mRNA_H-elongata_contig68949.14537.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig68949.14537.1 vs. uniprot
Match: A0A6H5JBA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBA7_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.440e-27 Identity = 79/201 (39.30%), Postives = 109/201 (54.23%), Query Frame = 1
Query: 10 FLKHKSDATNSLRGIINDYFAPEGLK--IGVIHTD-GGEEWHGQFLSFLSKLGMKRDSTPPYTPQYNCVVDRALGLLRDQTVA-------LLRGVMECKSDHLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLRRSKPGHKLDPRGASCIMLGLAPDCPRDTFRVRDLT-TGQILNRQAVPW 579
FLKHKSDA + R + A +G+ + ++ +D GGE + G+F S ++L +K++ TP Y+PQYN V +R LGL+ + +A L V K+D LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P KL P+G SC +G + D PRD RV LT G I + V W
Sbjct: 761 FLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRDVTW 956
BLAST of mRNA_H-elongata_contig68949.14537.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE) HSP 1 Score: 119 bits (297), Expect = 2.460e-27 Identity = 79/201 (39.30%), Postives = 109/201 (54.23%), Query Frame = 1
Query: 10 FLKHKSDATNSLRGIINDYFAPEGLK--IGVIHTD-GGEEWHGQFLSFLSKLGMKRDSTPPYTPQYNCVVDRALGLLRDQTVA-------LLRGVMECKSDHLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLRRSKPGHKLDPRGASCIMLGLAPDCPRDTFRVRDLT-TGQILNRQAVPW 579
FLKHKSDA + R + A +G+ + ++ +D GGE + G+F S ++L +K++ TP Y+PQYN V +R LGL+ + +A L V K+D LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P KL P+G SC +G + D PRD RV LT G I + V W
Sbjct: 468 FLKHKSDAGMAFRSFLASVRA-DGVPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSKSPYEMWYGE-PRPARPYPFLKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRDVTW 663
BLAST of mRNA_H-elongata_contig68949.14537.1 vs. uniprot
Match: A0A6H5KWE4_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE4_9PHAE) HSP 1 Score: 111 bits (277), Expect = 3.360e-26 Identity = 75/201 (37.31%), Postives = 106/201 (52.74%), Query Frame = 1
Query: 10 FLKHKSDATNSLRGIINDYFAPEGLK--IGVIHTD-GGEEWHGQFLSFLSKLGMKRDSTPPYTPQYNCVVDRALGLL-------RDQTVALLRGVMECKSDHLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLRRSKPGHKLDPRGASCIMLGLAPDCPRDTFRVRDLT-TGQILNRQAVPW 579
FLK K DA ++ R + A +G+ + ++ +D GGE + G+F S ++L +K++ TP Y+PQYN V +R LGL+ R Q L V K+D LWAEAM +AC+ N S+ SPYE+W+G P F Y R +P KL P+G +C +G + D PRD RV LT G I + V W
Sbjct: 15 FLKSKPDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPYP-FLKPAYCRWQRPS-KLLPKGEACFYVGPSRDHPRDCHRV--LTRVGTIQETRNVTW 210
BLAST of mRNA_H-elongata_contig68949.14537.1 vs. uniprot
Match: A0A6H5KVR5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVR5_9PHAE) HSP 1 Score: 112 bits (279), Expect = 5.740e-26 Identity = 71/184 (38.59%), Postives = 100/184 (54.35%), Query Frame = 1
Query: 10 FLKHKSDATNSLRGIINDYFA---PEGLKIGVIHTDGGEEWHGQFLSFLSKLGMKRDSTPPYTPQYNCVVDRALGLLRDQTVA-------LLRGVMECKSDHLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLRRSKPGHKLDPRGASCIMLGLAPDCPRDTFRV 531
FL++KSDA ++ R + A P ++I V +GG+ + G F S ++L +K++ TP Y+PQYN V +R LGL+ + +A L V K+D LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P KL P+G SC +G + D PRD RV
