mRNA_H-elongata_contig6876.14512.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6876.14512.1
Unique NamemRNA_H-elongata_contig6876.14512.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A6H5L2J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2J7_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 2.670e-62
Identity = 171/298 (57.38%), Postives = 194/298 (65.10%), Query Frame = 1
Query:   85 IQGCYSGHGKATFRSGNSYIGEFRRGAMDGRGRYIWKSNGTIYEGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRYVXXXXXXXXXXXXXXXXXNGRTFEGRFKDDFMVGKMCQDEERPELSSSVKLNISDIVRCGHEVDATAIVREVE 978
            +   YSG G+A FRSGN Y GEFRRG MDGRG Y W S+GT+               XXX++G                                       G QRYGVGT  VSS+ XXXXXXXXXXXXXX  ASGN YEG WVEDHK G G M W  RRER  XXXXXXXXXXXX     E+RP + +++DTQKQMCNVYRG+WL GMRHGQGTF+YAD SR+ XXXXXXXXXXXXXXXXXNGRTFEG F DD M+GK+ QD+E PELS++VKL I+DI+  G EV   A VR+VE
Sbjct:   12 LSSSYSGQGEALFRSGNKYSGEFRRGVMDGRGCYTWISDGTVXXXXXXXXXXXXXXXXXXSDGSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEQRYGVGTKDVSSYXXXXXXXXXXXXXXXXXASGNVYEGEWVEDHKEGMGVMNWKERRERYTXXXXXXXXXXXXEHVWIEERPVSAVSMDTQKQMCNVYRGEWLDGMRHGQGTFMYADGSRHTXXXXXXXXXXXXXXXXXNGRTFEGLFDDDVMLGKVGQDDEHPELSAAVKLKIADILSSGTEVARAAAVRDVE 309          
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: D7FIY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY9_ECTSI)

HSP 1 Score: 173 bits (439), Expect = 1.070e-44
Identity = 152/276 (55.07%), Postives = 173/276 (62.68%), Query Frame = 1
Query:   85 IQGCYSGHGKATFRSGNSYIGEFRRGAMDGRGRYIWKSNGTIYEGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRYVXXXXXXXXXXXXXXXXXNGRTFEGRFKDDFMVGKMCQDEERPELSSSVKL 912
            +   YSG G+A FRSGN Y GEFRRG MDGRG Y W S+GT+               XXX++G +                                     G QRYGV T  VSS+ XXXXXXXXXXXX  TYASGN YE      HK G G M WV RRER  XXXXXXXXXXXXXXXXX +RP + +++DTQKQMCNVYRG+WL GMRHGQGTF+YAD SR+ XXXXXXXXXXXXXXXXX GRTFEG F DD M+GK+ Q      ++S +KL
Sbjct:   12 LSSSYSGQGEALFRSGNKYSGEFRRGVMDGRGCYTWISDGTVXXXXXXXXXXXXXXXXXXSDGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGEQRYGVSTKEVSSYXXXXXXXXXXXXXTMTYASGNVYEXXXXXXHKEGMGVMNWVERRERYTXXXXXXXXXXXXXXXXXXERPVSAVSMDTQKQMCNVYRGEWLDGMRHGQGTFMYADGSRHTXXXXXXXXXXXXXXXXXXGRTFEGLFDDDAMLGKVGQ------INSDLKL 281          
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: D0NR05_PHYIT (Radial spoke head 10 family protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=D0NR05_PHYIT)

HSP 1 Score: 111 bits (277), Expect = 2.550e-23
Identity = 112/323 (34.67%), Postives = 152/323 (47.06%), Query Frame = 1
Query:   31 LGPELGSLIVDEYVGDT-DIQGC----YSGHGKATFRSGNSYIGEFRRGAMDGRGRYIWKSNGTIYEGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSAD------------------------------GTLV------YEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPET------PLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRYVXXXXXXXXXXXXXXXXXNGRTFEGRFKDDFMV 858
