mRNA_H-elongata_contig68857.14524.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68857.14524.1
Unique NamemRNA_H-elongata_contig68857.14524.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68857.14524.1 vs. uniprot
Match: D7FUH7_ECTSI (VWFA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH7_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 1.030e-30
Identity = 60/76 (78.95%), Postives = 68/76 (89.47%), Query Frame = 1
Query:    1 QDVVIVLDISGSMSQYGRLDLAKDAAETVIQTLGADSFVNVVAFSEDARVLMPNTSTLVRATSDNIDELVGIVQEL 228
            +DVVIVLD+SGSMSQYGRLDLAK+AAETVI TLGADSFVNVV FSE ARVL+ N++TLVRAT DN+ ELV +VQ L
Sbjct:  114 KDVVIVLDVSGSMSQYGRLDLAKEAAETVINTLGADSFVNVVTFSETARVLLTNSTTLVRATEDNLGELVSLVQNL 189          
BLAST of mRNA_H-elongata_contig68857.14524.1 vs. uniprot
Match: A0A7S2LVH6_9STRA (Hypothetical protein (Fragment) n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LVH6_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.300e-14
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 QDVVIVLDISGSMSQYGRLDLAKDAAETVIQTLGADSFVNVVAFSEDARVLMPNTSTLVRATSDNIDELVGIVQEL 228
            +DVV+VLD+SGSMS YGR+DLAK+AA TVI+TL     V V+AFS+ A  ++P    LVRAT++N + L+  +Q+L
Sbjct:  261 KDVVLVLDVSGSMSDYGRMDLAKEAAITVIKTLTISDRVAVIAFSDYAYQVLPE-DLLVRATNENKNRLIDSIQQL 335          
BLAST of mRNA_H-elongata_contig68857.14524.1 vs. uniprot
Match: K0TQX2_THAOC (VWFA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TQX2_THAOC)

HSP 1 Score: 73.2 bits (178), Expect = 2.180e-13
Identity = 36/76 (47.37%), Postives = 52/76 (68.42%), Query Frame = 1
Query:    1 QDVVIVLDISGSMSQYGRLDLAKDAAETVIQTLGADSFVNVVAFSEDARVLMPNTSTLVRATSDNIDELVGIVQEL 228
            +DV++V+D+SGSM  +GRL LAK+AA TVI+TL       ++ FS +AR +   + TL+RAT DN D LV  ++ L
Sbjct:  194 KDVILVIDVSGSMGNHGRLSLAKEAATTVIETLTVADRFAIIPFSHEARFIGGPSETLLRATKDNKDRLVSEIENL 269          
BLAST of mRNA_H-elongata_contig68857.14524.1 vs. uniprot
Match: A0A7S2LVG3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LVG3_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 8.650e-12
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:    1 QDVVIVLDISGSMSQYGRLDLAKDAAETVIQTLGADSFVNVVAFSEDARVLMPN----TSTLVRATSDNIDELVGIVQEL 228
            +DV+IVLD+SGSMS YG++DLAK AA TV+ TL     V V+ FS+ A  +       T +L+RAT++N   L+  +++L
Sbjct:   56 KDVIIVLDVSGSMSNYGKMDLAKKAAITVVDTLTISDRVAVIVFSDSAYQVPVGVGGGTDSLIRATNENKKLLIESIRQL 135          
BLAST of mRNA_H-elongata_contig68857.14524.1 vs. uniprot
Match: A0A7S3LU80_9EUKA (Hypothetical protein n=5 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LU80_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 3.250e-11
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 QDVVIVLDISGSMSQYGRLDLAKDAAETVIQTLGADSFVNVVAFSEDARVLMPNTSTLVRATSDNIDELVGIVQEL 228
            +D+VI++D SGSM QYGR+D A +AA+ VI T  A+ +++VV FS  A       S LVRATSDN   L   V +L
Sbjct:  252 KDIVILIDKSGSMGQYGRMDKAIEAAQAVISTSSANDYISVVQFSSTAGTPACFPSRLVRATSDNKQALKDFVGDL 327          
BLAST of mRNA_H-elongata_contig68857.14524.1 vs. uniprot
Match: A0A7S3LUB0_9EUKA (Hypothetical protein n=4 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3LUB0_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 3.270e-11
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    1 QDVVIVLDISGSMSQYGRLDLAKDAAETVIQTLGADSFVNVVAFSEDARVLMPNTSTLVRATSDNIDELVGIVQEL 228
            +D+VI++D SGSM QYGR+D A +AA+ VI T  A+ +++VV FS  A       S LVRATSDN   L   V +L
Sbjct:  252 KDIVILIDKSGSMGQYGRMDKAIEAAQAVISTSSANDYISVVQFSSTAGTPACFPSRLVRATSDNKQALKDFVGDL 327          
BLAST of mRNA_H-elongata_contig68857.14524.1 vs. uniprot
Match: A0A6B2L926_9EUKA (VWFA domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L926_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 1.690e-10
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
Query:    1 QDVVIVLDISGSMSQYGRLDLAKDAAETVIQTLGADSFVNVVAFSEDARVLMPNTSTLVRATSDNIDELVGIVQEL 228
            +DVV+++D+SGSM+ + RL LAK AA TV++TL  + +V +V FS    V+      L+ AT  NID L G V  L
Sbjct:   75 KDVVLIVDVSGSMADFNRLSLAKSAATTVLRTLTINDYVGIVKFSTGPGVVGSPRGLLLPATQANIDSLSGAVDGL 150          
BLAST of mRNA_H-elongata_contig68857.14524.1 vs. uniprot
Match: A0A6B2L9Q3_9EUKA (VWFA domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L9Q3_9EUKA)

