mRNA_H-elongata_contig69029.14546.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69029.14546.1
Unique NamemRNA_H-elongata_contig69029.14546.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig69029.14546.1 vs. uniprot
Match: A0A6H5K0R4_9PHAE (PAS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0R4_9PHAE)

HSP 1 Score: 182 bits (463), Expect = 1.410e-53
Identity = 89/115 (77.39%), Postives = 98/115 (85.22%), Query Frame = 1 
Query:    1 QIEELDVNFDAISFYHQLMRASRTNDFPVVPNTLDHALKDQKSRIVVTTAKRPFRITHVNDAWTKLCGFEIEECRGKSLSVLQGPETNMTKVADLCALSQKGYAASMVVTNHNKK 345
            +IEELD+ FDAIS Y QLM AS   DFP VPNTLD+ALKD+ S IVVTTA RPFRITHVN AWT+LCGFE+EEC GKSLS+LQGPET+MT+V  LC LSQKGYA SMVVTNHNKK
Sbjct:  290 KIEELDMTFDAISCYQQLMLASGKEDFPPVPNTLDNALKDETSPIVVTTAARPFRITHVNKAWTELCGFELEECEGKSLSILQGPETDMTRVDKLCKLSQKGYATSMVVTNHNKK 404
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BLAST of mRNA_H-elongata_contig69029.14546.1 vs. uniprot
Match: A0A836C6X3_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6X3_9STRA)

HSP 1 Score: 162 bits (411), Expect = 2.080e-46
Identity = 75/113 (66.37%), Postives = 94/113 (83.19%), Query Frame = 1 
Query:    4 IEELDVNFDAISFYHQLMRASRTNDFPVVPNTLDHALKDQKSRIVVTTAKRPFRITHVNDAWTKLCGFEIEECRGKSLSVLQGPETNMTKVADLCALSQKGYAASMVVTNHNK 342
            IEEL++ FD I+ YHQLMRA    DFP+VPNTL+  LK+ K  IVVTTA+RPFRITHVN AWT+LCGFE++EC+GK+LS+LQGPET+M  V +L  +SQ+GY ASMVVTN++K
Sbjct:  252 IEELEMAFDGIAMYHQLMRAKGQGDFPLVPNTLNAVLKNDKDHIVVTTAQRPFRITHVNGAWTQLCGFELDECKGKNLSILQGPETDMDTVTELVDISQRGYPASMVVTNYDK 364
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BLAST of mRNA_H-elongata_contig69029.14546.1 vs. uniprot
Match: F0Y5Y2_AURAN (PAS domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5Y2_AURAN)

HSP 1 Score: 115 bits (288), Expect = 1.060e-30
Identity = 56/110 (50.91%), Postives = 76/110 (69.09%), Query Frame = 1 
Query:   25 FDAISFYHQLMRASRT---NDFPVVPNTLDHALKDQKSRIVVTTAKRPFRITHVNDAWTKLCGFEIEECRGKSLSVLQGPETNMTKVADLCALSQKGYAASMVVTNHNKK 345
            FD +  + QL RA+R+     +  +PNTLD A++D +   VVTTAKRPF I HVNDAWTKLCGF  EE  GK+L++LQGP+T   +VADL    + G+A S ++TN+ K+
Sbjct:    2 FDTVGLWQQLTRAARSPTAEPYVAIPNTLDDAVRDSEDARVVTTAKRPFVIEHVNDAWTKLCGFTAEEAVGKTLAILQGPDTEKGEVADLVRGCEDGHATSALLTNYTKE 111
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BLAST of mRNA_H-elongata_contig69029.14546.1 vs. uniprot
Match: A0A7S2DLD9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DLD9_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.040e-26
Identity = 53/115 (46.09%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    1 QIEELDVNFDAISFYHQLMRASRTNDFPVVPNTLDHALKDQKSRIVVTTAKRPFRITHVNDAWTKLCGFEIEECRGKSLSVLQGPETNMTKVADLCALSQKGYAASMVVTNHNKK 345
            ++++L+++FD I+F+ QL  AS   +  + PNT++ AL+      V+T A RPFRITHVN AWT+LCGF  EE  GK+LS++QGP+T+   VA LC     G A+SM   N+ K+
Sbjct:  320 KVKQLELHFDPIAFWRQLQHASGAKEVLLAPNTVEGALRHSHDARVITEATRPFRITHVNAAWTELCGFTAEEAYGKTLSLIQGPKTDPDTVAKLCKDCDHGRASSMKTVNYTKQ 434
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BLAST of mRNA_H-elongata_contig69029.14546.1 vs. uniprot
Match: A0A7S2FIQ7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FIQ7_9STRA)