            L P + + +V  Y G+T  +  C    Y G G+  F++G +Y G+F  G M G G   W ++G +YEG+F++NE+ GIG     NG SY G V  G R+G G+F + D                              G +V      Y+G W++   HGYG   +    +    + XXXXXXXXXX     YA G+ Y G W  D K+G+G MTW+  R                      D  E        +   +     N Y G++  G+RHG+G F YA+ +R  XXXXXXXXXXXXXXXXX  R F G F+ D  V
Sbjct:    6 LDPRVLANVVTSYDGETLQVPDCDVPVYHGKGRLEFKTGFTYTGDFVHGRMHGTGHIEWLTSGVVYEGEFARNEITGIGTYWWPNGSSYVGDVKCGKRHGHGVFVTGDHVPKPLLFAFHSPEYQGGGGESLEEMNGGEGVVVAQSNARYDGEWENGLPHGYGELTFDAARNI--RYEXXXXXXXXXXRGHMHYADGSVYAGDWKADVKSGQGVMTWMTTRGADEVSSANATPLERYDGEWENDCQEGFGRHVWLVNPLSGSSNKNWYEGEFHEGLRHGRGVFFYANGARXXXXXXXXXXXXXXXXXXXXXRVFVGLFRQDRSV 326          
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A3P3XZ51_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3XZ51_PLABS)

HSP 1 Score: 88.6 bits (218), Expect = 9.700e-16
Identity = 97/215 (45.12%), Postives = 111/215 (51.63%), Query Frame = 1
Query:  163 AMDGRGRYIWK--SNGTIYEGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSAD-------GTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXE----DRPETPLAIDTQK--QMCNVYRGQWLAGMRHGQGTFLYADESRYV 762
            A DG     W   S G  + GD     L G G         Y G V  G+R+G G  T +D        T  Y G W D +RHG G  R  VG +      XXXXXXXXXX     Y SGN Y+G WV D K+G G MTW    E XXXXXXXXXXXXXXXXXXX+    D        D     Q CN YRG+++AG RHGQGTF YA+ + Y 
Sbjct:   11 ADDGTNTLTWDDVSPGCTFTGDIGAGSLDGAGTYRWGPSSVYVGDVAGGMRSGNGKQTHSDIAVDGDRVTSTYTGTWLDGRRHGKG--RLTVGNAVXXXXXXXXXXXXXXXQK---YGSGNTYDGDWVADLKHGYGVMTWSTTNEVXXXXXXXXXXXXXXXXXXXKISGADAVSKTSTADAMPHLQTCNQYRGEFVAGARHGQGTFTYANGAVYT 220          
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A3M7QW85_BRAPC (Radial spoke head 10-like protein (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7QW85_BRAPC)

HSP 1 Score: 80.1 bits (196), Expect = 2.460e-13
Identity = 92/247 (37.25%), Postives = 121/247 (48.99%), Query Frame = 1
Query:   37 PELGSLIVDEYVGDTDIQGCYSGHGKATFRSGN-SYIGEFRRGAMDGRGRYIWKSNGTIYEGDFSKNELVGIGLXXXNNG-----CSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRY 759
            P L S+IV+ Y GD D +G + G GKA ++ G+                                         X  N G      +Y G V+ G R+G G+F S + +++Y+G W   KR+G G   Y   T  +S + XXXXXXXX       Y SGN Y        ++GEGTM W  + + XXXXXXXXXXXXXXXXXX   R E      TQ  + N Y G +  G RHGQGT+LYA+ ++Y
Sbjct:   74 PVLTSIIVENYEGDKD-KGLFEGFGKAFYKGGSIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCFNTGEPSEWSTYRGQVLKGKRHGHGVFKSGNSSVIYDGEWNMGKRYGKGKMIYD--TKGLSYYEXXXXXXXXFGWGIRHYPSGNIYXXXXXXXVRHGEGTMRWFDKNQTXXXXXXXXXXXXXXXXXXYLSRVEM-----TQYSLRNSYFGNFKNGKRHGQGTYLYANGTKY 312          
