mRNA_H-elongata_contig6857.14496.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6857.14496.1
Unique NamemRNA_H-elongata_contig6857.14496.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6857.14496.1 vs. uniprot
Match: D8LMA8_ECTSI (Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA8_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.570e-6
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 2 
Query:   44 GLSGEARGVTMAPRPRVLLVLPLGCLEKTTIGFRLQ 151
            G + +    + APRPRVL+VLPL CLE+TTIGFRLQ
Sbjct: 1482 GFAKDGTQFSAAPRPRVLMVLPLACLERTTIGFRLQ 1517
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BLAST of mRNA_H-elongata_contig6857.14496.1 vs. uniprot
Match: A0A6H5K372_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K372_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 1.570e-6
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 2 
Query:   44 GLSGEARGVTMAPRPRVLLVLPLGCLEKTTIGFRLQ 151
            G + +    + APRPRVL+VLPL CLE+TTIGFRLQ
Sbjct: 1435 GFAKDGTQFSAAPRPRVLMVLPLACLERTTIGFRLQ 1470
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6857.14496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMA8_ECTSI1.570e-663.89Nischarin/ IRAS/ imidazoline receptor n=1 Tax=Ecto... [more]
A0A6H5K372_9PHAE1.570e-663.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6857contigH-elongata_contig6857:850..5629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size156
Cds size153
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931080.5021563-CDS-H-elongata_contig6857:849..9251622931080.5021563-CDS-H-elongata_contig6857:849..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6857 850..925 +
1691679689.893131-CDS-H-elongata_contig6857:849..9251691679689.893131-CDS-H-elongata_contig6857:849..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6857 850..925 +
1622931080.5178547-CDS-H-elongata_contig6857:5550..56271622931080.5178547-CDS-H-elongata_contig6857:5550..5627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6857 5551..5627 +
1691679689.9033434-CDS-H-elongata_contig6857:5550..56271691679689.9033434-CDS-H-elongata_contig6857:5550..5627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6857 5551..5627 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6857.14496.1prot_H-elongata_contig6857.14496.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6857 850..5627 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6857.14496.1

>prot_H-elongata_contig6857.14496.1 ID=prot_H-elongata_contig6857.14496.1|Name=mRNA_H-elongata_contig6857.14496.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
RLDSRWGGPGGSAARAVGRGAWRYHGAATQGAAGSTPGMPGEDHNRIPPP
E
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mRNA from alignment at H-elongata_contig6857:850..5629+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6857.14496.1 ID=mRNA_H-elongata_contig6857.14496.1|Name=mRNA_H-elongata_contig6857.14496.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4780bp|location=Sequence derived from alignment at H-elongata_contig6857:850..5629+ (Himanthalia elongata Himel1 dioecious)