Sbjct: 129 FLRNKSDAGSAFRTFLASVRANGVPSFVEI-VRSDNGGKFFGGDFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFSKPAYCRWQRPS-KLLPKGESCFYVGPSRDHPRDCHRV 309
BLAST of mRNA_H-elongata_contig68949.14537.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE) HSP 1 Score: 114 bits (285), Expect = 9.390e-26 Identity = 78/201 (38.81%), Postives = 108/201 (53.73%), Query Frame = 1
Query: 10 FLKHKSDATNSLRGIINDYFA---PEGLKIGVIHTDGGEEWHGQFLSFLSKLGMKRDSTPPYTPQYNCVVDRALGLLRDQTVA-------LLRGVMECKSDHLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLRRSKPGHKLDPRGASCIMLGLAPDCPRDTFRVRDLT-TGQILNRQAVPW 579
FL++KSDA ++ R + A P ++I V +GGE + G+F S ++L +K++ TP Y+PQYN V +R LGL+ + +A L V K+D LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P KL P+G SC +G + D PRD RV LT G I + V W
Sbjct: 15 FLRNKSDAGSAFRTFLASVRANGVPSFVEI-VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRDVTW 210
BLAST of mRNA_H-elongata_contig68949.14537.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE) HSP 1 Score: 114 bits (285), Expect = 9.790e-26 Identity = 78/201 (38.81%), Postives = 108/201 (53.73%), Query Frame = 1
Query: 10 FLKHKSDATNSLRGIINDYFA---PEGLKIGVIHTDGGEEWHGQFLSFLSKLGMKRDSTPPYTPQYNCVVDRALGLLRDQTVA-------LLRGVMECKSDHLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLRRSKPGHKLDPRGASCIMLGLAPDCPRDTFRVRDLT-TGQILNRQAVPW 579
FL++KSDA ++ R + A P ++I V +GGE + G+F S ++L +K++ TP Y+PQYN V +R LGL+ + +A L V K+D LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P KL P+G SC +G + D PRD RV LT G I + V W
Sbjct: 282 FLRNKSDAGSAFRTFLASVRANGVPSFVEI-VRSDNGGEFFGGEFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRDVTW 477
BLAST of mRNA_H-elongata_contig68949.14537.1 vs. uniprot
Match: A0A6H5JV76_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV76_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.210e-25 Identity = 79/212 (37.26%), Postives = 110/212 (51.89%), Query Frame = 1
Query: 10 FLKHKSDATNSLRGIINDYFA---PEGLKIGVIHTDGGEEWHGQFLSFLSKLGMKRDSTPPYTPQYNCVVDRALGLLRDQTVA-------LLRGVMECKSDHLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLRRSKPGHKLDPRGASCIMLGLAPDCPRDTFRV----------RDLTTGQILNRQAVPWHP 585
FLK++SDA + R + A P ++I V +GGE + G+F S ++L +K++ TP Y+PQYN V +R LGL+ + +A L V K+D LWAEAM +AC+ N S+ SPYE+WYG P PF Y R +P KL P+G SC +G + D PRD RV RD+T ++L Q P P
Sbjct: 349 FLKNESDAGGAFRTFLASVRANIVPSFVEI-VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMSPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRVLTRARTIQKTRDVTW-EVLQSQLPPLQP 556
BLAST of mRNA_H-elongata_contig68949.14537.1 vs. uniprot
Match: A0A6H5KKZ9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKZ9_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.350e-25 Identity = 77/201 (38.31%), Postives = 104/201 (51.74%), Query Frame = 1
Query: 10 FLKHKSDATNSLRGIINDYFAPEGLK--IGVIHTD-GGEEWHGQFLSFLSKLGMKRDSTPPYTPQYNCVVDRALGLL-------RDQTVALLRGVMECKSDHLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLRRSKPGHKLDPRGASCIMLGLAPDCPRDTFRVRDLT-TGQILNRQAVPW 579
