mRNA_H-elongata_contig68683.14503.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68683.14503.1
Unique NamemRNA_H-elongata_contig68683.14503.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68683.14503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68683contigH-elongata_contig68683:664..1011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size348
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.1518788-CDS-H-elongata_contig68683:663..9751622931081.1518788-CDS-H-elongata_contig68683:663..975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68683 664..975 +
1691679690.1748395-CDS-H-elongata_contig68683:663..9751691679690.1748395-CDS-H-elongata_contig68683:663..975Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68683 664..975 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931081.173182-UTR-H-elongata_contig68683:975..10111622931081.173182-UTR-H-elongata_contig68683:975..1011Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68683 976..1011 +
1691679690.188009-UTR-H-elongata_contig68683:975..10111691679690.188009-UTR-H-elongata_contig68683:975..1011Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68683 976..1011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68683.14503.1prot_H-elongata_contig68683.14503.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68683 664..975 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68683.14503.1

>prot_H-elongata_contig68683.14503.1 ID=prot_H-elongata_contig68683.14503.1|Name=mRNA_H-elongata_contig68683.14503.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
STDIVFRIEFPNTVWTNSLIGDSNTVNTGDVRRAAVYSRRVVVPITARQK
PCRAKVIFEKRSGERVMLFSGAGSSTVHEFPSTWHSKILRCQTLFPPCAY
YYF*
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mRNA from alignment at H-elongata_contig68683:664..1011+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68683.14503.1 ID=mRNA_H-elongata_contig68683.14503.1|Name=mRNA_H-elongata_contig68683.14503.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=348bp|location=Sequence derived from alignment at H-elongata_contig68683:664..1011+ (Himanthalia elongata Himel1 dioecious)
TCTACCGATATAGTGTTCCGTATTGAATTCCCCAACACCGTGTGGACCAA
CTCTTTAATTGGAGATTCCAACACCGTAAACACAGGTGATGTGCGCAGGG
CTGCTGTCTACTCCAGACGAGTCGTGGTCCCCATTACGGCACGGCAGAAA
CCGTGTAGGGCAAAAGTCATTTTCGAAAAACGGTCGGGTGAGAGAGTTAT
GTTGTTTTCTGGCGCGGGGTCGTCCACAGTCCACGAGTTCCCTAGTACTT
GGCATTCCAAAATACTTCGGTGCCAAACCCTTTTTCCGCCATGCGCATAC
TATTATTTTTAAACCGTGAACTCATTTCCAACCCTCCGATTATCCACA
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Coding sequence (CDS) from alignment at H-elongata_contig68683:664..1011+

>mRNA_H-elongata_contig68683.14503.1 ID=mRNA_H-elongata_contig68683.14503.1|Name=mRNA_H-elongata_contig68683.14503.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig68683:664..1011+ (Himanthalia elongata Himel1 dioecious)
TCTACCGATATAGTGTTCCGTATTGAATTCCCCAACACCGTGTGGACCAA
CTCTTTAATTGGAGATTCCAACACCGTAAACACAGGTGATGTGCGCAGGG
CTGCTGTCTACTCCAGACGAGTCGTGGTCCCCATTACGGCACGGCAGAAA
CCGTGTAGGGCAAAAGTCATTTTCGAAAAACGGTCGGGTGAGAGAGTTAT
GTTGTTTTCTGGCGCGGGGTCGTCCACAGTCCACGAGTTCCCTAGTACTT
GGCATTCCAAAATACTTCGGTGCCAAACCCTTTTTCCGCCATGCGCATAC
TATTATTTTTAATCTACCGATATAGTGTTCCGTATTGAATTCCCCAACAC
CGTGTGGACCAACTCTTTAATTGGAGATTCCAACACCGTAAACACAGGTG
ATGTGCGCAGGGCTGCTGTCTACTCCAGACGAGTCGTGGTCCCCATTACG
GCACGGCAGAAACCGTGTAGGGCAAAAGTCATTTTCGAAAAACGGTCGGG
TGAGAGAGTTATGTTGTTTTCTGGCGCGGGGTCGTCCACAGTCCACGAGT
TCCCTAGTACTTGGCATTCCAAAATACTTCGGTGCCAAACCCTTTTTCCG
CCATGCGCATACTATTATTTTTAA
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