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A7S4QKF5_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4QKF5_9DINO)

HSP 1 Score: 73.9 bits (180), Expect = 9.500e-11
Identity = 86/226 (38.05%), Postives = 113/226 (50.00%), Query Frame = 1
Query:  100 SGHGKATFRSGNSYIGEFRRGAMDGR------GRYIWKSNGTIYEGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVH----RRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYAD 747
            S H   TF +G++Y G  R+ A+  R      G Y W + G  YEG F  +++ G G   X           +G RNGEG++ +ADG   Y+G W+D KRHG+G   Y    +      XXXXXXXXXX     + S N                 TW+      +  XXXXXXXXXXXXXXXX   +  P+        +QM N Y G+W  G+RHG+GTF YA+
Sbjct:   46 SKHVTCTF-AGSNYTGVLRQDALGARSLEGPSGTYTW-TTGVRYEGPFVGSQVDGRGKLSXXXXXXXXXXXXNGKRNGEGVYVAADGVTRYQGQWRDGKRHGHGCLTYDA--NGEXXXXXXXXXXXXXXAGYQVWPSKNAXXXXXXXXXXXXXXXXTWLDGDLVEQYCXXXXXXXXXXXXXXXXFAPQPLPDRSTREMPSQQMNNRYEGEWHNGVRHGRGTFSYAN 267          
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A3Q4AHB1_MOLML (Radial spoke head 10 homolog B n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q4AHB1_MOLML)

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-9
Identity = 71/196 (36.22%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  178 GRYIWKSNGTIY--EGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRY 759
            G ++++S G     +G+F  N   G G     +G SYEG V +G+R+G G +  A  ++ Y G W   KRHG GV  Y       S +                Y SGN Y             TM W++  +  XXXXXXXXXXXXXXXXX   +     A  +Q  M N Y+G ++ G RHGQGT  YA  + Y
Sbjct:   11 GGHVYESCGEFLTKQGEFVCNMPKGRGTYTWLDGSSYEGEVHNGIRHGTGTYKCAKTSVSYTGQWDQGKRHGQGVLYYNQ--DKTSWYNGDWVKNSREGWGMRRYPSGNIYCXXXXXXXXXXXXTMRWLNLDQHYXXXXXXXXXXXXXXXXXILRQ-----ATGSQSLMSNQYKGDFVQGQRHGQGTIYYACGATY 199          
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A3Q3VNT6_MOLML (Radial spoke head 10 homolog B n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3VNT6_MOLML)

HSP 1 Score: 70.1 bits (170), Expect = 1.160e-9
Identity = 71/196 (36.22%), Postives = 94/196 (47.96%), Query Frame = 1
Query:  178 GRYIWKSNGTIY--EGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRY 759
            G ++++S G     +G+F  N   G G     +G SYEG V +G+R+G G +  A  ++ Y G W   KRHG GV  Y       S +                Y SGN Y             TM W++  +  XXXXXXXXXXXXXXXXX   +     A  +Q  M N Y+G ++ G RHGQGT  YA  + Y
Sbjct:   11 GGHVYESCGEFLTKQGEFVCNMPKGRGTYTWLDGSSYEGEVHNGIRHGTGTYKCAKTSVSYTGQWDQGKRHGQGVLYYNQ--DKTSWYNGDWVKNSREGWGMRRYPSGNIYCXXXXXXXXXXXXTMRWLNLDQHYXXXXXXXXXXXXXXXXXILRQ-----ATGSQSLMSNQYKGDFVQGQRHGQGTIYYACGATY 199          
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A821ZQE2_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A821ZQE2_9BILA)