HSP 1 Score: 102 bits (254), Expect = 3.350e-23
Identity = 56/121 (46.28%), Postives = 74/121 (61.16%), Query Frame = 1 
Query:    1 QIEELDVNFDAISFYHQLMRA------SRTNDFPVVPNTLDHALKDQKSRIVVTTAKRPFRITHVNDAWTKLCGFEIEECRGKSLSVLQGPETNMTKVADLCALSQKGYAASMVVTNHNKK 345
            +++ L++ FD ISF+ Q+ +A      S  +D  + PNTL+ AL   K   VVT A RPFRITHVN AWT LCGF  EE  G++L  LQG +T+   VA L      G A SM VTN++K+
Sbjct:  314 RLKHLELCFDPISFWRQMQQANTGSQISSIDDLLLAPNTLEQALSHSKEARVVTEAARPFRITHVNSAWTDLCGFTQEEACGQTLRCLQGEDTDGNTVAQLVEDCNDGKATSMEVTNYDKE 434
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BLAST of mRNA_H-elongata_contig69029.14546.1 vs. uniprot
Match: A0A7S2AW77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AW77_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.410e-14
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:  136 VVTTAKRPFRITHVNDAWTKLCGFEIEECRGKSLSVLQGPETNMTKVADLCALSQKGYAAS 318
            V+T AK PFRI HVN AWT+LCG+  EE  GKSL++LQGPET + +++ L A  ++  AAS
Sbjct:   37 VITEAKHPFRIVHVNSAWTRLCGYTQEESLGKSLNILQGPETEIEQLSKLQAQIEQQNAAS 97
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BLAST of mRNA_H-elongata_contig69029.14546.1 vs. uniprot
Match: A0A7S2AWG7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AWG7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 3.120e-14
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 1 
Query:  136 VVTTAKRPFRITHVNDAWTKLCGFEIEECRGKSLSVLQGPETNMTKVADLCALSQKGYAASMVVTNHNKK 345
            V+T AK PFRI HVN AWT+LCG+  EE  G+SL++LQGP+T + +++ L A  ++  AAS  +TN++K+
Sbjct:  268 VITEAKHPFRIVHVNSAWTRLCGYTQEESLGRSLNILQGPKTELEQLSKLEAQIEQENAASTHLTNYSKQ 337
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BLAST of mRNA_H-elongata_contig69029.14546.1 vs. uniprot
Match: A0A7S1FRJ4_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRJ4_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.080e-12
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:   58 RASRTN--DFPVVPNTLDHALKDQKSRIVVTTAKRPFRITHVNDAWTKLCGFEIEECRGKSLSVLQGPETNMTKVADLCALSQKGYAASMVVTNHNK 342
            RA R N  D   +P +   AL       VVT A  PFRI HVN AWT LCG+ ++E RG++L+V+QG +T++ +V  L A  +       V+ N+ K
Sbjct:  177 RAERENSTDDASLPRSYAEALAPSNQARVVTEAVEPFRIQHVNAAWTDLCGYTLDEVRGETLAVIQGRDTDLAEVVQLVAAVRAKGEGEAVLVNYAK 273
[Close]
BLAST of mRNA_H-elongata_contig69029.14546.1 vs. uniprot
Match: F0YEC2_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEC2_AURAN)

HSP 1 Score: 71.2 bits (173), Expect = 4.730e-12
Identity = 42/112 (37.50%), Postives = 61/112 (54.46%), Query Frame = 1 
Query:   13 LDVNFDAISFYHQLMRASRTNDFPVVPNTL-DHALKDQKSRIVVTTAKRPFRITHVNDAWTKLCGFEIEECRGKSLSVLQGPETNMTKVADLCALSQKGYAASMVVTNHNKK 345
            L++ +D  SF  + + A+ +   P  PN+L D    D     VVTTA+RPF I +VN AW  LCGF  +E  G+++S +QG  T+   V  + A    G AA M + N+  K
Sbjct: 1006 LELAYDMQSFA-RTVEAAASAPLPYAPNSLYDATFHDDPRAKVVTTARRPFVIANVNQAWLDLCGFGKDEVLGRTMSCIQGELTDRRAVESVHAAVAAGRAADMTLINYTSK 1116
[Close]
BLAST of mRNA_H-elongata_contig69029.14546.1 vs. uniprot
Match: A0A1Z5JWQ2_FISSO (PAS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JWQ2_FISSO)

