mRNA_H-elongata_contig101701.145.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig101701.145.1
Unique NamemRNA_H-elongata_contig101701.145.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: D7FJQ9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJQ9_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 4.640e-63
Identity = 95/123 (77.24%), Postives = 110/123 (89.43%), Query Frame = 1
Query:    1 PQNLAKVAASIEARKKKEADIVPEALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGGTYTFVDEGVEEGTWVYRVSDISK 369
            P+NLAKVAASIEARK+KEA+ VPEALGALARDPQQMELSGAGL AKR++D+MVELTW TGNE+GN+GF++SRR  KTD W+EIASY  FPPLNSKGP GG YT+ D+ V+ GTWVYR+SDISK
Sbjct:   97 PENLAKVAASIEARKEKEANTVPEALGALARDPQQMELSGAGLSAKRVSDEMVELTWKTGNEEGNIGFIVSRRAAKTDEWQEIASYKDFPPLNSKGPGGGIYTYADDNVDLGTWVYRISDISK 219          
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A835Z5V8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5V8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.790e-43
Identity = 72/122 (59.02%), Postives = 94/122 (77.05%), Query Frame = 1
Query:    1 PQNLAKVAASIEARKKKEADIVPEALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGGTYTFVDEGVEEGTWVYRVSDIS 366
            P+N+AKV A++EAR+  + + V E++G LARDPQ MELSG GL  K++  + VEL W TG+E GN+GFV+S+R+GKTD W +IASY  + PLNSKG  GG YTFVD   E+GTWVYRVSD++
Sbjct:   93 PENIAKVEAAMEARRLAKLNTVAESVGDLARDPQAMELSGLGLNIKQVNGNDVELEWKTGDEAGNLGFVVSKRRGKTDEWTQIASYKDWAPLNSKGEQGGRYTFVDPDCEQGTWVYRVSDVN 214          
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A6V1RAY1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RAY1_HETAK)

HSP 1 Score: 126 bits (316), Expect = 1.840e-33
Identity = 58/111 (52.25%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   34 EARKKKEADIVPEALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGGTYTFVDEGVEEGTWVYRVSDIS 366
            E R+ ++A     A GAL  DPQ MELSG GLK K + D+  E++W TG+E GN GF+I++R+G +D W+ +ASY  + PLNSKGP+GG YT++D   E+GTW+YRVSD++
Sbjct:  100 EDRRARKAAEKKAAQGALLVDPQAMELSGVGLKTKMVGDEC-EISWGTGDETGNKGFIITKRRGGSDDWQVVASYTDWAPLNSKGPAGGQYTYMDSDTEQGTWIYRVSDVN 209          
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A7S3U5L1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U5L1_9SPIT)

HSP 1 Score: 116 bits (290), Expect = 2.150e-29
Identity = 59/122 (48.36%), Postives = 86/122 (70.49%), Query Frame = 1
Query:    1 PQNLAKVAASIEARKKKEADIVPEALGALARDPQQMEL-SGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGGTYTFVDEGVEE-GTWVYRVSD 360
            P+ +A+  A  +ARK+++     E L  L+ DPQ  EL +G GLK+K I++D VEL W+TGNE+GN GF++ RRKG +D +E++A++  F PL SKG  GG+YT++D+ V   GTWVYR+ D
Sbjct:   95 PEAIARAEAERKARKERQMAAAKE-LDTLSIDPQAAELGAGGGLKSKIISEDEVELKWSTGNEEGNAGFIVQRRKGGSDSFEDLATFENFAPLKSKGVDGGSYTYLDDTVPTPGTWVYRILD 215          
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A7S2ZH05_9RHOD (Hypothetical protein n=3 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZH05_9RHOD)

