mRNA_H-elongata_contig68563.14494.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68563.14494.1
Unique NamemRNA_H-elongata_contig68563.14494.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68563.14494.1 vs. uniprot
Match: A0A6H5LAU8_9PHAE (CXXC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAU8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 7.670e-7
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   25 GLDQELLMTIIEKIKHGREGDNLYRGLGKGWRKYCTAAKKAVRKKNEAPPRR-----ARRGRP 198
            GLDQE+L  II+K+K G +G NLY+GLG    +YCTAAK AVR+  +A PR      A RGRP
Sbjct:  199 GLDQEVLEEIIQKMKAGHKGQNLYKGLGHV--RYCTAAKLAVRR--DAVPRAPVVAPAARGRP 257
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68563.14494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LAU8_9PHAE7.670e-755.56CXXC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68563contigH-elongata_contig68563:411..1166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size310
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931080.353263-CDS-H-elongata_contig68563:412..6071622931080.353263-CDS-H-elongata_contig68563:412..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68563 413..607 -
1691679689.8252604-CDS-H-elongata_contig68563:412..6071691679689.8252604-CDS-H-elongata_contig68563:412..607Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68563 413..607 -
1622931080.367541-CDS-H-elongata_contig68563:1055..11661622931080.367541-CDS-H-elongata_contig68563:1055..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68563 1056..1166 -
1691679689.837774-CDS-H-elongata_contig68563:1055..11661691679689.837774-CDS-H-elongata_contig68563:1055..1166Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68563 1056..1166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68563.14494.1prot_H-elongata_contig68563.14494.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68563 413..1166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68563.14494.1

>prot_H-elongata_contig68563.14494.1 ID=prot_H-elongata_contig68563.14494.1|Name=mRNA_H-elongata_contig68563.14494.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
ALQARRADGLDQELLMTIIEKIKHGREGDNLYRGLGKGWRKYCTAAKKAV
RKKNEAPPRRARRGRPLGSVGKKRKQELQLQEEHPPEQHQEEQLERLEQR
QQ
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mRNA from alignment at H-elongata_contig68563:411..1166-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68563.14494.1 ID=mRNA_H-elongata_contig68563.14494.1|Name=mRNA_H-elongata_contig68563.14494.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=756bp|location=Sequence derived from alignment at H-elongata_contig68563:411..1166- (Himanthalia elongata Himel1 dioecious)
GCACTCCAAGCGAGGCGGGCTGATGGACTGGACCAGGAGTTGCTGATGAC
TATCATCGAGAAAATAAAGCACGGCCGCGAGGGAGATAACCTCTACAGGG
GCCTTGGAAAAGTGAGGCGTGGCGGGGTTGCGCTGTAGTAACTTCGTACG
TATAGTTATTGTGTCCGTTTGATGATGCACATATTCAATACATTGTTCCA
GGGTGTAACTTATTCTTGCTTGAGAGAACGACTAAGGGTGCATGAACCCG
ACCACTGCATGACTTGCGAGATGTATAGCAGAGAGAGTTATATGCCAAGA
GCATAAAGGCTAGAGCAGTATGAATTCGTGACGATGTGCGACCCAATCCA
CGTTGGACGTTTGCTGAACTTCACGGCCGCGTCCTTTCCCGAAAAATGCG
CGGGGCGCAGCCGCACCGTAAAAACACAACAAACTGAATAATATACTGGC
ATCGGAAGGGAAGAGAGGAAGGAGGAGGGGGGGGGACTCTTCTCCAGTAG
AAAGTGTAATATTCTATGCGGATTTTTTTTTTCCTATAACGCCTCCTCGT
GTTTTTCAGGGGTGGCGGAAGTACTGCACCGCCGCGAAGAAGGCCGTTCG
GAAGAAAAATGAAGCTCCCCCTCGCCGCGCCAGGCGGGGCAGACCTCTGG
GGAGCGTAGGCAAAAAGCGCAAGCAAGAGTTACAGCTTCAGGAAGAACAT
CCGCCAGAACAACACCAAGAAGAGCAACTGGAGCGGCTGGAGCAGCGGCA
GCAACC
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Coding sequence (CDS) from alignment at H-elongata_contig68563:411..1166-

>mRNA_H-elongata_contig68563.14494.1 ID=mRNA_H-elongata_contig68563.14494.1|Name=mRNA_H-elongata_contig68563.14494.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig68563:411..1166- (Himanthalia elongata Himel1 dioecious)
GCACTCCAAGCGAGGCGGGCTGATGGACTGGACCAGGAGTTGCTGATGAC
TATCATCGAGAAAATAAAGCACGGCCGCGAGGGAGATAACCTCTACAGGG
GCCTTGGAAAAGCACTCCAAGCGAGGCGGGCTGATGGACTGGACCAGGAG
TTGCTGATGACTATCATCGAGAAAATAAAGCACGGCCGCGAGGGAGATAA
CCTCTACAGGGGCCTTGGAAAAGGGTGGCGGAAGTACTGCACCGCCGCGA
AGAAGGCCGTTCGGAAGAAAAATGAAGCTCCCCCTCGCCGCGCCAGGCGG
GGCAGACCTCTGGGGAGCGTAGGCAAAAAGCGCAAGCAAGAGTTACAGCT
TCAGGAAGAACATCCGCCAGAACAACACCAAGAAGAGCAACTGGAGCGGC
TGGAGCAGCGGCAGCAAGGGTGGCGGAAGTACTGCACCGCCGCGAAGAAG
GCCGTTCGGAAGAAAAATGAAGCTCCCCCTCGCCGCGCCAGGCGGGGCAG
ACCTCTGGGGAGCGTAGGCAAAAAGCGCAAGCAAGAGTTACAGCTTCAGG
AAGAACATCCGCCAGAACAACACCAAGAAGAGCAACTGGAGCGGCTGGAG
CAGCGGCAGCAA
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