mRNA_H-elongata_contig68639.14499.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68639.14499.1
Unique NamemRNA_H-elongata_contig68639.14499.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68639.14499.1 vs. uniprot
Match: A0A6H5KIE0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 2.290e-15
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 1
Query:   31 HMNAVIGLVILMGIQNLPEMKLHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKSKARR--GDE-----DYDILHQIRR--SILNKQWGTICDPGRWIFVDEKMVKNKGRFCAGVQRHMP 372
            H+  ++G+ I MG+     M+ HW      D+  VRECM+RD F L+YCRF H +  +   R  G++     ++D    IR    ILN  W    D  +W+  DE+MVK    F   + RH P
Sbjct:  193 HIYGMLGITITMGLTKKTHMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSP 315          
BLAST of mRNA_H-elongata_contig68639.14499.1 vs. uniprot
Match: A0A6H5KNV0_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 4.830e-15
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 1
Query:   31 HMNAVIGLVILMGIQNLPEMKLHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKSKARR--GDE-----DYDILHQIRR--SILNKQWGTICDPGRWIFVDEKMVKNKGRFCAGVQRHMP 372
            H+  ++G+ I MG+     M+ HW      D+  VRECM+RD F L+YCRF H +  +   R  G++     ++D    IR    ILN  W    D  +W+  DE+MVK    F   + RH P
Sbjct:  484 HIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSP 606          
BLAST of mRNA_H-elongata_contig68639.14499.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 5.040e-15
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 1
Query:   31 HMNAVIGLVILMGIQNLPEMKLHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKSKARR--GDE-----DYDILHQIRR--SILNKQWGTICDPGRWIFVDEKMVKNKGRFCAGVQRHMP 372
            H+  ++G+ I MG+     M+ HW      D+  VRECM+RD F L+YCRF H +  +   R  G++     ++D    IR    ILN  W    D  +W+  DE+MVK    F   + RH P
Sbjct:  700 HIYGMLGITITMGLTKKTRMRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPRWAGEDKTPNPEFDSKWHIRELEDILNNAWTENMDFNQWLCYDEQMVKTVSTFAHYLMRHSP 822          
BLAST of mRNA_H-elongata_contig68639.14499.1 vs. uniprot
Match: A0A6P3Y7S4_DINQU (piggyBac transposable element-derived protein 4-like n=1 Tax=Dinoponera quadriceps TaxID=609295 RepID=A0A6P3Y7S4_DINQU)

HSP 1 Score: 78.6 bits (192), Expect = 2.190e-14
Identity = 42/129 (32.56%), Postives = 71/129 (55.04%), Query Frame = 1
Query:    1 AWSDDGITLTHMNAVIGLVILMGIQNLPEMKLHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKSKARRGDEDYDILHQIRRSILNKQWGTICDPGRWIFVDEKMVKNKGRFCAGVQRHMPGQAHQ 387
            AW    +T   MN  IG++++MG+  LPE++L+W   +MY    ++  M RD FL I  +F H +  + AR  D  Y I + +   +    + +   PG+ I +DE MV  +GR   G ++++PG+ H+
Sbjct:  134 AWQS--VTRDEMNTFIGILLIMGVVRLPEIRLYWSNSDMYANARIKNAMKRDRFLSIL-KFLHFSDNTTARTEDRLYKIRNIVEAIV--DTFKSAIKPGKNIVIDESMVPWRGRL--GFRQYIPGKRHK 255          
BLAST of mRNA_H-elongata_contig68639.14499.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 4.160e-14
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1
Query:    1 AWSDDGITLTHMNAVIGLVILMGIQNLPEMKLHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKSKARR-----GDEDYDILHQIRRSI 261
            +W   GIT + M  VI +++ +G+  LP M  HW     +D++ VR C+ RD FLLIY RFFHMAS     R      +  +D LH IR  +
Sbjct:  544 SWPKKGITKSMMQGVISIILTIGLVQLPAMHDHWSCHSFHDYKLVRACLPRDMFLLIYGRFFHMASSGAPERLQGGTTEPGWDSLHHIRYEL 635          
BLAST of mRNA_H-elongata_contig68639.14499.1 vs. uniprot
Match: A0A6H5K2B4_9PHAE (DDE_Tnp_1_7 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B4_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.710e-14
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = 1
Query:   31 HMNAVIGLVILMGIQNLPEMKLHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKS-------KARRGDEDYDILHQIRR--SILNKQWGTICDPGRWIFVDEKMVKNKGRFCAGVQRHMP 372
            H+  ++G+ I MG      ++ HW      D+  VRECM+RD F L+YCRF H +  +       + +  + ++D    IR    ILN  W    D  +W+  DE+MVK    F   + RH P
Sbjct:  545 HIYGMLGITITMGFTKKTRIRKHWSRSLHDDYPLVRECMSRDLFELLYCRFIHCSDGNAPPHWTGEDKTPNPEFDSKWHIRELEDILNNAWTDNMDFNQWLSYDEQMVKTVSTFANYLMRHSP 667          
BLAST of mRNA_H-elongata_contig68639.14499.1 vs. uniprot
Match: T0MM39_9MICR (Piggybac-derived 2 (Agap012114-pa) n=1 Tax=Nosema apis BRL 01 TaxID=1037528 RepID=T0MM39_9MICR)