AGACTTGATAGCCGCTGGGGTGGCCCGGGTGGTTCGGCTGCGCGGGCTGT
CGGGAGAGGCGCGTGGCGTTACCATGGCGAGTGCCCCCAGGAAATACACT
CCCACAAAACTAGCTCCGTACTATCAATCATTACTAATTACCGTATTGTT
TAACATTATATGCACCGTGTTTTTACATGTATAAGGGGGGGGGGAAGGTT
TAGCACATCCCCTTTTTTAAGAAGCAAATGAACTCACTGAAACCCTCCGA
ACATCCACACCTCCACTGGACCACAAGCGGGAAAGTGAAGGGGACCGACT
AATTATCGTCGGGCTCGAGTGCCTCTTCTTATTTCCTCTCCTTTTAGCTG
ACCAGCAAGAGTACAGCGGGATCGGTCACCAGCTATGAGCACAAAATATT
CACAAGAAAATATTTTCACATTACGGGCATCACTAGGAAGTATAATAGTA
ATAGTAGTGGTTCAAGGTATAATCGAAAATTTACTACGTATAGGCACTAG
AGTACTTGGTAATTCAAGATTCGATTAATAATTCAAAATTTGTGGAAGAA
GATGGGGTTTATTTTTTAAGTATTGCCATAGATAGTACAAGCAAGTATTT
GTCGAGAAAGCGTGGGGGAAGGGGGAAGGAGAGAGGGGGTTATGTATTTC
GTCCCCGGGTTTCCATTTTAAAACATATGAGGTCATTCACACCCTCCGAA
TATCCACGCGCCTTCTTAGCACCGTGAGAGGTGCAGTCACGGGGACCAAC
TATATCGTCAGATTCGAACGTGTACATTCCCCTCGCTGCCTCGGCAAGGT
CTACTCTGTCATGACCCATAGCGGGTGGGGGGGATCTTTCTAGCGGAGTA
AGGCTGGATTCACCTTCGAGGAGAGATTTATTGTTGTTGCTGCATGCCTG
GCCGCAAGACTCGCGTGTATTGGTAGAGTTGGGTCGCATTCGGTGCGTCA
GGTGCAAATGAGGAGACTCGCGAGCCTTTTGACTCTGCGGTATAGTATAG
CAATATACATCTGATCTACTCATTTGTGCGCGGAGGCAGGCGCCAACGAA
GGCTGCAAGACGGCGTATGGCTCTAGGTTTTCGTGGAGGGAGCTACATTA
TGTCTAGAGGCCGGGATTCGCCGCCACAGGAGGAGGAAGACGGGCTGCGA
CGAGCTGGTCGGGAATTGATTGCAACCTTTCCAGCGCGATATATATATAT
ATTTAAGACCAGAACCTTGAGTGCAGCGAGGGAGAAAGCGAGGAACTGCC
TGGGAAGGAGCAGTTACCAGGGCGTGCGTGAACGGAGCGGGTCGAGAATG
GTGGTGAAGGACGACATCACCCTCGAGACGGGCACACCATGGATGGCTCG
AGAAAGGACTTAGTGATTGTTGACTCTGGTGGCTTTTGTTGGCTGTTCCT
TTTTTCAGAGCGTGTCCAATGGTCGTTATTTTTGACAGCACTTCAGACAG
TAGCTGTTCTTATTCATTTCCCACGACTACCGTGTTTTGGTACGGTGCGG
GCAGCACTCCAGACAGCAACTCTGCTGTAGTCAACAACCATTTATGTGGT
TGGTTGTGGGAACGGGAGGGGAGCGTGATGCTGTAGTCGAATGGGTATAC
CGTGGATGGATGTGTTTTTCAGGTTGAACACACACCAAATTATTAGTAGG
AAATTAGGTGTATATCTTTCGGTCTTGTGTGCCCCTTTCCCTTTTCTACT
TTTCGGGGGTGGTTTTTTGTACTTTTACTTTCCTAGGCTCCAGCACTTCC
GTGACCACGGGCTCTAGATTTTTAGAAAAGAGCTTATGTGAGGATTCAAT
TCTAAAAAAAAAGTACTCCTTTCGAGCACAAAATCTTCACATGAGGTTAA
TTGTGTTCCCCAATAGTAAGCTCATTGGGTCAACGATATAATGTTCTACG
ATAGGCCCGCGTCCCGACAGCCACACGGAGTTCGTTAAAAACTGCGTTTT
TTTTGTTGTCTTTCTTTTTCATTGAAGATTTCGCTTTTTCCGAGTATTAG
TATTAGTATTATTTATCGACCCTTGAAGTCATGTAATTCCAACCCTCCGA
ACACCCACGCCTTGTTAGCACCATCCAAAGGGGACCAACTATCGTTAAGG
TGTTCGAATGTGTACAATACTACCTCTGAGCACAAAATCTTCACACATGA
TAAATCGCGTTCCCCAATAAACAGTATGTTCGTGAGACTAGAAACAGATT
ATGAGATGAGGAATGGGGAAAATTTTGAACTAAGCGTGTTTCTTCAATGT
TCGTGAGATTTAAAACGGATCATAAAATAAGAGATGGGAATTTTTGTATT
CCTTATCTCATAATCCGTTCCTAGTCTCACGAACATACTGTTAATAGTAA
GTTCGTCGGGTCATGCATCATATGGGGACTATGACACCAAACCAAAGCCT
AGACAGTGAATTAGTTATGATTCGGAAGGGTTAAGCTGCCCCGTTGCCGT
TTCCTTTTACATTGGAGAGTACCTTGAACGTTTTTCCCTTCCGGATGGTG
TATTTTTTCTACCTTGTGACCACAGGTTGGATTTTGGATGGGATTATTTT
CTATAGAGATAAGGTCCCGGAGAATTGTTGATATCGATGTATCTAATTAT
TATACTGTAATTTTAAGAAGAGGGGGGGGGGGGGGGGGTAGTAAGAGGAA