HSP 1 Score: 67.0 bits (162), Expect = 1.260e-9
Identity = 59/161 (36.65%), Postives = 80/161 (49.69%), Query Frame = 1
Query:  280 YEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRYV 762
            Y+G V  G R+G G+F      L YEG W+       G  ++G      + +                YASGN YEG WV   ++G G  +W +      XXXXXXXXXXXXXXXX   R E     ++Q  + N Y G +L G R+G GTF Y+  ++Y+
Sbjct:   12 YQGDVYRGRRHGTGIFRHGKSLLTYEGEWRMGHIXXXGTLQFG--REGQNYYTGDFIMNIPFGKGRRQYASGNLYEGMWVNGKRHGYGVFSWSNGNGEYLXXXXXXXXXXXXXXXXYIIRAE-----ESQYALRNYYEGNFLDGRRNGYGTFYYSSGTKYI 165          
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Match: A0A7J8IBE6_MOLMO (Radial spoke head 10-like protein B n=1 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8IBE6_MOLMO)

HSP 1 Score: 68.6 bits (166), Expect = 3.450e-9
Identity = 77/231 (33.33%), Postives = 96/231 (41.56%), Query Frame = 1
Query:  151 FRRGAMDGRGRYIWK----------------------------SNGTIYEGDFSKNELVGIGLXXXNNGCSYEGGVISGLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAXXXXXXXXXXXXXXTYASGNKYEGGWVEDHKNGEGTMTWVHRRERXXXXXXXXXXXXXXXXXXXEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADESRY 759
            F  G M G+G YIW                             S G+ ++GDF KN  +  G     +G +YEG VISG+RNG G+F  +   + Y G W   KRHG G   Y       S +                Y SGN                M W+   E  XXXXXXXXXXXXXXXXX   R       ++Q  + N YRG ++ G R G G F YA  + Y
Sbjct:    2 FSEGLMHGQGTYIWADGVKYEEPRPRSSVRPHADAPTDDMRSWSQGSWHQGDFVKNIPMNRGTYTWPDGSTYEGEVISGMRNGFGVFQCSTQPVSYIGHWCQGKRHGKGSIYYN--REGTSCYEGDWVHNTKKGWGIRRYKSGNIXXXXXXXXXXXXXXXMRWLTTNEEYXXXXXXXXXXXXXXXXXFLKR-----IPNSQYPLRNEYRGNFVNGCRQGYGKFYYASGAIY 225          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6876.14512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5L2J7_9PHAE2.670e-6257.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIY9_ECTSI1.070e-4455.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D0NR05_PHYIT2.550e-2334.67Radial spoke head 10 family protein n=3 Tax=Phytop... [more]
A0A3P3XZ51_PLABS9.700e-1645.12Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A3M7QW85_BRAPC2.460e-1337.25Radial spoke head 10-like protein (Fragment) n=1 T... [more]
A0A7S4QKF5_9DINO9.500e-1138.05Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A3Q4AHB1_MOLML1.100e-936.22Radial spoke head 10 homolog B n=1 Tax=Mola mola T... [more]
A0A3Q3VNT6_MOLML1.160e-936.22Radial spoke head 10 homolog B n=1 Tax=Mola mola T... [more]
A0A821ZQE2_9BILA1.260e-936.65Hypothetical protein n=1 Tax=Rotaria socialis TaxI... [more]
A0A7J8IBE6_MOLMO3.450e-933.33Radial spoke head 10-like protein B n=1 Tax=Moloss... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6876contigH-elongata_contig6876:510..4479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.0