HSP 1 Score: 76.6 bits (187), Expect = 1.030e-13
Identity = 44/129 (34.11%), Postives = 75/129 (58.14%), Query Frame = 1
Query:    1 AWSDDGITLTHMNAVIGLVILMGIQNLPEMKLHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKSKARRGDEDYDILHQIRRSILNKQWGTICDPGRWIFVDEKMVKNKGRFCAGVQRHMPGQAHQ 387
            AW    +T   +N  IG++++MG+  LPE++L+W  ++MY    +++ M RD FL I  +F H A  + AR  D  Y I + I  +I++    +I  PG+ I +DE MV  +GR     ++++PG+ H+
Sbjct:  132 AWQS--VTKDEVNTFIGILLIMGVVQLPEIRLYWSNKDMYANARIKKAMKRDRFLSIL-KFLHFADNTTARTEDRLYKIRN-IFETIVDSFKSSI-RPGKDIVIDESMVPWRGRL--RFRQYIPGKRHK 253          
BLAST of mRNA_H-elongata_contig68639.14499.1 vs. uniprot
Match: UPI00083DE618 (piggyBac transposable element-derived protein 4-like n=1 Tax=Habropoda laboriosa TaxID=597456 RepID=UPI00083DE618)

HSP 1 Score: 74.3 bits (181), Expect = 1.990e-13
Identity = 41/129 (31.78%), Postives = 69/129 (53.49%), Query Frame = 1
Query:    1 AWSDDGITLTHMNAVIGLVILMGIQNLPEMKLHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKSKARRGDEDYDILHQIRRSILNKQWGTICDPGRWIFVDEKMVKNKGRFCAGVQRHMPGQAHQ 387
            AW    +T   MN   G++++MG+  LPE++L+W   +MY    ++  M RD FL I  +F H +  + AR  D  Y I + I   +    + +   PG+ I +DE MV  + R   G ++++PG+ H+
Sbjct:  133 AWQS--VTRDEMNTFFGILLIMGVVQLPEIRLYWSNNDMYANARIKNAMRRDRFLSIL-KFLHFSENTTARTEDRLYKIQNIIEAIV--DTFKSSVKPGKNIVIDESMVPWRRRL--GFRQYIPGKRHK 254          
BLAST of mRNA_H-elongata_contig68639.14499.1 vs. uniprot
Match: UPI00073D3432 (piggyBac transposable element-derived protein 4-like n=1 Tax=Polistes dominula TaxID=743375 RepID=UPI00073D3432)

