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Homology
BLAST of mRNA_H-elongata_contig68793.14516.1 vs. uniprot
Match: A0A6H5KHX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHX5_9PHAE) HSP 1 Score: 101 bits (252), Expect = 2.150e-18 Identity = 161/440 (36.59%), Postives = 187/440 (42.50%), Query Frame = 1
Query: 1039 EYTHSHGQLGVPHRPQLQHFVQGEGSAAAMMQR----RPLPRDDVRSSPQGYRDHAPLQQPRGYGSTTEYGFLAPHVNQLGSSHGYGLAA-GGQSDVPNVPVSGVLGERGSLRPPQPRIPVQHPRARRPLPPST-------PPVRGVSVMDAG-----LEGGKQGESLSPFLGHQPHQPSSQHLRPPLPPSVSSAFSQPFQPLDW---------------------------------EIGQSAHGDV-----GAGIGGGGHSHGYGAQRS--------VQYSHQQGGDMG-GDDD--RGGAEAAGAGTLDMIRSGGAGVAGAGXXXXXGGRLPGGGDLGQNIVQQHF--------GRDVSPGPF--AGSEVNGGXXXXXSHGTVATARVGMSSPP--GSINDASVSGSIGATVGRPLSPLMATLG-DSGGSPPDLPRLR 2121
EY+H LG+P QH M RPL RD YRD QQ YG YGFL PH++ GS GYG A GG + V G G L P ARRP PPS P + G +MD ++ G+QG SLSPF+GHQ SS HLR PLPP+++ F FQ LDW EIG G G G+ GGG + G G S V Y HQ+ GDMG G DD RGG A G LDM SGG XXXX G RLPG DLGQ ++ HF GRD SPGPF G+EV XXXX G+ + A GRP+SPLM+TLG +SG +PP L RLR
Sbjct: 625 EYSHP---LGIPPPRSSQHXXXXXXXXXXMTGGGGGLRPLARDS-----HFYRDQLQQQQQHLYGPNP-YGFL-PHMSS-GSQGGYGPGAIGGDNGEGLSDVVFSCGVGGVLF---------MPHARRPFPPSPGRSGGGIPGMPGGXMMDXXXXXXXMDVGRQGGSLSPFIGHQ-SSASSSHLRLPLPPAMNGPFQSSFQALDWDDPSGSGXXXXXXXXXXXXXXXXXXXWWPSLPLEIGDDPWGAASTERRGVGMQGGGSAGGDGGWPSEAAVPLSHVDYPHQEAGDMGMGRDDGRRGGGPAEGG--LDMEGSGGPXXX---XXXXFGTRLPGV-DLGQGMIP-HFDRMHGIGGGRDSSPGPFHSIGAEVGAASXXXXXXXXXXXXXXXXXXXXXXGAXGETDALNXXXA-AGRPMSPLMSTLGGESGETPPGLARLR 1035
BLAST of mRNA_H-elongata_contig68793.14516.1 vs. uniprot
Match: D7G0X0_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0X0_ECTSI) HSP 1 Score: 91.7 bits (226), Expect = 2.370e-15 Identity = 130/346 (37.57%), Postives = 158/346 (45.66%), Query Frame = 1
Query: 1279 GYGLAAGGQSDVP-----NVPVSGVLGERGSLRPPQP----RIPVQHPRARRPLPPST-------PPVRGVSVMDAG----LEGGKQGESLSPFLGHQPHQPSSQHLRPPLPPSVSSAFSQPFQPLDWEIGQSAHGDVG---------AGIGGGGHSHGYGAQRS--------VQYSHQQGGDMG--GDDDRGGAEAAGAGTLDMIRSGGAGVAGAGXXXXXGGRLPGGGDLGQNIVQQHF--------GRDVSPGPF--AGSEVNGGXXXXXSHGTVAT---------------ARVGMSSPPGSINDASVSGSIGATVGRPLSPLMATLG-DSGGSPPDLPRLR 2121
GYG A G + P ++PVSGVL R L PP R PV P ARRPLPPS P + G ++D ++ G+QG SLSPF+GHQ SS HLR PLPP+++ F FQ LDW+ + G+ G S V Y HQ+ GDMG DD R G + A G LD+ GG XXXX G RLPG DLGQ ++ HF GR SPGPF G++V G XXXX A SS G DA + GR +SPLM+TLG +SG +PP L RLR