Seed ortholog evalue9.2e-40
Seed eggNOG ortholog2880.D7FIY9
Preferred nameRSPH10B
EggNOG free text desc.regulation of ryanodine-sensitive calcium-release channel activity
EggNOG OGsCOG4642@1,KOG0231@2759
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-07_005070.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons8
Model size996
Cds size996
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6876.14512.1prot_H-elongata_contig6876.14512.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6876 510..4479 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.9596875-CDS-H-elongata_contig6876:509..6321622931081.9596875-CDS-H-elongata_contig6876:509..632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 510..632 -
1691679690.4722748-CDS-H-elongata_contig6876:509..6321691679690.4722748-CDS-H-elongata_contig6876:509..632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 510..632 -
1622931081.9772048-CDS-H-elongata_contig6876:1021..11681622931081.9772048-CDS-H-elongata_contig6876:1021..1168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 1022..1168 -
1691679690.4966414-CDS-H-elongata_contig6876:1021..11681691679690.4966414-CDS-H-elongata_contig6876:1021..1168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 1022..1168 -
1622931081.9935474-CDS-H-elongata_contig6876:1524..16121622931081.9935474-CDS-H-elongata_contig6876:1524..1612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 1525..1612 -
1691679690.513288-CDS-H-elongata_contig6876:1524..16121691679690.513288-CDS-H-elongata_contig6876:1524..1612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 1525..1612 -
1622931082.0096345-CDS-H-elongata_contig6876:1843..19591622931082.0096345-CDS-H-elongata_contig6876:1843..1959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 1844..1959 -
1691679690.5220177-CDS-H-elongata_contig6876:1843..19591691679690.5220177-CDS-H-elongata_contig6876:1843..1959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 1844..1959 -
1622931082.023635-CDS-H-elongata_contig6876:2535..27091622931082.023635-CDS-H-elongata_contig6876:2535..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 2536..2709 -
1691679690.531501-CDS-H-elongata_contig6876:2535..27091691679690.531501-CDS-H-elongata_contig6876:2535..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 2536..2709 -
1622931082.0365427-CDS-H-elongata_contig6876:2919..30401622931082.0365427-CDS-H-elongata_contig6876:2919..3040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 2920..3040 -
1691679690.5446506-CDS-H-elongata_contig6876:2919..30401691679690.5446506-CDS-H-elongata_contig6876:2919..3040Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 2920..3040 -