HSP 1 Score: 60.1 bits (144), Expect = 7.430e-9
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 QDVVIVLDISGSMSQYGRLDLAKDAAETVIQTLGADSFVNVVAFSEDARVLMPNTSTLVRATSDNIDEL 207
            +DV+I++D+SGSMS   R+ LAK+AA TV+ TL  + +V V+ FS DA ++   +   + A+  N+D L
Sbjct:   63 KDVIILIDVSGSMSYNNRMALAKEAALTVLDTLTMNDYVGVIQFSSDAHIVGAPSGFFLPASKTNLDSL 131          
BLAST of mRNA_H-elongata_contig68857.14524.1 vs. uniprot
Match: A0A6J2UQ43_CHACN (voltage-dependent calcium channel subunit alpha-2/delta-4 n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2UQ43_CHACN)

HSP 1 Score: 60.1 bits (144), Expect = 9.020e-9
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 QDVVIVLDISGSMSQYGRLDLAKDAAETVIQTLGADSFVNVVAFSEDARVLMPN-TSTLVRATSDNIDELVGIVQEL 228
            +D+VIV+DISGSM    RL +AK    T++ TLG + FVNV+A+S+  R + P    TLV+A  DN +    +V+EL
Sbjct:  239 KDIVIVVDISGSMKGL-RLTIAKHTINTILDTLGENDFVNVIAYSDYVRYVEPCFKGTLVQADLDNREHFKLLVEEL 314          
BLAST of mRNA_H-elongata_contig68857.14524.1 vs. uniprot
Match: A0A3P8VIG2_CYNSE (Calcium channel, voltage-dependent, alpha 2/delta subunit 4a n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3P8VIG2_CYNSE)

HSP 1 Score: 59.7 bits (143), Expect = 1.190e-8
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 QDVVIVLDISGSMSQYGRLDLAKDAAETVIQTLGADSFVNVVAFSEDARVLMPN-TSTLVRATSDNIDELVGIVQEL 228
            +DVVIV+D+SGSM    RL +AK    T++ TLG + FVN++A+S+  R + P    TLV+A  DN +    +V+EL
Sbjct:  214 KDVVIVVDVSGSMKGL-RLTIAKHTINTILDTLGENDFVNIIAYSDYVRYVEPCFKGTLVQADLDNREHFKLLVEEL 289          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68857.14524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUH7_ECTSI1.030e-3078.95VWFA domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2LVH6_9STRA1.300e-1453.95Hypothetical protein (Fragment) n=2 Tax=Skeletonem... [more]
K0TQX2_THAOC2.180e-1347.37VWFA domain-containing protein n=1 Tax=Thalassiosi... [more]
A0A7S2LVG3_9STRA8.650e-1245.00Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S3LU80_9EUKA3.250e-1148.68Hypothetical protein n=5 Tax=Palpitomonas bilix Ta... [more]
A0A7S3LUB0_9EUKA3.270e-1148.68Hypothetical protein n=4 Tax=Palpitomonas bilix Ta... [more]
A0A6B2L926_9EUKA1.690e-1044.74VWFA domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6B2L9Q3_9EUKA7.430e-942.03VWFA domain-containing protein (Fragment) n=1 Tax=... [more]
A0A6J2UQ43_CHACN9.020e-945.45voltage-dependent calcium channel subunit alpha-2/... [more]
A0A3P8VIG2_CYNSE1.190e-844.16Calcium channel, voltage-dependent, alpha 2/delta ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68857contigH-elongata_contig68857:15..942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.8e-24
Seed eggNOG ortholog2880.D7FUH7
KEGG koko:K04860
KEGG TC8.A.18.3
KEGG Pathwayko04010,ko04260,ko04261,ko04921,ko05410,ko05412,ko05414,map04010,map04260,map04261,map04921,map05410,map05412,map05414
EggNOG free text desc.voltage-gated calcium channel activity
EggNOG OGsKOG2353@1,KOG2353@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Hectar predicted targeting categoryother localisation
Exons2
Model size228
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931084.0090888-CDS-H-elongata_contig68857:14..1121622931084.0090888-CDS-H-elongata_contig68857:14..112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68857 15..112 +
1691679691.2668338-CDS-H-elongata_contig68857:14..1121691679691.2668338-CDS-H-elongata_contig68857:14..112Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68857 15..112 +
1622931084.0240464-CDS-H-elongata_contig68857:812..9421622931084.0240464-CDS-H-elongata_contig68857:812..942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68857 813..942 +
1691679691.278266-CDS-H-elongata_contig68857:812..9421691679691.278266-CDS-H-elongata_contig68857:812..942Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68857 813..942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68857.14524.1prot_H-elongata_contig68857.14524.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68857 15..942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68857.14524.1