HSP 1 Score: 114 bits (286), Expect = 9.210e-29
Identity = 54/101 (53.47%), Postives = 75/101 (74.26%), Query Frame = 1
Query:   70 EALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPP-LNSKGPSGGTYTFVDEGVEEGTWVYRVSDISK 369
            +A+G+L  DPQ  EL+G GLK K + D+++ LTW+TG+E+ N GFVI +RKGKTD W +IA +++ P  L SKG  GG Y+++D+  E GTW+YRVSDI K
Sbjct:  132 DAVGSLRTDPQAQELAGVGLKYKSLGDELL-LTWSTGSERSNQGFVIRKRKGKTDEWIKIADFDSHPAELTSKGAQGGDYSWLDKSPEPGTWIYRVSDIDK 231          
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A7S0T6E7_9RHOD (Hypothetical protein n=2 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6E7_9RHOD)

HSP 1 Score: 112 bits (280), Expect = 7.600e-28
Identity = 50/101 (49.50%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   70 EALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPP-LNSKGPSGGTYTFVDEGVEEGTWVYRVSDISK 369
            +A+G +A+DPQQ EL+G+GLK K + D++ ELTW TG+E GNVGF++ +R+GK+D +E +  Y + P    SKGP+GG Y+++    E GTW+YRVSD+++
Sbjct:  135 DAVGKMAKDPQQQELAGSGLKWKLLGDEL-ELTWATGDETGNVGFMLQKRRGKSDKFELVDDYKSLPATFQSKGPAGGVYSYLGPKPEPGTWIYRVSDVAE 234          
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A5J4YVV1_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVV1_PORPP)

HSP 1 Score: 109 bits (273), Expect = 1.020e-26
Identity = 51/101 (50.50%), Postives = 73/101 (72.28%), Query Frame = 1
Query:   70 EALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPP-LNSKGPSGGTYTFVDEGVEEGTWVYRVSDISK 369
            +A G LA DPQ  EL+G GL+AK + D++ EL W TG+E GN GF++SRR+GK + +E +A Y + P    SKGP+GG+Y+++ E  E GTWVYR+SD+ +
Sbjct:  120 DARGRLAGDPQAQELAGTGLRAKFLGDEL-ELAWQTGDETGNTGFILSRRRGKEEEFETVADYKSDPATFKSKGPAGGSYSYLCEKPEAGTWVYRISDVDE 219          
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A1X6P4S7_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4S7_PORUM)

HSP 1 Score: 107 bits (268), Expect = 2.620e-26
Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 1
Query:   70 EALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPP-LNSKGPSGGTYTFVDEG-VEEGTWVYRVSDISK 369
            +A G LA DPQ  EL+G GLK  RI  D V+L W TG E  N+GF + RR GK+D WE +A Y T P  L SKG  GG+YTF+D      GTW+YRVSD+SK
Sbjct:  110 DAKGRLANDPQAGELAGVGLKG-RILGDEVDLRWDTGTEVNNLGFKVMRRAGKSDKWEFVADYQTAPSELQSKGSEGGSYTFIDSSNPPPGTWIYRVSDVSK 210          
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A7S0LGF4_9EUKA (Hypothetical protein n=2 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LGF4_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 5.240e-26
Identity = 50/94 (53.19%), Postives = 66/94 (70.21%), Query Frame = 1
Query:   82 ALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGGTYTFVDEGVEE-GTWVYRVSD 360
            A+  DPQ  EL G GL +K ++++ +EL W+TG E GNVGF++ RR G +D +E IASY     L SKGP+GGTYT++D+ V   GTWVYRV D
Sbjct:  122 AMELDPQAAELGGGGLTSKVLSEEEIELRWSTGGEVGNVGFIVQRRPGGSDNFESIASYEEVGALKSKGPAGGTYTYLDDTVPRVGTWVYRVLD 215          
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Match: A0A1Z5K495_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K495_FISSO)