FLK+KSDA + R + A +G+ + ++ +D GGE + G F S ++L +K++ TP Y+PQYN V +R LGL+ R Q L V K+D LWAEAM AC+ N S SPYE+W+G P F Y R +P KL PRG +C +G + D PRD RV LT G I + V W
Sbjct: 15 FLKNKSDAGRAFRSFLVGVRA-DGIPSLVEIVRSDNGGECFGGDFTSVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLSKTDRLWAEAMHLACEAINHTACSPNSDSKSPYEMWHGEASHARPYP-FLKPAYCRWQRPS-KLLPRGEACCYVGPSRDHPRDCHRV--LTRVGTIQETRNVTW 210
BLAST of mRNA_H-elongata_contig68949.14537.1 vs. uniprot
Match: A0A6H5K2M6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M6_9PHAE) HSP 1 Score: 113 bits (282), Expect = 2.340e-25 Identity = 76/201 (37.81%), Postives = 107/201 (53.23%), Query Frame = 1
Query: 10 FLKHKSDATNSLRGIINDYFAPEGLK--IGVIHTD-GGEEWHGQFLSFLSKLGMKRDSTPPYTPQYNCVVDRALGLL-------RDQTVALLRGVMECKSDHLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLRRSKPGHKLDPRGASCIMLGLAPDCPRDTFRVRDLT-TGQILNRQAVPW 579
FLK KSDA ++ R + A +G+ + ++ +D GGE + G+F S ++L +K++ TP Y+PQYN V +R LGL+ R Q L V K+D LWAEAM +AC+ N S+ SPYE+W+G P F Y R +P KL P+G +C +G + D PRD RV LT G I + V W
Sbjct: 667 FLKSKSDAASAFRSFLASVRA-DGIPSLVEIVRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEAAAMAARIQAKVLFGHVQLPKTDRLWAEAMHWACEAINHTACSANPDSKSPYEMWHGEASHARPYP-FLKPAYCRWQRPS-KLLPKGEACFYVGPSRDHPRDCHRV--LTRVGTIQETRNVTW 862
BLAST of mRNA_H-elongata_contig68949.14537.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE) HSP 1 Score: 112 bits (280), Expect = 4.320e-25 Identity = 77/201 (38.31%), Postives = 107/201 (53.23%), Query Frame = 1
Query: 10 FLKHKSDATNSLRGIINDYFA---PEGLKIGVIHTDGGEEWHGQFLSFLSKLGMKRDSTPPYTPQYNCVVDRALGLLRDQTVA-------LLRGVMECKSDHLWAEAMAYACDMWNRCTSSSLDSGTSPYELWYGRRPTFNNIPPFGTVGYLRRSKPGHKLDPRGASCIMLGLAPDCPRDTFRVRDLT-TGQILNRQAVPW 579
FL++KSDA ++ R + A P ++I V +GGE + G+F S ++L +K++ TP Y+PQYN V +R LGL+ + +A L V K+D LWAEAM +AC+ N S+ PYE+WYG P PF Y R +P KL P+G SC +G + D PRD RV LT G I + V W
Sbjct: 227 FLRNKSDAGSAFRTFLASVRANGVPSFVEI-VRSDNGGEFFGGEFASVCNELLIKQEFTPAYSPQYNGVAERGLGLIEEAAMAARIQAKVLFGHVQLPKTDKLWAEAMHWACEAMNHTACSANPDSMPPYEMWYGE-PRPARPYPFLKPAYCRWQRPT-KLLPKGESCFYVGPSRDHPRDCHRV--LTRAGTIQETRDVTW 422 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68949.14537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68949.14537.1 >prot_H-elongata_contig68949.14537.1 ID=prot_H-elongata_contig68949.14537.1|Name=mRNA_H-elongata_contig68949.14537.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp MVRFLKHKSDATNSLRGIINDYFAPEGLKIGVIHTDGGEEWHGQFLSFLSback to top mRNA from alignment at H-elongata_contig68949:401..1024+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig68949.14537.1 ID=mRNA_H-elongata_contig68949.14537.1|Name=mRNA_H-elongata_contig68949.14537.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at H-elongata_contig68949:401..1024+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig68949:401..1024+ >mRNA_H-elongata_contig68949.14537.1 ID=mRNA_H-elongata_contig68949.14537.1|Name=mRNA_H-elongata_contig68949.14537.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig68949:401..1024+ (Himanthalia elongata Himel1 dioecious)back to top |