.9297628-CDS-H-elongata_contig69082:2298..32671622931087.9297628-CDS-H-elongata_contig69082:2298..3267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69082 2299..3267 +
1691679692.9468935-CDS-H-elongata_contig69082:2298..32671691679692.9468935-CDS-H-elongata_contig69082:2298..3267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69082 2299..3267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69082.14552.1prot_H-elongata_contig69082.14552.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69082 2299..3267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69082.14552.1

>prot_H-elongata_contig69082.14552.1 ID=prot_H-elongata_contig69082.14552.1|Name=mRNA_H-elongata_contig69082.14552.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=323bp
MHATLDIPEPRNRRQAKKSSEWDDWRKAEEIEMRGMVENCVYKQVARPKD
KLVVGTKMLYKRKVGQDGKVKKYKRWLVAQGFWQVEGVHYTEKYLPTPST
ASIRMLLATAAAKNGELRHFDAKQAFLKADIDEELYIEIPEEYRKFPGAV
GRLNKDIYGLVQAGRCWNNKFCSDMTAIGFEQGKVDPCVFRKVVDGEAEV
VVVVHVDGILAHAKDKATMDRFAAELGQKFKLKDMSDARYYMGCHITRNR
KVRELKIDQHLYVESMVEKFDVKKGSKIPATSGVPALSKADEPRNPEEKE
ETRKFPYREAVGALMWTATMTRP
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mRNA from alignment at H-elongata_contig69082:2299..3267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69082.14552.1 ID=mRNA_H-elongata_contig69082.14552.1|Name=mRNA_H-elongata_contig69082.14552.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=969bp|location=Sequence derived from alignment at H-elongata_contig69082:2299..3267+ (Himanthalia elongata Himel1 dioecious)
ATGCACGCGACGCTGGATATACCGGAACCGAGGAATCGGCGGCAGGCAAA GAAATCGTCGGAATGGGACGATTGGCGGAAAGCAGAGGAAATCGAGATGC GTGGCATGGTCGAGAACTGTGTTTATAAGCAGGTGGCTCGGCCGAAGGAT AAGCTTGTGGTTGGCACAAAAATGCTCTACAAGCGAAAAGTCGGACAGGA CGGCAAGGTCAAGAAATACAAGCGCTGGCTTGTAGCTCAAGGGTTCTGGC AGGTAGAAGGTGTGCACTATACGGAGAAATACTTACCCACGCCATCGACC GCGTCAATCCGGATGCTTTTGGCCACAGCAGCGGCCAAGAACGGTGAGCT GCGCCATTTCGACGCGAAGCAGGCATTCCTGAAAGCGGACATCGATGAGG AATTGTACATTGAGATCCCCGAGGAGTACCGGAAGTTTCCGGGGGCAGTG GGGCGGCTGAACAAGGACATTTACGGACTCGTACAGGCGGGGAGGTGCTG GAACAACAAGTTTTGCAGCGATATGACAGCGATTGGATTCGAGCAGGGAA AGGTGGATCCGTGCGTGTTCCGTAAGGTCGTTGACGGCGAGGCAGAAGTG GTGGTGGTCGTACACGTGGACGGTATTCTTGCTCACGCCAAGGACAAAGC GACTATGGATAGATTCGCGGCTGAGCTTGGACAAAAGTTCAAATTGAAGG ACATGAGTGACGCCAGGTACTACATGGGTTGCCATATTACTAGGAACCGC AAGGTGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGT GGAAAAGTTCGACGTCAAGAAGGGAAGCAAGATACCGGCTACGTCGGGGG TGCCAGCACTCTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAAGGAG GAAACGAGGAAGTTTCCATACCGGGAAGCAGTGGGGGCGCTTATGTGGAC GGCGACGATGACACGGCCG