HSP 1 Score: 104 bits (259), Expect = 5.350e-25
Identity = 55/110 (50.00%), Postives = 70/110 (63.64%), Query Frame = 1
Query:   40 RKKKEADIVPEALGALARDPQQMELSGAGLKAKRIADDMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGGTYTFVDEGVEEGTWVYRVSDISK 369
            RK+KE +   +  G+L RD    ELSG GLK K + D  VEL WTTG E    GF++ RR  KT+ +E +ASY  + PL SKG SGG Y F+D+ VE G WVYRV++  K
Sbjct:  100 RKRKEQET--QVQGSLLRDSAFQELSGTGLKYK-VIDGAVELEWTTGEESNTQGFIVKRRPAKTEKFEVLASYANYGPLQSKGSSGGVYRFLDDQVEPGGWVYRVTEKDK 206          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig101701.145.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FJQ9_ECTSI4.640e-6377.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5V8_9STRA1.790e-4359.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1RAY1_HETAK1.840e-3352.25Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3U5L1_9SPIT2.150e-2948.36Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
A0A7S2ZH05_9RHOD9.210e-2953.47Hypothetical protein n=3 Tax=Rhodosorus marinus Ta... [more]
A0A7S0T6E7_9RHOD7.600e-2849.50Hypothetical protein n=2 Tax=Erythrolobus madagasc... [more]
A0A5J4YVV1_PORPP1.020e-2650.50Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
A0A1X6P4S7_PORUM2.620e-2654.90Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0LGF4_9EUKA5.240e-2653.19Hypothetical protein n=2 Tax=Coccolithus braarudii... [more]
A0A1Z5K495_FISSO5.350e-2550.00Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig101701contigH-elongata_contig101701:226..1511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score202.6
Seed ortholog evalue1.1e-49
Seed eggNOG ortholog2880.D7FJQ9
EggNOG OGs2CYRZ@1,2S61B@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_010550.1
Exons3
Model size372
Cds size372
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig101701.145.1prot_H-elongata_contig101701.145.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig101701 226..1511 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929556.4230394-CDS-H-elongata_contig101701:225..3101622929556.4230394-CDS-H-elongata_contig101701:225..310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101701 226..310 -
1691679068.734715-CDS-H-elongata_contig101701:225..3101691679068.734715-CDS-H-elongata_contig101701:225..310Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101701 226..310 -
1622929556.4404128-CDS-H-elongata_contig101701:832..10141622929556.4404128-CDS-H-elongata_contig101701:832..1014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101701 833..1014 -
1691679068.7460237-CDS-H-elongata_contig101701:832..10141691679068.7460237-CDS-H-elongata_contig101701:832..1014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101701 833..1014 -
1622929556.461206-CDS-H-elongata_contig101701:1406..15111622929556.461206-CDS-H-elongata_contig101701:1406..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101701 1407..1511 -
1691679068.7570071-CDS-H-elongata_contig101701:1406..15111691679068.7570071-CDS-H-elongata_contig101701:1406..1511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig101701 1407..1511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig101701.145.1

