mRNA_H-elongata_contig69031.14547.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69031.14547.1
Unique NamemRNA_H-elongata_contig69031.14547.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69031.14547.1 vs. uniprot
Match: D7FU18_ECTSI (Phospholipid-transporting ATPase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU18_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 7.090e-29
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 1
Query:   25 QVEVNLRLLGCTAIEDKLQEGVGHTVRALQNAGVKVWMLTGDKEETAVNIGVACQLLPPENAMERIIVNMD 237
            +VE NLRLLGCTAIEDKLQ+GVG  V ALQ A VKVWMLTGDKEETA+NIGVACQLL PE  MERIIVNMD
Sbjct:  886 EVEKNLRLLGCTAIEDKLQDGVGTCVDALQRARVKVWMLTGDKEETAINIGVACQLLGPEEQMERIIVNMD 956          
BLAST of mRNA_H-elongata_contig69031.14547.1 vs. uniprot
Match: A0A6H5KPG5_9PHAE (P-type phospholipid transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG5_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.170e-27
Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 1
Query:   25 QVEVNLRLLGCTAIEDKLQEGVGHTVRALQNAGVKVWMLTGDKEETAVNIGVACQLLPPENAMERIIVNMD 237
            +VE NL+LLGCTAIEDKLQ+GVG  V ALQ A VKVW+LTGDKEETA+NIGVACQLL PE  MERII+NMD
Sbjct:  837 EVEQNLQLLGCTAIEDKLQDGVGACVDALQRARVKVWILTGDKEETAINIGVACQLLGPEEQMERIIINMD 907          
BLAST of mRNA_H-elongata_contig69031.14547.1 vs. uniprot
Match: K8YX07_NANGC (Aminophospholipid-transporting P-type atpase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YX07_NANGC)

HSP 1 Score: 94.4 bits (233), Expect = 8.080e-23
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   25 QVEVNLRLLGCTAIEDKLQEGVGHTVRALQNAGVKVWMLTGDKEETAVNIGVACQLLPPENAMERIIVNMD 237
            ++E N  LLG TAIEDKLQEGV  T+  L  AG+KVWMLTGDKEETAVNIGVAC LL     M RI +N +
Sbjct:    3 KIESNFELLGATAIEDKLQEGVPETIHDLTRAGIKVWMLTGDKEETAVNIGVACNLLEHSTKMRRISINSE 73          
BLAST of mRNA_H-elongata_contig69031.14547.1 vs. uniprot
Match: W7TJY5_9STRA (Phospholipid-translocating P-type atpase domain containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJY5_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.130e-22
Identity = 46/71 (64.79%), Postives = 52/71 (73.24%), Query Frame = 1
Query:   25 QVEVNLRLLGCTAIEDKLQEGVGHTVRALQNAGVKVWMLTGDKEETAVNIGVACQLLPPENAMERIIVNMD 237
            ++E N  LLG TAIEDKLQEGV  T+  L  AG+KVWMLTGDKEETAVNIGVAC LL     M RI +N +
Sbjct:    3 KIESNFELLGATAIEDKLQEGVPETIHDLTRAGIKVWMLTGDKEETAVNIGVACNLLEHSTKMRRISINSE 73          
BLAST of mRNA_H-elongata_contig69031.14547.1 vs. uniprot
Match: A0A7S4DCU9_HETAK (Phospholipid-transporting ATPase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DCU9_HETAK)