1622931082.0490649-CDS-H-elongata_contig6876:3688..38201622931082.0490649-CDS-H-elongata_contig6876:3688..3820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 3689..3820 -
1691679690.555614-CDS-H-elongata_contig6876:3688..38201691679690.555614-CDS-H-elongata_contig6876:3688..3820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 3689..3820 -
1622931082.113899-CDS-H-elongata_contig6876:4384..44791622931082.113899-CDS-H-elongata_contig6876:4384..4479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 4385..4479 -
1691679690.5656173-CDS-H-elongata_contig6876:4384..44791691679690.5656173-CDS-H-elongata_contig6876:4384..4479Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6876 4385..4479 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6876.14512.1

>prot_H-elongata_contig6876.14512.1 ID=prot_H-elongata_contig6876.14512.1|Name=mRNA_H-elongata_contig6876.14512.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=332bp
MIVGSGSEYVLGPELGSLIVDEYVGDTDIQGCYSGHGKATFRSGNSYIGE
FRRGAMDGRGRYIWKSNGTIYEGDFSKNELVGIGLYTWNNGCSYEGGVIS
GLRNGEGMFTSADGTLVYEGAWKDSKRHGYGVQRYGVGTSSVSSFAGEWR
GNVRHGHGTMTYASGNKYEGGWVEDHKNGEGTMTWVHRRERYTGEWKEDQ
QCGYGEHVWIEDRPETPLAIDTQKQMCNVYRGQWLAGMRHGQGTFLYADE
SRYVGYWYENKKHGPAVFISANGRTFEGRFKDDFMVGKMCQDEERPELSS
SVKLNISDIVRCGHEVDATAIVREVERSALQV
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mRNA from alignment at H-elongata_contig6876:510..4479-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6876.14512.1 ID=mRNA_H-elongata_contig6876.14512.1|Name=mRNA_H-elongata_contig6876.14512.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3970bp|location=Sequence derived from alignment at H-elongata_contig6876:510..4479- (Himanthalia elongata Himel1 dioecious)
ATGATTGTTGGATCGGGCTCAGAGTACGTGTTGGGCCCGGAGCTTGGGTC GCTTATCGTGGACGAGTACGTGGGCGATACAGACATACAAGGCTGGTGAG GAAACAAACGAGGGCATATACATAGTGGAAATATGACGAAACCCCCCTCC GAGTCTGGAATGGTACACGAGATAGATGATGAGAACACCATCATATAGAT CCGACTTCGTCAACGTTTTTTTAAACAAGCTCATATTTCATAAAATGTAC AAAAATGTAGCGACAGTAACCATAGCTCTACTGCAGTAGCGGTTGTTTAT TCCTCGGTGGTAGATGACCAAATGAATCGCATGGTAGCTCCGGAATTCCG TCATGTAGAAACTTGATAATGGGTGCCTTACCGTCCCTGAACTACTTCAT GTCCTCGACTGAATGTGGATAAATTAATTCCACATGTTGTAAGAAATGAG AAAAATTGAGTGCGAAACACACATAAGAAAGGCATGAATCAATGGCCTCA GCGGGAGTAATAAACACATTGTTCAATCCTTGCGAAGATCAACATGTATG TTGACCTTTATTCAAAGCTCATCGTCTTATGGTTAGCCGTCATCAAGATC TCAAACAATGTGGAACTTTGCCTTGCCTTGCCTTGTGCTTTTCTTGGCTG CGTGGACAGCTACAGCGGACACGGCAAGGCCACCTTTCGGAGCGGTAACT CGTACATCGGCGAGTTCCGGCGTGGTGCCATGGACGGCCGCGGACGATAC ATATGGAAGTCCAACGGAACGATATACGAAGGAGACTTTAGGTGAAGCCC TCGACAATTTATTTGTTCGTTATACTAGGCTGAGCTCTTGACCAATCAGC AGCGTGACTGAGTGGTCTAGGGGTTAAGCCTTTCGAACAGTCAAATATAA GATGCTATTAATAGTTCGAATCCGGTAAATTGTATCATCGAGAGAAACGG GACCACCTACAGATCAGATCTATCGGTGGCGAGGGGTGCGGTCTCAGAAT TATGAACCAGCGTGCAATTGTTTTTCGTTATATTGGGCTAACCCCTAAAA