mRNA_H-elongata_contig69000.14543.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig69000.14543.1
Unique NamemRNA_H-elongata_contig69000.14543.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A0A9Y7J8_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y7J8_LYGHE)

HSP 1 Score: 107 bits (267), Expect = 1.200e-26
Identity = 54/134 (40.30%), Postives = 84/134 (62.69%), Query Frame = 1
Query:   40 WQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAY--------RDSRKQVGLLKKAMYGLVHAGLLW 417
            W +V+RP+GKTV+ +R VF+ K+  DG +E+ K RLVA+GF Q+ G HY E+ +     +SIR V+++ A    E  QLD   AYL  ++E+EIY+E+P+          +D   +V  ++KA+YGL  +G +W
Sbjct:   49 WTLVDRPEGKTVVGSRWVFRTKLKADGTVERRKARLVAKGFTQIPGTHYNETYTSVARLSSIRFVIALAAERNLELEQLDFTCAYLNGEIEEEIYMEVPKEIETILGRKTQDRENKVSRIQKALYGLKQSGRMW 182          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 114 bits (284), Expect = 1.300e-26
Identity = 56/128 (43.75%), Postives = 85/128 (66.41%), Query Frame = 1
Query:   34 GVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW 417
            GV++ V RP+ + ++ ++ VFK K   DG++EKYK RLVAQGF QV+GI Y E+ +P     SIR++L++ A   WE  Q+D+  A+L  ++E+EIY+++P  ++ S   V  LKKA+YGL  A   W
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREW 1152          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 112 bits (280), Expect = 4.410e-26
Identity = 55/140 (39.29%), Postives = 90/140 (64.29%), Query Frame = 1
Query:    1 IAREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRK-QVGLLKKAMYGLVHAGLLW 417
            +A+E++       W+VV+ P  K  +  + ++K K + DG IE+YK RLVAQGF Q++GI Y+E  SP     S+R  L+++ A  WE  Q+D++ A+L  D+E+E+Y++LPE ++ + K +V  L+K++YGL  A   W
Sbjct:  569 MAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 111 bits (278), Expect = 6.630e-26
Identity = 55/140 (39.29%), Postives = 90/140 (64.29%), Query Frame = 1
Query:    1 IAREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRK-QVGLLKKAMYGLVHAGLLW 417
            +A+E++       W+VV+ P  K  +  + ++K K + DG IE+YK RLVAQGF Q++GI Y+E+ SP     S+R  L++  A  WE  Q+D++ A+L  D+E+E+Y++LPE ++ + K +V  L+K++YGL  A   W
Sbjct:  100 MAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A117NI32_PICGL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Picea glauca TaxID=3330 RepID=A0A117NI32_PICGL)

HSP 1 Score: 107 bits (266), Expect = 8.320e-26
Identity = 53/141 (37.59%), Postives = 87/141 (61.70%), Query Frame = 1
Query:    1 IAREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQ--VGLLKKAMYGLVHAGLLW 417
            +  E    +   VW++V RP+GK V++++ +FK K   DG I KYK R VA+GF Q +G++YEE+ +P     SIR ++++ + +G +  Q+D+  A+L   +E+E+Y+E P+ +    K+  V  LKKA+YGL  A   W
Sbjct:   66 MVEEYQSIMKNDVWEIVPRPEGKPVVTSKWIFKIKHTADGSIYKYKARFVARGFSQTEGVYYEETFAPDARYTSIRSIIAIASVMGRKLHQMDVKTAFLNGVIEEEVYIEQPQGFESHGKESHVCRLKKALYGLKQAPRAW 206          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 110 bits (276), Expect = 1.550e-25
Identity = 55/140 (39.29%), Postives = 89/140 (63.57%), Query Frame = 1
Query:    1 IAREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRK-QVGLLKKAMYGLVHAGLLW 417
            +A+E++       W+VV+ P  K  +  + ++K K + DG IE+YK RLVAQGF Q++GI Y+E  SP     S+R  L++  A  WE  Q+D++ A+L  D+E+E+Y++LPE ++ + K +V  L+K++YGL  A   W
Sbjct:  823 MAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: UPI00192EECC5 (uncharacterized protein LOC120294339 n=1 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI00192EECC5)