HSP 1 Score: 96.7 bits (239), Expect = 1.300e-21
Identity = 45/72 (62.50%), Postives = 57/72 (79.17%), Query Frame = 1
Query:   25 QVEVNLRLLGCTAIEDKLQEGVGHTVRALQNAGVKVWMLTGDKEETAVNIGVACQL-LPPENAMERIIVNMD 237
            ++E +L LLG TAIEDKLQ+GVG T+  L  AG+ +W+LTGDKEETA+NI VACQL LP E  M RI++N+D
Sbjct:   77 EIEADLELLGVTAIEDKLQDGVGQTISDLSKAGIAIWVLTGDKEETAINIAVACQLILPSEEHMRRIVINLD 148          
BLAST of mRNA_H-elongata_contig69031.14547.1 vs. uniprot
Match: A0A4D9CUL2_9STRA (PhoLip_ATPase_C domain-containing protein (Fragment) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUL2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.840e-21
Identity = 47/78 (60.26%), Postives = 54/78 (69.23%), Query Frame = 1
Query:    4 DVSTNGPQVEVNLRLLGCTAIEDKLQEGVGHTVRALQNAGVKVWMLTGDKEETAVNIGVACQLLPPENAMERIIVNMD 237
            D+     ++E N  LLG TAIEDKLQEGV  T+  L  AG+KVWMLTGDKEETAVNIGVAC LL     M RI +N +
Sbjct:  378 DIDACMDKIESNFELLGATAIEDKLQEGVPETIHDLTRAGIKVWMLTGDKEETAVNIGVACNLLEHSTKMRRISINSE 455          
BLAST of mRNA_H-elongata_contig69031.14547.1 vs. uniprot
Match: A0A836CFX1_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX1_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.670e-20
Identity = 42/69 (60.87%), Postives = 56/69 (81.16%), Query Frame = 1
Query:   28 VEVNLRLLGCTAIEDKLQEGVGHTVRALQNAGVKVWMLTGDKEETAVNIGVACQLLPPENAMERIIVNM 234
            +E+ L LLG TAIEDKLQEGV   + ++  AG+KVW+LTGDKEETA+NIGVACQL+  E  M+R+++N+
Sbjct:  766 IEMGLELLGSTAIEDKLQEGVPGAIASIMAAGIKVWVLTGDKEETAINIGVACQLIWSEERMDRLVINL 834          
BLAST of mRNA_H-elongata_contig69031.14547.1 vs. uniprot
Match: UPI0010A2D76D (phospholipid-transporting ATPase 1-like isoform X1 n=3 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2D76D)

HSP 1 Score: 91.3 bits (225), Expect = 1.090e-19
Identity = 42/68 (61.76%), Postives = 57/68 (83.82%), Query Frame = 1
Query:   28 VEVNLRLLGCTAIEDKLQEGVGHTVRALQNAGVKVWMLTGDKEETAVNIGVACQLLPPENAMERIIVN 231
            +E NL+LLG T IEDKLQEGV  T+ +L+ AG+KVW+LTGDK+ETA++IG++C+LL P+  ME II+N
Sbjct:  801 IECNLKLLGATGIEDKLQEGVPETIESLRQAGIKVWVLTGDKQETAISIGLSCKLLTPD--MEMIIIN 866          
BLAST of mRNA_H-elongata_contig69031.14547.1 vs. uniprot
Match: A0A1V9ZJT1_9STRA (Phospholipid-transporting ATPase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZJT1_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-19
Identity = 43/71 (60.56%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   25 QVEVNLRLLGCTAIEDKLQEGVGHTVRALQNAGVKVWMLTGDKEETAVNIGVACQLLPPENAMERIIVNMD 237
            ++E NL LLG TAIEDKLQ GV  T+  L  AG+K+W+LTGDKEETA+NIG AC LL   N M+R+++N D
Sbjct: 1146 ELETNLELLGATAIEDKLQPGVPDTIATLAEAGIKIWVLTGDKEETAINIGYACNLL--HNNMKRVVINAD 1214          
BLAST of mRNA_H-elongata_contig69031.14547.1 vs. uniprot
Match: T0Q3D8_SAPDV (Phospholipid-transporting ATPase n=2 Tax=Saprolegnia TaxID=4769 RepID=T0Q3D8_SAPDV)