AACCCAGTCGTGTGACTGAGTGATCTAGGGGTTGGCCCTATTGAACATTC ATACTTGCTTAGCTCACCTCCTTCCTCGTGTCCGGTACGCTCCCGGGACT AAATGGATCGATCGTACTGTGAAGTTTATTTCTGGCAGCTCATTGTCCGA TAACGACATCACTCTTTTCCAGCGCGAGCATTGTTATAGTACTGGTTATT GCCACATGACGACTTCTCCTTGAGGTTCTCAGCGTTTTATCGACACACAC ACACAACTCCAAAGCAGCTCAATCCGTTTTATCGACGTTTTCCGTGGGCC TCAAATAATAGCGTAATATGTTAGTTTTGCTTTGGCGCTTCGTGTCTCGG TGTTTGAATCTTCTGCCTACAATCTCCGCATGTCTTCAGCAAGAACGAAT TGGTGGGAATCGGGCTGTACACTTGGAACAACGGATGCTCTTACGAAGGA GGTGTCATTAGCGGCCTCCGGAACGGGGAAGGCATGTTCACCAGCGCAGA TGGCACGCTGGTGCGTCGCTAGAGAAATCAGTAATATCGACAATAATATG ATAACGTCGAGGCTGCTTGTTTCCGACGGGCTCGATTGGCTAAAATCTCG GCGTAAGTGTATGAGTGTATGGATAGAAATCGCAGCTCGAACTCGAGCGC AAACGTACTGCCGTGGATATTGTTATCCCCTCTCCTCCTTGGCTAGACAT AAACTTTCCCATTTTCTAAGGTGTACGAGGGGGCTTGGAAGGATAGCAAG CGGCACGGGTACGGCGTGCAGCGGTACGGCGTAGGAACGAGCAGTGTTTC GTCCTTCGCCGGGGAGTGGCGGGGAAACGTTCGCCACGGCCACGGGACTA TGACCTACGCGTCAGGCAACAAGTACGAGGGTGGCTGGGTTGAGGTATGA TGGGCACCAAAGCTTTATTAATACCGCCGGTCAGTGCGCGGCTGGAGCCT GCTGAAACGCTCGAATCCCTGCTTGGGTGATGGTACTTCCATGCGCTTCC ATGAATCTGCTCGCGTGGGCAAAGGGGTGTGTTTTCGGGCGAACCCGTAA TCGCATTGACGAAGTGTTAGGCAGTTCAGGCAGACGTTCGCACACCAGTT GTCAGTGATTCACGTTTGAGATAAAGCGTTTTCAGAATTTTATGTTATTT ATCTTCCTCTGAACTTCGAAACCCATTGTGATCTAAATCGTAGAATCGCG TCCTATCGTTGACGACGCTTTGAATAGGTTCCTTCCAAGTATGTCTTTGA GCGGCCATAGTAGGTTCTGTACAGCCTCTGTTAAGTCAAGCGAGGAAAGT AATGCAGGCGAAGAGATTTCGTCAGGTCGATGATTCTGCGCTCTGCCTTC GAGGGTAACTGGGTATCTATCCTGGAAACCTTCGCAGCATATACGAATCG GGGAACGAGTTTTCTATATTATTTCACAGTTGAGCGTGCTCTCTACAAGT GCCCTTTTTCTATTTTACAGGACCACAAAAACGGCGAGGGCACCATGACG TGGGTGCATCGGCGTGAGCGTTACACAGGGGAATGGAAAGAAGACCAACA ATGCGGATACGGGGAGCATGTGTGGATAGAGGACAGGTGAGACCAACTCC AGGCTGATCGATTGATGATTATAATGGCTGCTCCGATCAAGCTATCAAGA TATGCCTGTTGAAAGAGGAGGGGAGAAGGACAGCCTGCCCGCCGCTGCAA TACATCAACACCATTCATCTAGTTTCTACACTGTTTACTTGCTCTGAGTC TGACGTCCTACGTTGTTTCTTTCTTTGTTTCTTTCCTTCGTTCGTTCGCG CGCGGAAAACCACTCAGACCCGAAACTCCCTTGGCCATAGACACCCAGAA GCAGATGTGCAACGTGTACAGAGGGCAGTGGCTCGCGGGCATGAGGCACG GACAGGTATGATATAGATCATGCCAAAAATGAGACCCCAGCCTCATCAAA CGTCCAGAGAGCTCGCAACACAAGGGGTTAAAGGAATCACCGAAATTATA TTTAGAGTGAAATACGGTTTCTAGGCTCAGCGTGAAATATTTTCCGTAAA CACGCCGTCTTTCGTCAGACGATGAAAGGGGAAGAAGTTACAATATCCTA TAAGGAAGTACGTAATTGACTTGATGGTTTTGCTAGAGGCAACAAAAAAT ATCCGACAGGGACTGTGAACCCAGTAGCCACGTTTGCACCCCCCCCTGCC CCCCGCGCCGCTCCCTTCCCCCATACACACACAATTTCTACACGTGGTGG ACCCATCGAAGGGCACATTCCTGTATGCGGACGAGTCTCGATACGTGGGC TATTGGTACGAGAACAAGAAGCACGGTCCCGCGGTTTTTATATCAGCAAA CGGCCGCACGTTTGAGGGGAGATTTAAGGACGACTTCATGGTTGGCAAGA TGTGTCAGGTGACAAAACTACCGCACGAAGGAGAGCTCCGCGTGATAGTC TCATCGACGGACACTTGATGCCTTCCGGGAGGTAAACGATCCCGAGAGCA TCGGTATTAACCTTGACCGACCACGGTTCGCTGACCGTTTCCAGGAGAAC CCGAAACCTTGTCGGAGCTTTACACTAATAGCGGCAAGGTCATATTTTCA CCAGGGCGGCGATGTGCGCTGCCAGGCCAAAAGTCTCGCTCTGGGAGTTG GTGCATATTAACCCCCCTCGAAGTCTTCGTATAGATGCAGAGATGCCTTC CTTCTCTGTCGAAATTTTGCGGTGTCATCAACTACTTAATTTACCTTGTG TTCTAGACATGGGCGTCCCCTTCCTCAACTCCCCTCCCCTACACCAGGAC GAGGAGCGTCCCGAGCTGTCTTCGTCTGTAAAACTCAACATCTCCGATAT AGTCCGGTGCGGCCACGAGGTGGATGCTACGGCGATTGTCAGAGAAGTGG AACGCTCAGCACTGCAGGTC
