mRNA_H-elongata_contig68758.14511.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68758.14511.1
Unique NamemRNA_H-elongata_contig68758.14511.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: D7FM82_ECTSI (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM82_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.200e-22
Identity = 40/42 (95.24%), Postives = 41/42 (97.62%), Query Frame = 1 
Query:   13 EMEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 138
            EMEEMLQ+GPAGKEWGGPTRGGVL EPTRFGDWERKGRCSDF
Sbjct:   90 EMEEMLQEGPAGKEWGGPTRGGVLGEPTRFGDWERKGRCSDF 131
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BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A7S1U9V4_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9V4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.570e-19
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    4 EEVEMEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 138
            +E + EEM+ DGPAGKEWGGP RGG L EPTRFGDWERKGRC+DF
Sbjct:   95 DEEDWEEMILDGPAGKEWGGPRRGGKLAEPTRFGDWERKGRCTDF 139
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BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A024U2R8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U2R8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 7.630e-17
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 EEEVEMEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 138
            ++E +ME+M+  GPAG EWGGP RGG  +EPTRFGDWE+KGRC DF
Sbjct:   49 DDEEDMEDMVMIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 94
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BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A6G0WXB9_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WXB9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.580e-16
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 EEEVEMEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 138
            ++E +ME+M+  GPAG EWGGP RGG  +EPTRFGDWE+KGRC DF
Sbjct:   50 DDEEDMEDMVVIGPAGTEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 95
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BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: W4GYH8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GYH8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.970e-16
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 EEEVEMEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 138
            ++E +ME+M+  GPAG EWGGP RGG  +EPTRFGDWE+KGRC DF
Sbjct:   45 DDEEDMEDMVVIGPAGVEWGGPQRGGKYKEPTRFGDWEKKGRCCDF 90
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BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A485L7V1_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L7V1_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.940e-16
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   16 MEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 138
            MEEM+  GPAG EWGGP RGG  +EPTRFGDWE+KGRC DF
Sbjct:   52 MEEMVVIGPAGTEWGGPQRGGKFKEPTRFGDWEKKGRCCDF 92
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BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A225W1X5_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W1X5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.260e-16
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 EEEVEMEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 138
            +E+ + E+M+  GP+G E+GGPTRGG L+EPTRFGDWERKGRCSDF
Sbjct:   51 DEDDDGEDMVAIGPSGVEYGGPTRGGKLKEPTRFGDWERKGRCSDF 96
[Close]
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A6A3LCQ3_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LCQ3_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 5.450e-16
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:   16 MEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 138
            +E+M+  GP+G E+GGPTRGG L+EPTRFGDWERKGRCSDF
Sbjct:   76 VEDMVAIGPSGAEYGGPTRGGKLKEPTRFGDWERKGRCSDF 116
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BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A7S3GRS8_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRS8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.990e-16
Identity = 33/42 (78.57%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:   13 EMEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 138
            EMEEM  +GPAG EW GPTRGG   EPTRFGDWERKGR SDF
Sbjct:   71 EMEEMFIEGPAGLEWNGPTRGGKRPEPTRFGDWERKGRASDF 112
[Close]
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Match: A0A2P4YG81_9STRA (Succinate dehydrogenase assembly factor 4, mitochondrial n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YG81_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 8.630e-16
Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:   19 EEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF 138
            E+M+  GP+G E+GGPTRGG L+EPTRFGDWERKGRCSDF
Sbjct:   54 EDMVAIGPSGVEYGGPTRGGKLKEPTRFGDWERKGRCSDF 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68758.14511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM82_ECTSI1.200e-2295.24Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S1U9V4_9STRA6.570e-1977.78Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A024U2R8_9STRA7.630e-1767.39Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A6G0WXB9_9STRA1.580e-1667.39Succinate dehydrogenase assembly factor 4, mitocho... [more]
W4GYH8_9STRA1.970e-1667.39Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A485L7V1_9STRA2.940e-1675.61Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A225W1X5_9STRA3.260e-1669.57Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A6A3LCQ3_9STRA5.450e-1675.61Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A7S3GRS8_9STRA6.990e-1678.57Succinate dehydrogenase assembly factor 4, mitocho... [more]
A0A2P4YG81_9STRA8.630e-1677.50Succinate dehydrogenase assembly factor 4, mitocho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68758contigH-elongata_contig68758:2991..3131 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue9e-17
Seed eggNOG ortholog2880.D7FM82
EggNOG free text desc.Protein of unknown function (DUF1674)
EggNOG OGs2CZB4@1,2S9G4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size141
Cds size126
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.903054-UTR-H-elongata_contig68758:2990..30051622931081.903054-UTR-H-elongata_contig68758:2990..3005Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68758 2991..3005 +
1691679690.450867-UTR-H-elongata_contig68758:2990..30051691679690.450867-UTR-H-elongata_contig68758:2990..3005Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68758 2991..3005 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.91526-CDS-H-elongata_contig68758:3005..31311622931081.91526-CDS-H-elongata_contig68758:3005..3131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68758 3006..3131 +
1691679690.4620361-CDS-H-elongata_contig68758:3005..31311691679690.4620361-CDS-H-elongata_contig68758:3005..3131Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68758 3006..3131 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68758.14511.1prot_H-elongata_contig68758.14511.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68758 3006..3131 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68758.14511.1

>prot_H-elongata_contig68758.14511.1 ID=prot_H-elongata_contig68758.14511.1|Name=mRNA_H-elongata_contig68758.14511.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MEEMLQDGPAGKEWGGPTRGGVLREPTRFGDWERKGRCSDF*
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mRNA from alignment at H-elongata_contig68758:2991..3131+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68758.14511.1 ID=mRNA_H-elongata_contig68758.14511.1|Name=mRNA_H-elongata_contig68758.14511.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=141bp|location=Sequence derived from alignment at H-elongata_contig68758:2991..3131+ (Himanthalia elongata Himel1 dioecious)
GAAGAGGAGGTCGAAATGGAGGAGATGCTTCAAGATGGCCCGGCGGGCAA
GGAATGGGGCGGCCCCACGCGAGGAGGGGTCCTCCGCGAGCCCACAAGGT
TCGGTGACTGGGAGAGAAAGGGCAGGTGTTCGGACTTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig68758:2991..3131+

>mRNA_H-elongata_contig68758.14511.1 ID=mRNA_H-elongata_contig68758.14511.1|Name=mRNA_H-elongata_contig68758.14511.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig68758:2991..3131+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGAGATGCTTCAAGATGGCCCGGCGGGCAAGGAATGGGGCGGCCC
CACGCGAGGAGGGGTCCTCCGCGAGCCCACAAGGTTCGGTGACTGGGAGA
GAAAGGGCAGGTGTTCGGACTTCTGAATGGAGGAGATGCTTCAAGATGGC
CCGGCGGGCAAGGAATGGGGCGGCCCCACGCGAGGAGGGGTCCTCCGCGA
GCCCACAAGGTTCGGTGACTGGGAGAGAAAGGGCAGGTGTTCGGACTTCT
GA
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