Sbjct: 403 GYGPGAIGGDNGPEIGGGSIPVSGVLSGRAILPPPSQQSSSRGPVAQPHARRPLPPSPGRSGGGIPGMPGSGMLDGXXXXXMDVGRQGGSLSPFIGHQSSSASS-HLRLPLPPAMNGPFQPSFQALDWDDPSGSXXXXXXXXXXXXXXVGVQGXXXXXXXXXWPSEAAVPLSHVDYPHQEAGDMGMGRDDGRRGGDPADGG-LDVEGGGGPXXX---XXXXFGTRLPGV-DLGQGMMP-HFDRMHGIGGGRGSSPGPFHSMGADVGGASXXXXXXXXXXXXXXXXXXXXXXXXXXAMHSSSSGAGGEIDAL---NXXXXXGRSMSPLMSTLGGESGETPPGLARLR 738
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | EsV-1-7 domain protein |
| Ec32 ortholog | Ec-23_001980.1 |
| Exons | 1 |
| Model size | 2121 |
| Cds size | 2121 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931082.5677385-CDS-H-elongata_contig68793:732..2853 | 1622931082.5677385-CDS-H-elongata_contig68793:732..2853 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig68793 733..2853 + |
| 1691679690.69653-CDS-H-elongata_contig68793:732..2853 | 1691679690.69653-CDS-H-elongata_contig68793:732..2853 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig68793 733..2853 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68793.14516.1 >prot_H-elongata_contig68793.14516.1 ID=prot_H-elongata_contig68793.14516.1|Name=mRNA_H-elongata_contig68793.14516.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=707bp
KPIYGYEGEKATFCPMHRLDSMMDVVNRHCEYPGCTKTPSYGFVGERAQF CSHHHLPDMEDVKNRRCEWHECRRYPIFGHEGERARFCSAHKSEEMVNVR NRRCEDGNCNKLPTHGLPGEKAKACQAHAHPGMVNLKGRKTAIATNLPKR EGDVNIRLGAMPPGGVGARSGRPSEHDFDPGVLLGDAGVVGGGGGSGSGL SGDRQDQMGGYWGLGHRIGGARGAAGAATASISGAGGARGPAGDESDVYS SNEISLMGWGMRTGGGGMGLAASDSASSTGVLGDRKYSNPDNRLRRLTSD VALRDQRLRQERDLKEQQIRAMQSSGHHRRVVAPSALDPNFYGSTGEYTH SHGQLGVPHRPQLQHFVQGEGSAAAMMQRRPLPRDDVRSSPQGYRDHAPL QQPRGYGSTTEYGFLAPHVNQLGSSHGYGLAAGGQSDVPNVPVSGVLGER GSLRPPQPRIPVQHPRARRPLPPSTPPVRGVSVMDAGLEGGKQGESLSPF LGHQPHQPSSQHLRPPLPPSVSSAFSQPFQPLDWEIGQSAHGDVGAGIGG GGHSHGYGAQRSVQYSHQQGGDMGGDDDRGGAEAAGAGTLDMIRSGGAGV AGAGGGGGVGGRLPGGGDLGQNIVQQHFGRDVSPGPFAGSEVNGGGGGGG SHGTVATARVGMSSPPGSINDASVSGSIGATVGRPLSPLMATLGDSGGSP PDLPRLR back to topmRNA from alignment at H-elongata_contig68793:733..2853+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig68793.14516.1 ID=mRNA_H-elongata_contig68793.14516.1|Name=mRNA_H-elongata_contig68793.14516.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2121bp|location=Sequence derived from alignment at H-elongata_contig68793:733..2853+ (Himanthalia elongata Himel1 dioecious) AAGCCGATCTACGGGTATGAGGGCGAGAAAGCGACTTTCTGCCCGATGCA