>prot_H-elongata_contig68857.14524.1 ID=prot_H-elongata_contig68857.14524.1|Name=mRNA_H-elongata_contig68857.14524.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
QDVVIVLDISGSMSQYGRLDLAKDAAETVIQTLGADSFVNVVAFSEDARV
LMPNTSTLVRATSDNIDELVGIVQEL
back to top

mRNA from alignment at H-elongata_contig68857:15..942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68857.14524.1 ID=mRNA_H-elongata_contig68857.14524.1|Name=mRNA_H-elongata_contig68857.14524.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=928bp|location=Sequence derived from alignment at H-elongata_contig68857:15..942+ (Himanthalia elongata Himel1 dioecious)
CAGGATGTGGTAATCGTGCTGGATATCTCGGGCAGCATGTCCCAGTACGG ACGGTTAGATCTCGCCAAGGACGCCGCCGAGACGGTCATACAAACCCTGT GAGTTACAGTACAGCCTTCTTCATTCCCTTGCTGCACCTATATTTTCGTC ATTGCGCAAATCAGCACGCAGAGTCGTCCCCCATTGGGAGTGAGGATCAA TACTTTTAATGAGTGTAGCCTAGAATGACTAGCACGACTATGACAGTATA GGGCCGGATTGCGCGGTTATGTGCAATTTAATAAATAAGCACACGCACAC ACACACAATACATCGTTCTCCTTCGAACATCATGCGCACATCGTGGCCGA ATAGCCCCCAATTGGGTTCAATAAATCGCCAGCACACACGCCCAATACCC CGACAGACAGCTTAATTTCAGGGCTTAATTTGTTGTTGTTGTTGTTGTTG TTAGTGAAAAACAAATATGGTCACGACAGTGCGCTTCTTCGTTCTGGTCC CCCTGTCGTTAAACACATGTACTTTACTGACCTATATACTCACGTGTGAC GATTTTGTGCTCAAGGGTAGTAATGTACACATTCGAAATTGACGATAGTT CGTCCCCTGAACTGCACCTCTCATGGCGCTAAGAAGGCGTGGATGTTCGG AGGGTTGGAGCGAGTTCAAGTTTTTAAAAATAATAATGTCGTTACATAAA CGTAAGGTCGTTACGAGAGAGGGGTGTTCGATAATCTAACATTTCGTTAC AGTACATGATCTCGTTGTCATTATTGCTATGTCATGCCCTCGTCTCAGCG GCGCGGACTCCTTCGTAAACGTGGTGGCGTTCTCCGAGGACGCCAGGGTT CTCATGCCCAACACCTCGACGCTCGTGCGCGCAACGTCCGATAACATCGA TGAGCTCGTGGGGATCGTTCAGGAGCTT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig68857:15..942+

>mRNA_H-elongata_contig68857.14524.1 ID=mRNA_H-elongata_contig68857.14524.1|Name=mRNA_H-elongata_contig68857.14524.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig68857:15..942+ (Himanthalia elongata Himel1 dioecious)
CAGGATGTGGTAATCGTGCTGGATATCTCGGGCAGCATGTCCCAGTACGG
ACGGTTAGATCTCGCCAAGGACGCCGCCGAGACGGTCATACAAACCCTCA
GGATGTGGTAATCGTGCTGGATATCTCGGGCAGCATGTCCCAGTACGGAC
GGTTAGATCTCGCCAAGGACGCCGCCGAGACGGTCATACAAACCCTCGGC
GCGGACTCCTTCGTAAACGTGGTGGCGTTCTCCGAGGACGCCAGGGTTCT
CATGCCCAACACCTCGACGCTCGTGCGCGCAACGTCCGATAACATCGATG
AGCTCGTGGGGATCGTTCAGGAGCTTCGGCGCGGACTCCTTCGTAAACGT
GGTGGCGTTCTCCGAGGACGCCAGGGTTCTCATGCCCAACACCTCGACGC
TCGTGCGCGCAACGTCCGATAACATCGATGAGCTCGTGGGGATCGTTCAG
GAGCTT
back to top