prot_H-elongata_contig68828.14520.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig68828.14520.1
Unique Nameprot_H-elongata_contig68828.14520.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length144
Homology
[Close]
BLAST of mRNA_H-elongata_contig68828.14520.1 vs. uniprot
Match: D7FM11_ECTSI (mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM11_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 1.780e-52
Identity = 95/144 (65.97%), Postives = 113/144 (78.47%), Query Frame = 0 
Query:    1 QLSCSTSSVSLVLRDIHEKAKPPLEEARMSGNMRKAREFLVFNLASKLVDYAERDHFSSDSFKMAFPLACVAVDLMAEHGQLSEFFLGKLYGRCPSAVPAVSFNTAGLSDAEVMSMFGMLEGDDLSTYLNRTKGLIAMMGAVMQ 144
            +LS + S+V  V RDI  KA+ PL +AR +G   KA+EFL FNLA KLVDY+ERDHFS DS++MAFPLACVAVDLM EH  LSE FLG LY RCPSAVPA+SF+TAGLSD EVM++ G    +DL T+LNRTKGL+ +M AVMQ
Sbjct:  650 KLSATPSTVRQVARDIQVKAEAPLADARRAGWEAKAKEFLFFNLADKLVDYSERDHFSGDSYRMAFPLACVAVDLMEEHAGLSELFLGTLYLRCPSAVPALSFDTAGLSDREVMALLGQTRDEDLPTFLNRTKGLVVLMAAVMQ 793
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68828.14520.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM11_ECTSI1.780e-5265.97mRNA export factor GLE1 n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012476GLE1-likePFAMPF07817GLE1coord: 2..144
e-value: 5.4E-16
score: 58.6
IPR012476GLE1-likePANTHERPTHR12960GLE-1-RELATEDcoord: 25..144
IPR038506GLE1-like superfamilyGENE3D1.25.40.510coord: 1..144
e-value: 3.3E-12
score: 47.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68828contigH-elongata_contig68828:1402..2395 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68828.14520.1mRNA_H-elongata_contig68828.14520.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig68828 1402..2395 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig68828.14520.1 ID=prot_H-elongata_contig68828.14520.1|Name=mRNA_H-elongata_contig68828.14520.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
QLSCSTSSVSLVLRDIHEKAKPPLEEARMSGNMRKAREFLVFNLASKLVD
YAERDHFSSDSFKMAFPLACVAVDLMAEHGQLSEFFLGKLYGRCPSAVPA
VSFNTAGLSDAEVMSMFGMLEGDDLSTYLNRTKGLIAMMGAVMQ
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012476GLE1
IPR038506GLE1-like_sf