CCGCCTGGACTCTATGATGGACGTGGTCAACCGTCACTGCGAGTACCCCG
GATGCACAAAAACCCCCAGCTACGGTTTCGTGGGGGAGCGAGCGCAGTTT
TGCTCTCACCACCACCTGCCGGACATGGAAGACGTAAAAAACCGCCGCTG
CGAGTGGCACGAGTGCCGCCGTTACCCCATATTTGGCCACGAAGGAGAGC
GCGCGCGGTTTTGCTCTGCCCACAAGAGCGAGGAGATGGTGAACGTCCGC
AACCGGCGGTGCGAGGACGGAAACTGCAACAAACTTCCCACCCACGGCCT
TCCAGGCGAAAAGGCCAAGGCCTGCCAGGCACACGCCCACCCCGGGATGG
TGAATCTCAAAGGCCGTAAGACCGCGATCGCAACTAACCTACCAAAGCGA
GAAGGAGACGTGAACATTCGTTTGGGTGCCATGCCTCCGGGCGGCGTCGG
CGCGAGGTCCGGGCGACCATCTGAACACGACTTCGACCCCGGCGTTCTCC
TCGGAGATGCTGGCGTCGTTGGAGGGGGAGGGGGAAGCGGGAGCGGTCTA
TCGGGGGATCGGCAGGATCAGATGGGAGGCTACTGGGGCTTGGGCCACAG
GATAGGCGGGGCGCGAGGAGCCGCAGGCGCCGCCACTGCCTCGATTAGTG
GAGCTGGCGGTGCCCGTGGACCTGCGGGTGACGAGAGCGATGTCTACAGC
AGTAACGAGATCTCGCTAATGGGATGGGGAATGCGCACGGGAGGAGGTGG
TATGGGGTTGGCAGCAAGCGATAGCGCCAGCTCGACCGGCGTCCTGGGGG
ACAGGAAGTACTCGAATCCGGACAACCGCCTGAGAAGACTAACGTCAGAT
GTAGCATTACGGGATCAACGACTGAGGCAGGAGCGGGATCTGAAGGAGCA
GCAGATCCGGGCAATGCAGTCTAGCGGCCACCATCGCCGGGTGGTAGCAC
CCTCTGCACTCGACCCGAACTTTTATGGTTCTACGGGTGAGTATACACAC
TCGCACGGCCAGCTTGGAGTACCGCATCGACCTCAGCTGCAGCACTTCGT
TCAAGGGGAAGGGTCCGCGGCGGCGATGATGCAGCGGAGGCCCTTACCTC
GCGATGATGTGCGCTCATCCCCGCAGGGTTACCGCGATCACGCACCGCTG
CAACAACCGCGCGGGTACGGCAGCACAACCGAATACGGCTTCCTAGCCCC
CCACGTAAACCAGTTGGGCAGCTCCCATGGGTACGGATTAGCAGCCGGTG
GTCAAAGCGATGTCCCCAACGTGCCAGTTTCGGGCGTCCTGGGGGAGCGG
GGGAGCTTACGCCCCCCTCAGCCTCGAATACCTGTTCAGCATCCGCGCGC
GCGACGGCCCCTACCACCGTCTACGCCTCCTGTTCGAGGCGTATCAGTGA
TGGACGCTGGTCTAGAGGGGGGGAAGCAGGGAGAGAGCTTGTCCCCATTC
CTCGGGCACCAGCCTCACCAGCCATCGTCGCAGCATCTTCGACCCCCGCT
GCCGCCCTCCGTGTCCTCTGCCTTTTCTCAACCGTTTCAGCCATTGGACT
GGGAGATTGGTCAAAGCGCACACGGCGACGTGGGCGCAGGGATTGGCGGT
GGGGGGCACAGCCACGGCTACGGTGCCCAACGTAGCGTACAGTATTCCCA
CCAACAAGGAGGAGACATGGGGGGGGATGACGACCGAGGGGGCGCTGAGG
CCGCCGGTGCGGGTACGCTAGATATGATCCGCAGCGGGGGGGCGGGCGTC
GCCGGCGCGGGTGGCGGTGGGGGCGTCGGGGGGCGGTTACCCGGGGGGGG
TGATCTTGGACAGAACATAGTGCAGCAGCACTTCGGGCGAGACGTGTCCC
CAGGTCCGTTCGCAGGATCGGAGGTGAATGGCGGAGGAGGAGGAGGAGGC
TCACACGGAACAGTGGCGACGGCAAGGGTGGGCATGTCCTCCCCTCCCGG
ATCTATAAACGATGCGTCGGTTTCTGGGTCTATCGGAGCTACAGTCGGTC
GCCCTCTCTCCCCGCTCATGGCAACCCTGGGAGACTCCGGTGGGTCGCCG