HSP 1 Score: 90.9 bits (224), Expect = 1.490e-19
Identity = 44/71 (61.97%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   25 QVEVNLRLLGCTAIEDKLQEGVGHTVRALQNAGVKVWMLTGDKEETAVNIGVACQLLPPENAMERIIVNMD 237
            ++E NL LLG TAIEDKLQ GV  T+  L +AG+K+W+LTGDKEETA+NIG AC LL   N M RII+N +
Sbjct:  662 ELETNLELLGATAIEDKLQPGVPDTIATLADAGIKIWVLTGDKEETAINIGFACNLL--HNGMTRIIINAE 730          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69031.14547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FU18_ECTSI7.090e-2983.10Phospholipid-transporting ATPase, putative n=1 Tax... [more]
A0A6H5KPG5_9PHAE1.170e-2778.87P-type phospholipid transporter n=1 Tax=Ectocarpus... [more]
K8YX07_NANGC8.080e-2364.79Aminophospholipid-transporting P-type atpase n=1 T... [more]
W7TJY5_9STRA7.130e-2264.79Phospholipid-translocating P-type atpase domain co... [more]
A0A7S4DCU9_HETAK1.300e-2162.50Phospholipid-transporting ATPase (Fragment) n=1 Ta... [more]
A0A4D9CUL2_9STRA4.840e-2160.26PhoLip_ATPase_C domain-containing protein (Fragmen... [more]
A0A836CFX1_9STRA1.670e-2060.87Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
UPI0010A2D76D1.090e-1961.76phospholipid-transporting ATPase 1-like isoform X1... [more]
A0A1V9ZJT1_9STRA1.100e-1960.56Phospholipid-transporting ATPase n=1 Tax=Thraustot... [more]
T0Q3D8_SAPDV1.490e-1961.97Phospholipid-transporting ATPase n=2 Tax=Saprolegn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69031contigH-elongata_contig69031:2720..2956 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue4.9e-24
Seed eggNOG ortholog2880.D7FU18
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
EC3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.400133-CDS-H-elongata_contig69031:2719..29561622931087.400133-CDS-H-elongata_contig69031:2719..2956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69031 2720..2956 -
1691679692.81622-CDS-H-elongata_contig69031:2719..29561691679692.81622-CDS-H-elongata_contig69031:2719..2956Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69031 2720..2956 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69031.14547.1prot_H-elongata_contig69031.14547.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69031 2720..2956 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69031.14547.1

>prot_H-elongata_contig69031.14547.1 ID=prot_H-elongata_contig69031.14547.1|Name=mRNA_H-elongata_contig69031.14547.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
MDVSTNGPQVEVNLRLLGCTAIEDKLQEGVGHTVRALQNAGVKVWMLTGD
KEETAVNIGVACQLLPPENAMERIIVNMD
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mRNA from alignment at H-elongata_contig69031:2720..2956-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69031.14547.1 ID=mRNA_H-elongata_contig69031.14547.1|Name=mRNA_H-elongata_contig69031.14547.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=237bp|location=Sequence derived from alignment at H-elongata_contig69031:2720..2956- (Himanthalia elongata Himel1 dioecious)
ATGGATGTTTCAACCAACGGCCCACAGGTGGAGGTAAACCTTCGACTGCT GGGGTGCACGGCGATCGAAGACAAGCTCCAAGAGGGTGTGGGGCACACGG TGCGAGCCCTGCAGAACGCCGGGGTGAAGGTGTGGATGCTCACGGGGGAC AAGGAGGAGACGGCGGTGAACATCGGCGTGGCGTGCCAGCTGTTGCCGCC CGAGAACGCTATGGAGAGGATTATCGTCAACATGGAC
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Coding sequence (CDS) from alignment at H-elongata_contig69031:2720..2956-

>mRNA_H-elongata_contig69031.14547.1 ID=mRNA_H-elongata_contig69031.14547.1|Name=mRNA_H-elongata_contig69031.14547.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig69031:2720..2956- (Himanthalia elongata Himel1 dioecious)
ATGGATGTTTCAACCAACGGCCCACAGGTGGAGGTAAACCTTCGACTGCT
GGGGTGCACGGCGATCGAAGACAAGCTCCAAGAGGGTGTGGGGCACACGG
TGCGAGCCCTGCAGAACGCCGGGGTGAAGGTGTGGATGCTCACGGGGGAC
AAGGAGGAGACGGCGGTGAACATCGGCGTGGCGTGCCAGCTGTTGCCGCC
CGAGAACGCTATGGAGAGGATTATCGTCAACATGGACATGGATGTTTCAA
CCAACGGCCCACAGGTGGAGGTAAACCTTCGACTGCTGGGGTGCACGGCG
ATCGAAGACAAGCTCCAAGAGGGTGTGGGGCACACGGTGCGAGCCCTGCA
GAACGCCGGGGTGAAGGTGTGGATGCTCACGGGGGACAAGGAGGAGACGG
CGGTGAACATCGGCGTGGCGTGCCAGCTGTTGCCGCCCGAGAACGCTATG
GAGAGGATTATCGTCAACATGGAC
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