HSP 1 Score: 68.2 bits (165), Expect = 2.080e-11
Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:   67 RTNDFPVVPNTLDHALKDQKSRIVVTTAKRPFRITHVNDAWTKLCGFEIEECRGKSLSVLQGPETN 264
            +T + P +P T   AL ++K  +VVTTA  P +I HVN AW  LCG+   E   ++LS++QGP+TN
Sbjct:  114 QTTESPRLPQTFAEALMEEKRAVVVTTAASPHKIVHVNAAWEGLCGYSRSEALDRTLSLIQGPDTN 179
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69029.14546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5K0R4_9PHAE1.410e-5377.39PAS domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A836C6X3_9STRA2.080e-4666.37BZIP domain-containing protein n=1 Tax=Tribonema m... [more]
F0Y5Y2_AURAN1.060e-3050.91PAS domain-containing protein n=1 Tax=Aureococcus ... [more]
A0A7S2DLD9_9STRA1.040e-2646.09Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2FIQ7_9STRA3.350e-2346.28Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2AW77_9STRA1.410e-1455.74Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2AWG7_9STRA3.120e-1450.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1FRJ4_9STRA1.080e-1240.21Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
F0YEC2_AURAN4.730e-1237.50Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A1Z5JWQ2_FISSO2.080e-1145.45PAS domain-containing protein n=2 Tax=Fistulifera ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69029contigH-elongata_contig69029:177..2303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size345
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69029.14546.1prot_H-elongata_contig69029.14546.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69029 254..2230 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.2807252-UTR-H-elongata_contig69029:176..2531622931087.2807252-UTR-H-elongata_contig69029:176..253Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69029 177..253 -
1691679692.7398732-UTR-H-elongata_contig69029:176..2531691679692.7398732-UTR-H-elongata_contig69029:176..253Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69029 177..253 -
1622931087.3491385-UTR-H-elongata_contig69029:2230..23031622931087.3491385-UTR-H-elongata_contig69029:2230..2303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69029 2231..2303 -
1691679692.7950869-UTR-H-elongata_contig69029:2230..23031691679692.7950869-UTR-H-elongata_contig69029:2230..2303Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69029 2231..2303 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.295236-CDS-H-elongata_contig69029:253..2721622931087.295236-CDS-H-elongata_contig69029:253..272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69029 254..272 -
1691679692.7524917-CDS-H-elongata_contig69029:253..2721691679692.7524917-CDS-H-elongata_contig69029:253..272Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69029 254..272 -
1622931087.312695-CDS-H-elongata_contig69029:1396..14921622931087.312695-CDS-H-elongata_contig69029:1396..1492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69029 1397..1492 -
1691679692.761888-CDS-H-elongata_contig69029:1396..14921691679692.761888-CDS-H-elongata_contig69029:1396..1492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69029 1397..1492 -
1622931087.3299532-CDS-H-elongata_contig69029:2150..22301622931087.3299532-CDS-H-elongata_contig69029:2150..2230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69029 2151..2230 -
1691679692.7790375-CDS-H-elongata_contig69029:2150..22301691679692.7790375-CDS-H-elongata_contig69029:2150..2230Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69029 2151..2230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69029.14546.1