CCCGACCTCCCGCGGCTCCGA back to topCoding sequence (CDS) from alignment at H-elongata_contig68793:733..2853+ >mRNA_H-elongata_contig68793.14516.1 ID=mRNA_H-elongata_contig68793.14516.1|Name=mRNA_H-elongata_contig68793.14516.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=4242bp|location=Sequence derived from alignment at H-elongata_contig68793:733..2853+ (Himanthalia elongata Himel1 dioecious) AAGCCGATCTACGGGTATGAGGGCGAGAAAGCGACTTTCTGCCCGATGCA CCGCCTGGACTCTATGATGGACGTGGTCAACCGTCACTGCGAGTACCCCG GATGCACAAAAACCCCCAGCTACGGTTTCGTGGGGGAGCGAGCGCAGTTT TGCTCTCACCACCACCTGCCGGACATGGAAGACGTAAAAAACCGCCGCTG CGAGTGGCACGAGTGCCGCCGTTACCCCATATTTGGCCACGAAGGAGAGC GCGCGCGGTTTTGCTCTGCCCACAAGAGCGAGGAGATGGTGAACGTCCGC AACCGGCGGTGCGAGGACGGAAACTGCAACAAACTTCCCACCCACGGCCT TCCAGGCGAAAAGGCCAAGGCCTGCCAGGCACACGCCCACCCCGGGATGG TGAATCTCAAAGGCCGTAAGACCGCGATCGCAACTAACCTACCAAAGCGA GAAGGAGACGTGAACATTCGTTTGGGTGCCATGCCTCCGGGCGGCGTCGG CGCGAGGTCCGGGCGACCATCTGAACACGACTTCGACCCCGGCGTTCTCC TCGGAGATGCTGGCGTCGTTGGAGGGGGAGGGGGAAGCGGGAGCGGTCTA TCGGGGGATCGGCAGGATCAGATGGGAGGCTACTGGGGCTTGGGCCACAG GATAGGCGGGGCGCGAGGAGCCGCAGGCGCCGCCACTGCCTCGATTAGTG GAGCTGGCGGTGCCCGTGGACCTGCGGGTGACGAGAGCGATGTCTACAGC AGTAACGAGATCTCGCTAATGGGATGGGGAATGCGCACGGGAGGAGGTGG TATGGGGTTGGCAGCAAGCGATAGCGCCAGCTCGACCGGCGTCCTGGGGG ACAGGAAGTACTCGAATCCGGACAACCGCCTGAGAAGACTAACGTCAGAT GTAGCATTACGGGATCAACGACTGAGGCAGGAGCGGGATCTGAAGGAGCA GCAGATCCGGGCAATGCAGTCTAGCGGCCACCATCGCCGGGTGGTAGCAC CCTCTGCACTCGACCCGAACTTTTATGGTTCTACGGGTGAGTATACACAC TCGCACGGCCAGCTTGGAGTACCGCATCGACCTCAGCTGCAGCACTTCGT TCAAGGGGAAGGGTCCGCGGCGGCGATGATGCAGCGGAGGCCCTTACCTC GCGATGATGTGCGCTCATCCCCGCAGGGTTACCGCGATCACGCACCGCTG CAACAACCGCGCGGGTACGGCAGCACAACCGAATACGGCTTCCTAGCCCC CCACGTAAACCAGTTGGGCAGCTCCCATGGGTACGGATTAGCAGCCGGTG GTCAAAGCGATGTCCCCAACGTGCCAGTTTCGGGCGTCCTGGGGGAGCGG GGGAGCTTACGCCCCCCTCAGCCTCGAATACCTGTTCAGCATCCGCGCGC GCGACGGCCCCTACCACCGTCTACGCCTCCTGTTCGAGGCGTATCAGTGA TGGACGCTGGTCTAGAGGGGGGGAAGCAGGGAGAGAGCTTGTCCCCATTC CTCGGGCACCAGCCTCACCAGCCATCGTCGCAGCATCTTCGACCCCCGCT GCCGCCCTCCGTGTCCTCTGCCTTTTCTCAACCGTTTCAGCCATTGGACT GGGAGATTGGTCAAAGCGCACACGGCGACGTGGGCGCAGGGATTGGCGGT GGGGGGCACAGCCACGGCTACGGTGCCCAACGTAGCGTACAGTATTCCCA CCAACAAGGAGGAGACATGGGGGGGGATGACGACCGAGGGGGCGCTGAGG CCGCCGGTGCGGGTACGCTAGATATGATCCGCAGCGGGGGGGCGGGCGTC GCCGGCGCGGGTGGCGGTGGGGGCGTCGGGGGGCGGTTACCCGGGGGGGG TGATCTTGGACAGAACATAGTGCAGCAGCACTTCGGGCGAGACGTGTCCC CAGGTCCGTTCGCAGGATCGGAGGTGAATGGCGGAGGAGGAGGAGGAGGC TCACACGGAACAGTGGCGACGGCAAGGGTGGGCATGTCCTCCCCTCCCGG ATCTATAAACGATGCGTCGGTTTCTGGGTCTATCGGAGCTACAGTCGGTC