HSP 1 Score: 75.1 bits (183), Expect = 3.550e-13
Identity = 41/131 (31.30%), Postives = 73/131 (55.73%), Query Frame = 1
Query:    1 AWSDDGITLTHMNAVIGLVILMGIQNLPEMKLHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKSKARRGDEDYDILHQIRRSI--LNKQWGTICDPGRWIFVDEKMVKNKGRFCAGVQRHMPGQAHQ 387
            AW    +T   +N  IG++++MG+  LPE++L+W  ++MY    ++  M RD FL  + +F H +  + AR  D     LH+IR  +  +   + +   PG+ I +DE MV  +GR   G+++H+  + H+
Sbjct:  133 AWQS--VTRDEVNTFIGILLIMGVVQLPEIRLYWSNKDMYTNARIKNAMKRDRFLS-FLKFLHFSDNTTARTEDR----LHKIRNIVEAIVDTFKSSIKPGKNIVIDESMVTWRGRL--GLRQHILDKRHK 254          
BLAST of mRNA_H-elongata_contig68639.14499.1 vs. uniprot
Match: UPI000678A1B3 (piggyBac transposable element-derived protein 4-like n=3 Tax=Papilio xuthus TaxID=66420 RepID=UPI000678A1B3)

HSP 1 Score: 73.2 bits (178), Expect = 1.690e-12
Identity = 40/130 (30.77%), Postives = 73/130 (56.15%), Query Frame = 1
Query:    4 WSDDGITLTHMNAVIGLVILMGIQNLPEMKLHWDTREMYDFRNVRECMTRDFFLLIYCRFFHMASKSKARRGDEDYDILHQIRR--SILNKQWGTICDPGRWIFVDEKMVKNKGRFCAGVQRHMPGQAHQ 387
            W+D  +T   +    G++I+MGI  LPE++L+W    +Y+ R ++  M RD FL I  ++ H A+  +  + D     L +IR+   +L + + T   PG+ I +DE M+  +GR     ++++PG+ H+
Sbjct:  154 WND--VTGNEIRNFFGILIIMGINRLPEIRLYWSKNPLYENRLIKSTMKRDRFLFIL-KYLHFANNEEVPKDDR----LKKIRKILDLLIESYATTLRPGKEIVIDESMLPWRGRLI--FRQYIPGKRHK 274          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68639.14499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIE0_9PHAE2.290e-1534.96DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KNV0_9PHAE4.830e-1534.96DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JW40_9PHAE5.040e-1534.96HTH La-type RNA-binding domain-containing protein ... [more]
A0A6P3Y7S4_DINQU2.190e-1432.56piggyBac transposable element-derived protein 4-li... [more]
A0A6H5L3T1_9PHAE4.160e-1440.22DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5K2B4_9PHAE5.710e-1432.52DDE_Tnp_1_7 domain-containing protein (Fragment) n... [more]
T0MM39_9MICR1.030e-1334.11Piggybac-derived 2 (Agap012114-pa) n=1 Tax=Nosema ... [more]
UPI00083DE6181.990e-1331.78piggyBac transposable element-derived protein 4-li... [more]
UPI00073D34323.550e-1331.30piggyBac transposable element-derived protein 4-li... [more]
UPI000678A1B31.690e-1230.77piggyBac transposable element-derived protein 4-li... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68639contigH-elongata_contig68639:2163..2800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.9
Seed ortholog evalue2e-09
Seed eggNOG ortholog42254.XP_004606025.1
EggNOG free text desc.piggyBac transposable
EggNOG OGs28PUT@1,2QWHD@2759,38EA4@33154,3BMU4@33208,3CZSB@33213,48G9Q@7711,49KX8@7742
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931080.713927-CDS-H-elongata_contig68639:2162..24171622931080.713927-CDS-H-elongata_contig68639:2162..2417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68639 2163..2417 +
1691679689.9940848-CDS-H-elongata_contig68639:2162..24171691679689.9940848-CDS-H-elongata_contig68639:2162..2417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68639 2163..2417 +
1622931080.7272086-CDS-H-elongata_contig68639:2659..28001622931080.7272086-CDS-H-elongata_contig68639:2659..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68639 2660..2800 +
1691679690.0036645-CDS-H-elongata_contig68639:2659..28001691679690.0036645-CDS-H-elongata_contig68639:2659..2800Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68639 2660..2800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68639.14499.1prot_H-elongata_contig68639.14499.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68639 2163..2800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68639.14499.1