>prot_H-elongata_contig101701.145.1 ID=prot_H-elongata_contig101701.145.1|Name=mRNA_H-elongata_contig101701.145.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp
PQNLAKVAASIEARKKKEADIVPEALGALARDPQQMELSGAGLKAKRIAD
DMVELTWTTGNEKGNVGFVISRRKGKTDGWEEIASYNTFPPLNSKGPSGG
TYTFVDEGVEEGTWVYRVSDISK*
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mRNA from alignment at H-elongata_contig101701:226..1511-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig101701.145.1 ID=mRNA_H-elongata_contig101701.145.1|Name=mRNA_H-elongata_contig101701.145.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1286bp|location=Sequence derived from alignment at H-elongata_contig101701:226..1511- (Himanthalia elongata Himel1 dioecious)
CCTCAGAACCTTGCGAAGGTGGCGGCCTCGATCGAAGCCCGCAAGAAGAA GGAAGCAGATATTGTCCCCGAAGCGCTTGGCGCGCTCGCGCGCGATCCCC AGCAGGTAGGGGTGCGCCCGGAGGCCTGACCTGTTTCTCTAGACTCGACA CGCTGAAAACGCGGGGGTTGTTTGTGCTGGTTGGTGCCGTATCTTGTTTG AGTGTTTGTCTCCCTCTTCCCCCGTTGCTTTCCCGAACCCATCGCGCCCA TCACGCAGAAACACGCGCGCTTGTAAGTATTCACGAAAATATACGCAATA ACGGTGCCGAACTTGTCCAGGACGCGGAGAAGCTCGGCAACGCTCGTTTC TCTGCGAGCTGGGGCTGCGGCAGTAACCACTACGCGTGCGAACATCGTCC AATCTTGTGACTTTTAATACCTTGTTTTCCGCCTCTCGCCGCCGCCGCCG CCTCTTGTCTGTATCTGCTGCGGACCCCCCTCACTCCCTCGACGCAGATG GAACTCTCCGGAGCAGGCTTGAAGGCCAAGAGAATCGCGGACGACATGGT GGAGCTGACCTGGACAACCGGGAACGAGAAGGGCAACGTGGGGTTCGTGA TCAGCAGAAGGAAGGGCAAGACGGACGGCTGGGAAGAAATCGCCTCGTAC AACACCTTCCCGCCTCTCAATTCCAAGGGGTGAGCAACGGTATTACGAAG CTTTATTGTACCATATGAGTAGATGGGCCTTTTCCTAAACGTCTTGAATA TTTTTCTCCCCAGACATGAATGTCTATAGTACAGTATTCCGGTAGGTGGA TGTCACGCGGCTAGAAATAGCAGCAAAGGTAGATGTCGCACGGGTCCCTC TCTTATAACAGATCTATTAATAGAAGGAAATGTTTTAAGCAGAACATCTT CATATAGTTGACTGAGTTATAGTTATATTATAGCTAGTATGGAGTGTTTT AAACAGAACATCTTCATATATTTGACTGAGTTATACTAGAGCTAGTATGG AGTGTTTTAAACGAAGCAGAGCCAGAAAGACCGACTGCAACGTTGCGATG GACTGCTAGTCGCGATGGGCAGCCAAACCAATCGGCGAAGAAGACACAAC GTTGAGCCCGTGCCGTGGGAAGGGGAGAATGAGGGCAACACCTCTCCGTA TTGTCGGTATCGTCCGTGCCGTCGGTATCGTTGATGTGTGTTTCTGTACA GTCCGTCGGGGGGCACGTACACCTTCGTGGACGAAGGCGTGGAGGAGGGG ACCTGGGTATATCGCGTATCTGACATCAGCAAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig101701:226..1511-

>mRNA_H-elongata_contig101701.145.1 ID=mRNA_H-elongata_contig101701.145.1|Name=mRNA_H-elongata_contig101701.145.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig101701:226..1511- (Himanthalia elongata Himel1 dioecious)
CCTCAGAACCTTGCGAAGGTGGCGGCCTCGATCGAAGCCCGCAAGAAGAA
GGAAGCAGATATTGTCCCCGAAGCGCTTGGCGCGCTCGCGCGCGATCCCC
AGCAGCCTCAGAACCTTGCGAAGGTGGCGGCCTCGATCGAAGCCCGCAAG
AAGAAGGAAGCAGATATTGTCCCCGAAGCGCTTGGCGCGCTCGCGCGCGA
TCCCCAGCAGATGGAACTCTCCGGAGCAGGCTTGAAGGCCAAGAGAATCG
CGGACGACATGGTGGAGCTGACCTGGACAACCGGGAACGAGAAGGGCAAC
GTGGGGTTCGTGATCAGCAGAAGGAAGGGCAAGACGGACGGCTGGGAAGA
AATCGCCTCGTACAACACCTTCCCGCCTCTCAATTCCAAGGGATGGAACT
CTCCGGAGCAGGCTTGAAGGCCAAGAGAATCGCGGACGACATGGTGGAGC
TGACCTGGACAACCGGGAACGAGAAGGGCAACGTGGGGTTCGTGATCAGC
AGAAGGAAGGGCAAGACGGACGGCTGGGAAGAAATCGCCTCGTACAACAC
CTTCCCGCCTCTCAATTCCAAGGGTCCGTCGGGGGGCACGTACACCTTCG
TGGACGAAGGCGTGGAGGAGGGGACCTGGGTATATCGCGTATCTGACATC
AGCAAGTGATCCGTCGGGGGGCACGTACACCTTCGTGGACGAAGGCGTGG
AGGAGGGGACCTGGGTATATCGCGTATCTGACATCAGCAAGTGA
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