HSP 1 Score: 107 bits (267), Expect = 4.120e-25
Identity = 52/139 (37.41%), Postives = 85/139 (61.15%), Query Frame = 1
Query:    1 IAREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW 417
            +  EM      G W++V+ P+GK ++  + VF  K   DG +E+YK RLVA+GF Q  G+ Y+E+ +P     S+R++LS+ AA  W   QLD+  A+L  D+E+E+++ LP  + ++  +V  LKK++YGL  +   W
Sbjct:    3 VEDEMLALKKNGTWKLVDAPEGKKIVGCKWVFTVKCKLDGSVERYKTRLVAKGFTQTYGVDYQETFAPVAKINSVRILLSLAAAFDWPLHQLDVKNAFLNGDLEEEVFMSLPPGFAETEGKVCRLKKSLYGLKQSPRAW 141          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A5BDW5_VITVI (Reverse transcriptase Ty1/copia-type domain-containing protein n=16 Tax=Vitis vinifera TaxID=29760 RepID=A5BDW5_VITVI)

HSP 1 Score: 102 bits (255), Expect = 4.210e-25
Identity = 54/138 (39.13%), Postives = 83/138 (60.14%), Query Frame = 1
Query:   10 EMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAY--RDSRKQVGLLKKAMYGLVHAGLLW 417
            EM       VW +V+ P G   +  + VFK K D  G IE+YK RLVA+GF Q +GI Y E+ SP   + S+R++L+++A    E +Q+D+  A+L  ++E+E+Y++ PE +   D  + V  LKK++YGL  A   W
Sbjct:    4 EMSSMKCNDVWDLVDLPNGVKTIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRIILALVAHFDLELQQMDVKTAFLNGELEEEVYMKQPEGFPSSDGEQLVSKLKKSIYGLKQASRQW 141          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 108 bits (271), Expect = 7.190e-25
Identity = 57/138 (41.30%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    4 AREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW 417
            A E+   +   ++  VERP+ + V+  + VFK K   DG IEKYK RLVA+GF QV+G+ + E+ +P    AS+R +L++ A L  E  Q+D+  A+L  D+++EIY+++P  +R S   V  L KA+YGL  AG  W
Sbjct:  887 AEELHAFVKAELYDEVERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAGREW 1024          
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 108 bits (271), Expect = 7.210e-25
Identity = 56/138 (40.58%), Postives = 86/138 (62.32%), Query Frame = 1
Query:    4 AREMDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGFRQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVEKEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW 417
            A E+   +   ++  VERP+ + V+  + VFK K   DG IEKYK RLVA+GF QV+G+ + E+ +P    AS+R +L++ A L  E  Q+D+  A+L  D+++EIY+++P  +R S   +  L KA+YGL  AG  W
Sbjct:  623 AEELHAFVKAELYDKVERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREW 760          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig69000.14543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0A9Y7J8_LYGHE1.200e-2640.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C2WN23_AMAMK1.300e-2643.75Integrase catalytic domain-containing protein (Fra... [more]
A0A438E4T4_VITVI4.410e-2639.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GNV2_VITVI6.630e-2639.29Retrovirus-related Pol polyprotein from transposon... [more]
A0A117NI32_PICGL8.320e-2637.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5BCC7_VITVI1.550e-2539.29Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
UPI00192EECC54.120e-2537.41uncharacterized protein LOC120294339 n=1 Tax=Eucal... [more]
A5BDW5_VITVI4.210e-2539.13Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H317_9APHY7.190e-2541.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A401H123_9APHY7.210e-2540.58Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig69000contigH-elongata_contig69000:1489..1908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score109.4
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog176275.XP_008602273.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,3TMCJ@5125,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelHypocreales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.070781-CDS-H-elongata_contig69000:1488..18961622931087.070781-CDS-H-elongata_contig69000:1488..1896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69000 1489..1896 -
1691679692.6602128-CDS-H-elongata_contig69000:1488..18961691679692.6602128-CDS-H-elongata_contig69000:1488..1896Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig69000 1489..1896 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931087.1008658-UTR-H-elongata_contig69000:1896..19081622931087.1008658-UTR-H-elongata_contig69000:1896..1908Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69000 1897..1908 -
1691679692.6720994-UTR-H-elongata_contig69000:1896..19081691679692.6720994-UTR-H-elongata_contig69000:1896..1908Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig69000 1897..1908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig69000.14543.1prot_H-elongata_contig69000.14543.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig69000 1489..1896 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig69000.14543.1