>prot_H-elongata_contig68639.14499.1 ID=prot_H-elongata_contig68639.14499.1|Name=mRNA_H-elongata_contig68639.14499.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=132bp
AWSDDGITLTHMNAVIGLVILMGIQNLPEMKLHWDTREMYDFRNVRECMT
RDFFLLIYCRFFHMASKSKARRGDEDYDILHQIRRSILNKQWGTICDPGR
WIFVDEKMVKNKGRFCAGVQRHMPGQAHQTR*
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mRNA from alignment at H-elongata_contig68639:2163..2800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68639.14499.1 ID=mRNA_H-elongata_contig68639.14499.1|Name=mRNA_H-elongata_contig68639.14499.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=638bp|location=Sequence derived from alignment at H-elongata_contig68639:2163..2800+ (Himanthalia elongata Himel1 dioecious)
GCGTGGTCCGATGACGGCATAACTCTGACTCACATGAACGCCGTGATCGG GCTGGTAATACTGATGGGAATCCAGAACCTTCCTGAGATGAAGCTTCATT GGGATACGCGTGAGATGTATGACTTTCGGAACGTCCGAGAGTGTATGACG CGCGACTTCTTCCTACTAATATATTGTCGATTTTTCCACATGGCCTCGAA AAGCAAAGCGAGACGTGGCGACGAGGACTACGACATATTACACCAAATAA GGCGAGTATCGACAGAAATGATTGGGTGGTGATGCAATCTCTACGTTCGT CGACAGGCCCTTGATGGTGACCACATAGGCGCTTCCGCATGTCCATCACA TTTTTTCCATAATGAATACCTGGTAAATTTAAATTAATTTTATCGTGTTT TTTTTTTACGAACGAATGCTTTTGAGTTCAAGCACTGTGTACAACTTTTT TTATCATCACCCTGGCTGACTTGTGCCTTTCTTCAATCGTGTTAGAGTCT ATCCTGAACAAGCAATGGGGCACGATCTGCGATCCGGGAAGATGGATATT TGTTGACGAGAAAATGGTCAAGAACAAGGGGCGTTTTTGCGCGGGTGTAC AGCGTCATATGCCCGGGCAAGCCCATCAAACACGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig68639:2163..2800+

>mRNA_H-elongata_contig68639.14499.1 ID=mRNA_H-elongata_contig68639.14499.1|Name=mRNA_H-elongata_contig68639.14499.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=792bp|location=Sequence derived from alignment at H-elongata_contig68639:2163..2800+ (Himanthalia elongata Himel1 dioecious)
GCGTGGTCCGATGACGGCATAACTCTGACTCACATGAACGCCGTGATCGG
GCTGGTAATACTGATGGGAATCCAGAACCTTCCTGAGATGAAGCTTCATT
GGGATACGCGTGAGATGTATGACTTTCGGAACGTCCGAGAGTGTATGACG
CGCGACTTCTTCCTACTAATATATTGTCGATTTTTCCACATGGCCTCGAA
AAGCAAAGCGAGACGTGGCGACGAGGACTACGACATATTACACCAAATAA
GGCGAGCGTGGTCCGATGACGGCATAACTCTGACTCACATGAACGCCGTG
ATCGGGCTGGTAATACTGATGGGAATCCAGAACCTTCCTGAGATGAAGCT
TCATTGGGATACGCGTGAGATGTATGACTTTCGGAACGTCCGAGAGTGTA
TGACGCGCGACTTCTTCCTACTAATATATTGTCGATTTTTCCACATGGCC
TCGAAAAGCAAAGCGAGACGTGGCGACGAGGACTACGACATATTACACCA
AATAAGGCGATCTATCCTGAACAAGCAATGGGGCACGATCTGCGATCCGG
GAAGATGGATATTTGTTGACGAGAAAATGGTCAAGAACAAGGGGCGTTTT
TGCGCGGGTGTACAGCGTCATATGCCCGGGCAAGCCCATCAAACACGGTG
ATCTATCCTGAACAAGCAATGGGGCACGATCTGCGATCCGGGAAGATGGA
TATTTGTTGACGAGAAAATGGTCAAGAACAAGGGGCGTTTTTGCGCGGGT
GTACAGCGTCATATGCCCGGGCAAGCCCATCAAACACGGTGA
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