CAATATATTAACTCATTCAAAACCCTCCGAACATCCGCGCCAGACGTAAT
ACGCTAATTGCTCATAAAGTATTTAAGTTAGGGTTCTACTATTATTATTA
AAATATTGAAGTCAGTTTAGCGCGAATTTCGTTGAAGGCACCATATGTTT
ATATAATATATATATATATATATTATAGTATATACCGATTAATTTTGGGT
TATGACTGTTGGAGTTTTGGGGGGACTAGAATATATAGGATCTAAACTAT
AGATACACTACGAAGGTGCTACAAAGGTGGTGGTAAACTGACACATCGGA
GAGCGGTCGAAGAAAGGTGAGGTCGCCAGTGTAAGTTTTTACGAAAATTA
TAAACAATGCTAGTCGTCGTTAGAGTAGATTTATTTTTGTCGTATTCTTT
TGCGTGCCTTGTGCAGGTCCACTGGCTCCTCTCCGCAAACAGAGGTCGAT
GTCATCGACGTGTATGGAGGCGTTATGATTATAATCCCCCCTCTTTCCCT
ACCCCCCCCCCCCACACACACACACTTCGCCCTTCCCCTCCTCCTCGAAT
TTGATGTATCCGTTATCTCGTTTGCATTTTATTTTATTTTGTGTCATGTG
TTGCGTTTGTTGGTCCAGGGGGAAGTGGCGTGCTTGGTGGTTGCCACGGA
AAGGCTCCTGTTCGTGATGGACGGGGCGTTCGCAAAGAAAGAGGCGCTGT
TTTCGGAGGTGAGGGGGGAAGAGAAACGTCCAATACATCCAAAAGCCTTC
ACGGGTGCAAGCCCCAGAGTGGGGAGAAAAAATGATTGCGCCGCAGACGA
GGCGGGAGCGAAGCGAGGGGAAGACGACGTTTTTATTATTATTACTATTA
CTATTTATTACAATCATTATTATTATTATTATTATTATTATGTTATTATT
ATGATGTTATTATTATGATGTTATTATTATGATGTTATTATTATGATGTT
ATTATTACTATGTTATTATTATTATTATTATGTTATTATTATTATTATGT
TATTATTATGATGTTATTATTATTATGTTATTATTATTATGTTATTATTA
TTGTTATTTTTTTATGTTATTGTTATTATGTTATTATTATTATGTTATTA
TTATTATGTTATCATTATTATGTTATATTATTATTATGTTATTATTATTA
TGTTATTATTGCTACTGTTATTATTGATATTGTTATTGTTATTGTTATTG
TTATTTTTTTATAGTGGCGAGAAAAGTAGGCAAAGTGATTTTCGCGTTGT
TTTGATGTCGTTTCTGTTTCTAGTATATTATAGTTGTTGGCACGTTTTAG
GTTAATAATCTATCATTGCCCGGGTGATTCTATTAGGGTAGCTCTTAAAG
TAGTGACCACTCCTTAGTGGTGCGGGGGATCACGTCTTCGGGTTCTGCAA
GGATTGCCTATTTTGTTTGTTTCTTAGCGAAAAACGGGAGGACACTATCA
ATAGTGCTGAATTACTTGCAGGCAGTAGGCGTTAACTGGGAGGGGAAGGG
GGGGAGATGGGTTGATCCCTTGAGGCCACAGGCAGTAGGCGTTAACTGGG
AGGGGAAAGGGGGGGTTATCTCTTGGAGCCACAGGCAGTAGGGATGATGG
GCAACGTTGCAATAGAGGTGATTGGTAACGTAGTACGTTAAATTGAATGG
CCCCACCCATCGCAAGAAAAGTGATTTTAAAAAATAAAATAAAAAATAGC
TGCAGTAAGTTTTTATTAGAAAACCTTAAACTCATTCCAACCCTCCGAAC
ATCCACGCCTTCTTAGCGCCGTGAGAGGTACCATCCAGGGGTTACATTTT
TTTTGTCTCATTTTTTAAGGGCTTCAAACACGTTTTTGGCGGAAATATCG
TATGAGACATTTCCTAGTGGTTGTGTAGTACCTGTTGACTCTGTCGCTCG
CTAGAGGCGTGTCGCCGACGTCTTCTACTGAGTCCTCGAAGCGTTCGTTG
AAACGTTTGTCCAACCGATTTTTGAAACGTCGTTTGAACTTAATCGTCGA
ACCGTTATTTTTCCAGCCGAATCGTTGAACCGGTCCGTTCGCTCGTCGCA
GGCGCCGCGACCCAGGGTGCTGCTGGTTCTACCCCTGGGATGCCTGGAGA
AGACCACAATAGGATTCCGCCTCCAGAAGC
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Coding sequence (CDS) from alignment at H-elongata_contig6857:850..5629+

>mRNA_H-elongata_contig6857.14496.1 ID=mRNA_H-elongata_contig6857.14496.1|Name=mRNA_H-elongata_contig6857.14496.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig6857:850..5629+ (Himanthalia elongata Himel1 dioecious)
AGACTTGATAGCCGCTGGGGTGGCCCGGGTGGTTCGGCTGCGCGGGCTGT
CGGGAGAGGCGCGTGGCGTTACCATGAGACTTGATAGCCGCTGGGGTGGC
CCGGGTGGTTCGGCTGCGCGGGCTGTCGGGAGAGGCGCGTGGCGTTACCA
TGGCGCCGCGACCCAGGGTGCTGCTGGTTCTACCCCTGGGATGCCTGGAG
AAGACCACAATAGGATTCCGCCTCCAGAAGCGCCGCGACCCAGGGTGCTG
CTGGTTCTACCCCTGGGATGCCTGGAGAAGACCACAATAGGATTCCGCCT
CCAGAA
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