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Coding sequence (CDS) from alignment at H-elongata_contig6876:510..4479-

>mRNA_H-elongata_contig6876.14512.1 ID=mRNA_H-elongata_contig6876.14512.1|Name=mRNA_H-elongata_contig6876.14512.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1992bp|location=Sequence derived from alignment at H-elongata_contig6876:510..4479- (Himanthalia elongata Himel1 dioecious)
ATGATTGTTGGATCGGGCTCAGAGTACGTGTTGGGCCCGGAGCTTGGGTC
GCTTATCGTGGACGAGTACGTGGGCGATACAGACATACAAGGCTGATGAT
TGTTGGATCGGGCTCAGAGTACGTGTTGGGCCCGGAGCTTGGGTCGCTTA
TCGTGGACGAGTACGTGGGCGATACAGACATACAAGGCTGCTACAGCGGA
CACGGCAAGGCCACCTTTCGGAGCGGTAACTCGTACATCGGCGAGTTCCG
GCGTGGTGCCATGGACGGCCGCGGACGATACATATGGAAGTCCAACGGAA
CGATATACGAAGGAGACTTTAGCTACAGCGGACACGGCAAGGCCACCTTT
CGGAGCGGTAACTCGTACATCGGCGAGTTCCGGCGTGGTGCCATGGACGG
CCGCGGACGATACATATGGAAGTCCAACGGAACGATATACGAAGGAGACT
TTAGCAAGAACGAATTGGTGGGAATCGGGCTGTACACTTGGAACAACGGA
TGCTCTTACGAAGGAGGTGTCATTAGCGGCCTCCGGAACGGGGAAGGCAT
GTTCACCAGCGCAGATGGCACGCTGCAAGAACGAATTGGTGGGAATCGGG
CTGTACACTTGGAACAACGGATGCTCTTACGAAGGAGGTGTCATTAGCGG
CCTCCGGAACGGGGAAGGCATGTTCACCAGCGCAGATGGCACGCTGGTGT
ACGAGGGGGCTTGGAAGGATAGCAAGCGGCACGGGTACGGCGTGCAGCGG
TACGGCGTAGGAACGAGCAGTGTTTCGTCCTTCGCCGGGGAGTGGCGGGG
AAACGTTCGCCACGGCCACGGGACTATGACCTACGCGTCAGGCAACAAGT
ACGAGGGTGGCTGGGTTGAGGTGTACGAGGGGGCTTGGAAGGATAGCAAG
CGGCACGGGTACGGCGTGCAGCGGTACGGCGTAGGAACGAGCAGTGTTTC
GTCCTTCGCCGGGGAGTGGCGGGGAAACGTTCGCCACGGCCACGGGACTA
TGACCTACGCGTCAGGCAACAAGTACGAGGGTGGCTGGGTTGAGGACCAC
AAAAACGGCGAGGGCACCATGACGTGGGTGCATCGGCGTGAGCGTTACAC
AGGGGAATGGAAAGAAGACCAACAATGCGGATACGGGGAGCATGTGTGGA
TAGAGGACAGGACCACAAAAACGGCGAGGGCACCATGACGTGGGTGCATC
GGCGTGAGCGTTACACAGGGGAATGGAAAGAAGACCAACAATGCGGATAC
GGGGAGCATGTGTGGATAGAGGACAGACCCGAAACTCCCTTGGCCATAGA
CACCCAGAAGCAGATGTGCAACGTGTACAGAGGGCAGTGGCTCGCGGGCA
TGAGGCACGGACAGACCCGAAACTCCCTTGGCCATAGACACCCAGAAGCA
GATGTGCAACGTGTACAGAGGGCAGTGGCTCGCGGGCATGAGGCACGGAC
AGGGCACATTCCTGTATGCGGACGAGTCTCGATACGTGGGCTATTGGTAC
GAGAACAAGAAGCACGGTCCCGCGGTTTTTATATCAGCAAACGGCCGCAC
GTTTGAGGGGAGATTTAAGGACGACTTCATGGTTGGCAAGATGTGTCAGG
GCACATTCCTGTATGCGGACGAGTCTCGATACGTGGGCTATTGGTACGAG
AACAAGAAGCACGGTCCCGCGGTTTTTATATCAGCAAACGGCCGCACGTT
TGAGGGGAGATTTAAGGACGACTTCATGGTTGGCAAGATGTGTCAGGACG
AGGAGCGTCCCGAGCTGTCTTCGTCTGTAAAACTCAACATCTCCGATATA
GTCCGGTGCGGCCACGAGGTGGATGCTACGGCGATTGTCAGAGAAGTGGA
ACGCTCAGCACTGCAGGTCGACGAGGAGCGTCCCGAGCTGTCTTCGTCTG
TAAAACTCAACATCTCCGATATAGTCCGGTGCGGCCACGAGGTGGATGCT
ACGGCGATTGTCAGAGAAGTGGAACGCTCAGCACTGCAGGTC
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