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Coding sequence (CDS) from alignment at H-elongata_contig69082:2299..3267+

>mRNA_H-elongata_contig69082.14552.1 ID=mRNA_H-elongata_contig69082.14552.1|Name=mRNA_H-elongata_contig69082.14552.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1938bp|location=Sequence derived from alignment at H-elongata_contig69082:2299..3267+ (Himanthalia elongata Himel1 dioecious)
ATGCACGCGACGCTGGATATACCGGAACCGAGGAATCGGCGGCAGGCAAA
GAAATCGTCGGAATGGGACGATTGGCGGAAAGCAGAGGAAATCGAGATGC
GTGGCATGGTCGAGAACTGTGTTTATAAGCAGGTGGCTCGGCCGAAGGAT
AAGCTTGTGGTTGGCACAAAAATGCTCTACAAGCGAAAAGTCGGACAGGA
CGGCAAGGTCAAGAAATACAAGCGCTGGCTTGTAGCTCAAGGGTTCTGGC
AGGTAGAAGGTGTGCACTATACGGAGAAATACTTACCCACGCCATCGACC
GCGTCAATCCGGATGCTTTTGGCCACAGCAGCGGCCAAGAACGGTGAGCT
GCGCCATTTCGACGCGAAGCAGGCATTCCTGAAAGCGGACATCGATGAGG
AATTGTACATTGAGATCCCCGAGGAGTACCGGAAGTTTCCGGGGGCAGTG
GGGCGGCTGAACAAGGACATTTACGGACTCGTACAGGCGGGGAGGTGCTG
GAACAACAAGTTTTGCAGCGATATGACAGCGATTGGATTCGAGCAGGGAA
AGGTGGATCCGTGCGTGTTCCGTAAGGTCGTTGACGGCGAGGCAGAAGTG
GTGGTGGTCGTACACGTGGACGGTATTCTTGCTCACGCCAAGGACAAAGC
GACTATGGATAGATTCGCGGCTGAGCTTGGACAAAAGTTCAAATTGAAGG
ACATGAGTGACGCCAGGTACTACATGGGTTGCCATATTACTAGGAACCGC
AAGGTGCGCGAGCTGAAGATCGACCAACACTTGTACGTGGAGTCGATGGT
GGAAAAGTTCGACGTCAAGAAGGGAAGCAAGATACCGGCTACGTCGGGGG
TGCCAGCACTCTCAAAGGCGGACGAGCCGCGGAACCCGGAGGAGAAGGAG
GAAACGAGGAAGTTTCCATACCGGGAAGCAGTGGGGGCGCTTATGTGGAC
GGCGACGATGACACGGCCGATGCACGCGACGCTGGATATACCGGAACCGA
GGAATCGGCGGCAGGCAAAGAAATCGTCGGAATGGGACGATTGGCGGAAA
GCAGAGGAAATCGAGATGCGTGGCATGGTCGAGAACTGTGTTTATAAGCA
GGTGGCTCGGCCGAAGGATAAGCTTGTGGTTGGCACAAAAATGCTCTACA
AGCGAAAAGTCGGACAGGACGGCAAGGTCAAGAAATACAAGCGCTGGCTT
GTAGCTCAAGGGTTCTGGCAGGTAGAAGGTGTGCACTATACGGAGAAATA
CTTACCCACGCCATCGACCGCGTCAATCCGGATGCTTTTGGCCACAGCAG
CGGCCAAGAACGGTGAGCTGCGCCATTTCGACGCGAAGCAGGCATTCCTG
AAAGCGGACATCGATGAGGAATTGTACATTGAGATCCCCGAGGAGTACCG
GAAGTTTCCGGGGGCAGTGGGGCGGCTGAACAAGGACATTTACGGACTCG
TACAGGCGGGGAGGTGCTGGAACAACAAGTTTTGCAGCGATATGACAGCG
ATTGGATTCGAGCAGGGAAAGGTGGATCCGTGCGTGTTCCGTAAGGTCGT
TGACGGCGAGGCAGAAGTGGTGGTGGTCGTACACGTGGACGGTATTCTTG
CTCACGCCAAGGACAAAGCGACTATGGATAGATTCGCGGCTGAGCTTGGA
CAAAAGTTCAAATTGAAGGACATGAGTGACGCCAGGTACTACATGGGTTG
CCATATTACTAGGAACCGCAAGGTGCGCGAGCTGAAGATCGACCAACACT
TGTACGTGGAGTCGATGGTGGAAAAGTTCGACGTCAAGAAGGGAAGCAAG
ATACCGGCTACGTCGGGGGTGCCAGCACTCTCAAAGGCGGACGAGCCGCG
GAACCCGGAGGAGAAGGAGGAAACGAGGAAGTTTCCATACCGGGAAGCAG
TGGGGGCGCTTATGTGGACGGCGACGATGACACGGCCG
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