>prot_H-elongata_contig69029.14546.1 ID=prot_H-elongata_contig69029.14546.1|Name=mRNA_H-elongata_contig69029.14546.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=65bp
MIFPWSQTPWTTPSRTRSRALSSPRLSGPSASHTSMTHGPSCAASRLKSV
GGRAFLFFRAPRLT*
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mRNA from alignment at H-elongata_contig69029:177..2303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69029.14546.1 ID=mRNA_H-elongata_contig69029.14546.1|Name=mRNA_H-elongata_contig69029.14546.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2127bp|location=Sequence derived from alignment at H-elongata_contig69029:177..2303- (Himanthalia elongata Himel1 dioecious)
CAGATCGAGGAGCTGGACGTAAACTTCGACGCGATTTCGTTTTATCACCA
GCTGATGAGGGCTTCCAGGACGAATGATTTTCCCGTGGTCCCAAACACCC
TGGACCACGCCCTCAAGGACCAGAAGTCGCGCATTGTCGTCACCACGGCT
AAGGTGCGGCGCGTTATTTCTCAGTGGTGCTAACAGTAGCAAATTATGTG
CTTATGTCGGGGGTGGGTTAGGAGCAGAGTTTAAGTGATTTTATCTTGAA
TCCCAAGCTGTTTCGGATTAGGGGTGTGTGTGGGGGGGTGGGGACAGAAG
AGTGGAACACGCAAGAATGACGCCGCTGTTTTTTTTCCTCGTGTGTGTCC
CGCGTTTTTCGCTCTGCGCTCGCCGTCCACGTGCACGCGCGTTTTGATGA
TTTTGATCCCCCCTGTATTCGCCCTCCCACATCCTCCTCCTCCACGGTAA
GCTATAACCTGCAGGAGCTTCCCACAGTGACGCCAGCTTGTCCCTTAGCG
CAATGCGTCGCTTTTACGTGGACGCTTTTGCGTGAAAATGCTTTGCTTAC
CCGGCAGGCTCTGGCACCCGCCGTTCCCCGTATGGTTGCGATGCTACTAA
TACAAATGCGTTATTTTCGTCTAAATATGTGGTGCATCGCGGAGAGATGT
TGTTCAATCCTTACCCCTATTCCCGCTCTTCCCCACCTCCGAAACGCCCA
CCTACTATTGTGCCCCTCCGCTCTCCTTCTCCTGCCTAACTAGTTGGGAA
TTCAAAACTTGAGTACCCCCCCGCACTCCCCCCACCCGAAAAAAAATATG
TCCACGCGCAGCGGCCCTTCCGCATCACACACGTCAATGACGCATGGACC
AAGCTGTGCGGCTTCGAGATTGAAGAGTGTCGGGGGAAGAGCCTTTCTGT
TCTTCAGGTAAGCATCTCTCTGTCATCTTGGCGGTAATTGTTTGAGATGG
TCTCCACCTCCCGAGACTTCTCTGTCCGTTCGACGTTTCTTCACGAGTTA
GCTTGCGGGGGAAAGACAGAAAACCCCCGATATATCTGGACTAACCATGA
GAGAGTCGTCTTGTATGAGGTCGATCGAAAGAGTTGGTGGGGGGCGTATC
AAAGTGCGTGTTTGGACGGCTGCAAGACACCTGTCACTCGTGGATGGGAT
CGAACTGGACCACATGCGTGTTTTCTCGATGACTTTCATAGAACGTCGTT
TCACGTGGATGCCTTTTTGCGCGTTGATACACGGCGGCTTCGGTGCTTTA
TCCGTGAACGCACGGAACTTCCGAGTGTTTCGGCCAAAAATTATCGTGTG
GCAGGTAAAGGTAGACTGGTAACTCAAGCTTTCCCCTGTAACCGAGGGAG
AATGACGTATCATTAGTGTTTGTGATTGTTTGACACTCTTAGTGTGTACC
GTGCTGTTTTTGCTGCTGAAGAACTACTCAATAGTGGCACCACCCATATT
CGTAGACCTATTAAATGCAGGAAGGGCCACGGTTCGTTTCTCGTGGTGAC
AACCTCCTCCCCCCCAATCCGCGATGCGCGCGAAGATTAAGCTTGTGTTC
TACAAACTTCTCGTTTTTTTTTATGAGGGCTTGTCAGAAAAACAGGGGAG
TCGTTGTTTGCGAGTTGCAATTTCCCTCGTAAGATTTTTACTGCCTAAAC
ATCCAAGCATCGAAAATCTCCGCGATCCAGCCGTTGCTCTCAGTGTACGC
TCCTTTCCTCCGACTGTAGTTGGATCTGTAACAAGTGGGTCCTCCTTTTG
CGTCCTAGCCACTTGCGCGCATTGCTAAATCTTTTCTCCGAAGGCGAAGG
CGAAACATTTAAAAGAGCTTCCGTTTCTTCCGCTTTTCTGGAGGCGTTTG
GAGGGAGCGTCGTGTGTGTCAAGAGCAAAGCTAAAGCCGCGTGCTCCTCT
CACGTGGTGCACACAAATATATCATCCCAGGGACTTTCGCCTGCCCCTCT
CACCCTACCTCTGTCTTCTTTCTCTCTGACTCACATTTCGTCATTATCGG
TTTCTTGGCCGTGTGTCCTCGCAACTCTCAGGGCCCCGAGACTAACATGA
CAAAGGTCGCCGACCTGTGCGCTCTGTCCCAAAAGGGTTACGCCGCGTCC
ATGGTGGTCACCAACCATAACAAGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig69029:177..2303-

>mRNA_H-elongata_contig69029.14546.1 ID=mRNA_H-elongata_contig69029.14546.1|Name=mRNA_H-elongata_contig69029.14546.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=390bp|location=Sequence derived from alignment at H-elongata_contig69029:177..2303- (Himanthalia elongata Himel1 dioecious)
ATGATTTTCCCGTGGTCCCAAACACCCTGGACCACGCCCTCAAGGACCAG
AAGTCGCGCATTGTCGTCACCACGGCTAAGATGATTTTCCCGTGGTCCCA
AACACCCTGGACCACGCCCTCAAGGACCAGAAGTCGCGCATTGTCGTCAC
CACGGCTAAGCGGCCCTTCCGCATCACACACGTCAATGACGCATGGACCA
AGCTGTGCGGCTTCGAGATTGAAGAGTGTCGGGGGAAGAGCCTTTCTGTT
CTTCAGCGGCCCTTCCGCATCACACACGTCAATGACGCATGGACCAAGCT
GTGCGGCTTCGAGATTGAAGAGTGTCGGGGGAAGAGCCTTTCTGTTCTTC
AGGGCCCCGAGACTAACATGAGGCCCCGAGACTAACATGA
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