mRNA_H-elongata_contig69080.14551.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69080.14551.1
Unique NamemRNA_H-elongata_contig69080.14551.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69080.14551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69080contigH-elongata_contig69080:1063..1373 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size311
Cds size303
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.7211678-UTR-H-elongata_contig69080:1062..10701622931087.7211678-UTR-H-elongata_contig69080:1062..1070Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69080 1063..1070 +
1691679692.9294407-UTR-H-elongata_contig69080:1062..10701691679692.9294407-UTR-H-elongata_contig69080:1062..1070Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69080 1063..1070 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.8905966-CDS-H-elongata_contig69080:1070..13731622931087.8905966-CDS-H-elongata_contig69080:1070..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69080 1071..1373 +
1691679692.938117-CDS-H-elongata_contig69080:1070..13731691679692.938117-CDS-H-elongata_contig69080:1070..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69080 1071..1373 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69080.14551.1prot_H-elongata_contig69080.14551.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69080 1071..1373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69080.14551.1

>prot_H-elongata_contig69080.14551.1 ID=prot_H-elongata_contig69080.14551.1|Name=mRNA_H-elongata_contig69080.14551.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
MLFLLQYIYIYIYIYSLRLRLLIVLKSEIFDIIGQRLVVGYARWVALEET
VAVFNGDQYESFTPPGALKSFGSPKSSCSLRFFWGGGLKCYEISRLFYRS
*
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mRNA from alignment at H-elongata_contig69080:1063..1373+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69080.14551.1 ID=mRNA_H-elongata_contig69080.14551.1|Name=mRNA_H-elongata_contig69080.14551.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=311bp|location=Sequence derived from alignment at H-elongata_contig69080:1063..1373+ (Himanthalia elongata Himel1 dioecious)
TGTCGAGCATGTTGTTTCTCTTGCAATATATATATATATATATATATATA
TATAGCTTACGCCTACGTCTTCTTATCGTGCTGAAATCTGAAATCTTTGA
TATAATCGGACAAAGGCTGGTAGTAGGCTACGCGCGATGGGTGGCGCTAG
AGGAGACGGTTGCCGTCTTCAATGGTGATCAATATGAGTCCTTCACACCT
CCTGGAGCTCTCAAGTCATTTGGCAGTCCTAAATCGTCGTGCTCGTTGCG
TTTTTTTTGGGGGGGGGGGTTGAAGTGTTACGAAATATCGAGGCTTTTTT
ACCGTTCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig69080:1063..1373+

>mRNA_H-elongata_contig69080.14551.1 ID=mRNA_H-elongata_contig69080.14551.1|Name=mRNA_H-elongata_contig69080.14551.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig69080:1063..1373+ (Himanthalia elongata Himel1 dioecious)
ATGTTGTTTCTCTTGCAATATATATATATATATATATATATATATAGCTT
ACGCCTACGTCTTCTTATCGTGCTGAAATCTGAAATCTTTGATATAATCG
GACAAAGGCTGGTAGTAGGCTACGCGCGATGGGTGGCGCTAGAGGAGACG
GTTGCCGTCTTCAATGGTGATCAATATGAGTCCTTCACACCTCCTGGAGC
TCTCAAGTCATTTGGCAGTCCTAAATCGTCGTGCTCGTTGCGTTTTTTTT
GGGGGGGGGGGTTGAAGTGTTACGAAATATCGAGGCTTTTTTACCGTTCC
TGAATGTTGTTTCTCTTGCAATATATATATATATATATATATATATATAG
CTTACGCCTACGTCTTCTTATCGTGCTGAAATCTGAAATCTTTGATATAA
TCGGACAAAGGCTGGTAGTAGGCTACGCGCGATGGGTGGCGCTAGAGGAG
ACGGTTGCCGTCTTCAATGGTGATCAATATGAGTCCTTCACACCTCCTGG
AGCTCTCAAGTCATTTGGCAGTCCTAAATCGTCGTGCTCGTTGCGTTTTT
TTTGGGGGGGGGGGTTGAAGTGTTACGAAATATCGAGGCTTTTTTACCGT
TCCTGA
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