GCCCTCTCTCCCCGCTCATGGCAACCCTGGGAGACTCCGGTGGGTCGCCG CCCGACCTCCCGCGGCTCCGAAAGCCGATCTACGGGTATGAGGGCGAGAA AGCGACTTTCTGCCCGATGCACCGCCTGGACTCTATGATGGACGTGGTCA ACCGTCACTGCGAGTACCCCGGATGCACAAAAACCCCCAGCTACGGTTTC GTGGGGGAGCGAGCGCAGTTTTGCTCTCACCACCACCTGCCGGACATGGA AGACGTAAAAAACCGCCGCTGCGAGTGGCACGAGTGCCGCCGTTACCCCA TATTTGGCCACGAAGGAGAGCGCGCGCGGTTTTGCTCTGCCCACAAGAGC GAGGAGATGGTGAACGTCCGCAACCGGCGGTGCGAGGACGGAAACTGCAA CAAACTTCCCACCCACGGCCTTCCAGGCGAAAAGGCCAAGGCCTGCCAGG CACACGCCCACCCCGGGATGGTGAATCTCAAAGGCCGTAAGACCGCGATC GCAACTAACCTACCAAAGCGAGAAGGAGACGTGAACATTCGTTTGGGTGC CATGCCTCCGGGCGGCGTCGGCGCGAGGTCCGGGCGACCATCTGAACACG ACTTCGACCCCGGCGTTCTCCTCGGAGATGCTGGCGTCGTTGGAGGGGGA GGGGGAAGCGGGAGCGGTCTATCGGGGGATCGGCAGGATCAGATGGGAGG CTACTGGGGCTTGGGCCACAGGATAGGCGGGGCGCGAGGAGCCGCAGGCG CCGCCACTGCCTCGATTAGTGGAGCTGGCGGTGCCCGTGGACCTGCGGGT GACGAGAGCGATGTCTACAGCAGTAACGAGATCTCGCTAATGGGATGGGG AATGCGCACGGGAGGAGGTGGTATGGGGTTGGCAGCAAGCGATAGCGCCA GCTCGACCGGCGTCCTGGGGGACAGGAAGTACTCGAATCCGGACAACCGC CTGAGAAGACTAACGTCAGATGTAGCATTACGGGATCAACGACTGAGGCA GGAGCGGGATCTGAAGGAGCAGCAGATCCGGGCAATGCAGTCTAGCGGCC ACCATCGCCGGGTGGTAGCACCCTCTGCACTCGACCCGAACTTTTATGGT TCTACGGGTGAGTATACACACTCGCACGGCCAGCTTGGAGTACCGCATCG ACCTCAGCTGCAGCACTTCGTTCAAGGGGAAGGGTCCGCGGCGGCGATGA TGCAGCGGAGGCCCTTACCTCGCGATGATGTGCGCTCATCCCCGCAGGGT TACCGCGATCACGCACCGCTGCAACAACCGCGCGGGTACGGCAGCACAAC CGAATACGGCTTCCTAGCCCCCCACGTAAACCAGTTGGGCAGCTCCCATG GGTACGGATTAGCAGCCGGTGGTCAAAGCGATGTCCCCAACGTGCCAGTT TCGGGCGTCCTGGGGGAGCGGGGGAGCTTACGCCCCCCTCAGCCTCGAAT ACCTGTTCAGCATCCGCGCGCGCGACGGCCCCTACCACCGTCTACGCCTC CTGTTCGAGGCGTATCAGTGATGGACGCTGGTCTAGAGGGGGGGAAGCAG GGAGAGAGCTTGTCCCCATTCCTCGGGCACCAGCCTCACCAGCCATCGTC GCAGCATCTTCGACCCCCGCTGCCGCCCTCCGTGTCCTCTGCCTTTTCTC AACCGTTTCAGCCATTGGACTGGGAGATTGGTCAAAGCGCACACGGCGAC GTGGGCGCAGGGATTGGCGGTGGGGGGCACAGCCACGGCTACGGTGCCCA ACGTAGCGTACAGTATTCCCACCAACAAGGAGGAGACATGGGGGGGGATG ACGACCGAGGGGGCGCTGAGGCCGCCGGTGCGGGTACGCTAGATATGATC CGCAGCGGGGGGGCGGGCGTCGCCGGCGCGGGTGGCGGTGGGGGCGTCGG GGGGCGGTTACCCGGGGGGGGTGATCTTGGACAGAACATAGTGCAGCAGC ACTTCGGGCGAGACGTGTCCCCAGGTCCGTTCGCAGGATCGGAGGTGAAT GGCGGAGGAGGAGGAGGAGGCTCACACGGAACAGTGGCGACGGCAAGGGT GGGCATGTCCTCCCCTCCCGGATCTATAAACGATGCGTCGGTTTCTGGGT CTATCGGAGCTACAGTCGGTCGCCCTCTCTCCCCGCTCATGGCAACCCTG GGAGACTCCGGTGGGTCGCCGCCCGACCTCCCGCGGCTCCGA back to top
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