>prot_H-elongata_contig69000.14543.1 ID=prot_H-elongata_contig69000.14543.1|Name=mRNA_H-elongata_contig69000.14543.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
MDGQIPRGVWQVVERPKGKTVLSTRVVFKRKIDKDGRIEKYKCRLVAQGF
RQVKGIHYEESSSPAPAQASIRMVLSMIAALGWEARQLDIDMAYLEADVE
KEIYVELPEAYRDSRKQVGLLKKAMYGLVHAGLLW*
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mRNA from alignment at H-elongata_contig69000:1489..1908-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig69000.14543.1 ID=mRNA_H-elongata_contig69000.14543.1|Name=mRNA_H-elongata_contig69000.14543.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=420bp|location=Sequence derived from alignment at H-elongata_contig69000:1489..1908- (Himanthalia elongata Himel1 dioecious)
ATCGCGCGCGAGATGGATGGGCAAATTCCTCGAGGCGTGTGGCAGGTGGT GGAGCGCCCAAAAGGGAAGACGGTTTTGAGCACGAGAGTAGTTTTCAAGC GAAAAATCGACAAGGATGGAAGGATCGAAAAGTATAAATGTCGTCTCGTG GCGCAGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTC TCCGGCTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCGG CTCTCGGCTGGGAGGCGCGGCAGCTGGATATTGACATGGCCTACCTGGAG GCCGATGTGGAGAAGGAGATCTACGTTGAGCTCCCGGAGGCATACCGTGA CTCCAGGAAGCAAGTTGGCTTACTAAAGAAGGCAATGTACGGACTCGTCC ATGCCGGGCTGCTGTGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig69000:1489..1908-

>mRNA_H-elongata_contig69000.14543.1 ID=mRNA_H-elongata_contig69000.14543.1|Name=mRNA_H-elongata_contig69000.14543.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig69000:1489..1908- (Himanthalia elongata Himel1 dioecious)
ATGGATGGGCAAATTCCTCGAGGCGTGTGGCAGGTGGTGGAGCGCCCAAA
AGGGAAGACGGTTTTGAGCACGAGAGTAGTTTTCAAGCGAAAAATCGACA
AGGATGGAAGGATCGAAAAGTATAAATGTCGTCTCGTGGCGCAGGGTTTC
AGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCGGCTCCTGC
GCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCGGCTCTCGGCTGGG
AGGCGCGGCAGCTGGATATTGACATGGCCTACCTGGAGGCCGATGTGGAG
AAGGAGATCTACGTTGAGCTCCCGGAGGCATACCGTGACTCCAGGAAGCA
AGTTGGCTTACTAAAGAAGGCAATGTACGGACTCGTCCATGCCGGGCTGC
TGTGGTAAATGGATGGGCAAATTCCTCGAGGCGTGTGGCAGGTGGTGGAG
CGCCCAAAAGGGAAGACGGTTTTGAGCACGAGAGTAGTTTTCAAGCGAAA
AATCGACAAGGATGGAAGGATCGAAAAGTATAAATGTCGTCTCGTGGCGC
AGGGTTTCAGGCAGGTCAAAGGCATACACTACGAGGAATCCTCCTCTCCG
GCTCCTGCGCAGGCCAGCATTAGGATGGTACTCAGCATGATCGCGGCTCT
CGGCTGGGAGGCGCGGCAGCTGGATATTGACATGGCCTACCTGGAGGCCG
ATGTGGAGAAGGAGATCTACGTTGAGCTCCCGGAGGCATACCGTGACTCC
AGGAAGCAAGTTGGCTTACTAAAGAAGGCAATGTACGGACTCGTCCATGC
CGGGCTGCTGTGGTAA
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