mRNA_H-elongata_contig1188.1454.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1188.1454.1
Unique NamemRNA_H-elongata_contig1188.1454.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1188.1454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1188contigH-elongata_contig1188:7711..8225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size291
Cds size288
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929695.037298-CDS-H-elongata_contig1188:7712..77651622929695.037298-CDS-H-elongata_contig1188:7712..7765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1188 7713..7765 -
1691679121.9655297-CDS-H-elongata_contig1188:7712..77651691679121.9655297-CDS-H-elongata_contig1188:7712..7765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1188 7713..7765 -
1622929695.0586426-CDS-H-elongata_contig1188:7990..82251622929695.0586426-CDS-H-elongata_contig1188:7990..8225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1188 7991..8225 -
1691679121.9759243-CDS-H-elongata_contig1188:7990..82251691679121.9759243-CDS-H-elongata_contig1188:7990..8225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1188 7991..8225 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1188.1454.1prot_H-elongata_contig1188.1454.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1188 7713..8225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1188.1454.1

>prot_H-elongata_contig1188.1454.1 ID=prot_H-elongata_contig1188.1454.1|Name=mRNA_H-elongata_contig1188.1454.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=96bp
PSPRTLAGRSIRTGFRRASPSPPVGRLSSSFPNSGPRGVGAEVTSRCSKR
EMAVTARKGMKAVEKELEVSVTGEAISEVPAPKATVAKGSASGCDD
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mRNA from alignment at H-elongata_contig1188:7711..8225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1188.1454.1 ID=mRNA_H-elongata_contig1188.1454.1|Name=mRNA_H-elongata_contig1188.1454.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=515bp|location=Sequence derived from alignment at H-elongata_contig1188:7711..8225- (Himanthalia elongata Himel1 dioecious)
CCGTCTCCGCGAACACTGGCTGGAAGAAGTATCCGGACAGGCTTTCGCCG
CGCTTCACCATCACCCCCCGTGGGGCGGCTCTCATCGTCTTTCCCGAATT
CTGGACCTCGCGGGGTCGGCGCTGAAGTGACCTCGCGGTGTTCCAAAAGA
GAAATGGCGGTGACAGCTAGGAAAGGAATGAAAGCGGTGGAGAAAGAGTT
GGAAGTATCCGTAACCGGAGAGGCAATTTCTGAAGGTATTCATCTCCGAG
CGCATAATATTTCATGCACGTGTCGACAGGAAGTGGCAGCAAGGCTGATT
AGATGAATATAATAATTTGGCCGACGCGGTCAAGCGCTATACTTTTCAGT
CACTCTGAGGTATATCCCTTGAGAACGTTTGCGAGTGCCATTCTGGGGGT
AGAATCTGCGGAGTGCGTTAAGAATCGCGTCGTCGCGTTGTCCGCCACCA
CCTCCAACAGTGCCCGCGCCAAAAGCGACGGTGGCAAAAGGAAGCGCTTC
TGGCTGCGACGATTT
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Coding sequence (CDS) from alignment at H-elongata_contig1188:7711..8225-

>mRNA_H-elongata_contig1188.1454.1 ID=mRNA_H-elongata_contig1188.1454.1|Name=mRNA_H-elongata_contig1188.1454.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at H-elongata_contig1188:7711..8225- (Himanthalia elongata Himel1 dioecious)
CCGTCTCCGCGAACACTGGCTGGAAGAAGTATCCGGACAGGCTTTCGCCG
CGCTTCACCATCACCCCCCGTGGGGCGGCTCTCATCGTCTTTCCCGAATT
CTGGACCTCGCGGGGTCGGCGCTGAAGTGACCTCGCGGTGTTCCAAAAGA
GAAATGGCGGTGACAGCTAGGAAAGGAATGAAAGCGGTGGAGAAAGAGTT
GGAAGTATCCGTAACCGGAGAGGCAATTTCTGAAGCCGTCTCCGCGAACA
CTGGCTGGAAGAAGTATCCGGACAGGCTTTCGCCGCGCTTCACCATCACC
CCCCGTGGGGCGGCTCTCATCGTCTTTCCCGAATTCTGGACCTCGCGGGG
TCGGCGCTGAAGTGACCTCGCGGTGTTCCAAAAGAGAAATGGCGGTGACA
GCTAGGAAAGGAATGAAAGCGGTGGAGAAAGAGTTGGAAGTATCCGTAAC
CGGAGAGGCAATTTCTGAAGTGCCCGCGCCAAAAGCGACGGTGGCAAAAG
GAAGCGCTTCTGGCTGCGACGATTGCCCGCGCCAAAAGCGACGGTGGCAA
AAGGAAGCGCTTCTGGCTGCGACGAT
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