mRNA_H-elongata_contig68546.14491.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68546.14491.1
Unique NamemRNA_H-elongata_contig68546.14491.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68546.14491.1 vs. uniprot
Match: D8LC20_ECTSI (Thaumatin-domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC20_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 1.400e-80
Identity = 116/189 (61.38%), Postives = 134/189 (70.90%), Query Frame = 1
Query:  292 DSECQELGAQE----VCGVYEERTEGGSSLTGSLLPNVCGRLVGWAGAHTACGSITKEGGTFPNDFPYDCALMARHGTFAQLYRCEGGVYSSHACYSMDAEDSCCGCPPWDDENGYCVSTNPDWLLTAYPWAQFFKSVCPTAYSFPRDDLSSMFSCSDAQSQEGTGEDSKNTQSYRIRFCPGSSEDQFY 846
            D +CQ+  +++     CG+YEER+ GG+SLTGS +P VCG+ VGW GA T+CG+  K+G TFP  FPY+C L  RHGT  QL RC G  YS+ ACY + AEDSCCGCPPWD ENG CVSTNPDW   A PWA FFKS CPTAYSFPRDD +SMF CSD  +        KNTQSY IRFCPG SE  FY
Sbjct:  302 DGDCQDSASEKEGYAFCGIYEERSNGGASLTGSAIPGVCGKPVGWIGAQTSCGTTAKDGETFPGGFPYNCDLATRHGTIKQLVRCSGSTYSTQACYLVGAEDSCCGCPPWDIENGGCVSTNPDWTNAALPWANFFKSACPTAYSFPRDDRTSMFVCSDEATDNAATIAGKNTQSYLIRFCPGDSEQSFY 490          
BLAST of mRNA_H-elongata_contig68546.14491.1 vs. uniprot
Match: A0A6H5K2P7_9PHAE (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2P7_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 4.290e-45
Identity = 101/277 (36.46%), Postives = 140/277 (50.54%), Query Frame = 1
Query:   70 DGANIPMEIQPIDPVSKKSGNF------CGTPGY-TQVSGELAACNWSF---APDAVEGFAQDLSPYTRVVWPRDEENTTPCTNDSECQELGAQEVCGVYEERTEGGSSLTGSLLPNVCGRLVGWAGAHTACGSITKEGGTFPNDFPYDCALMARHGTFAQLYRCEGGVYSSHACYSMDAEDSCCGCPPWDDEN--------GYCVSTNPDWLLTAYPWAQFFKSVCPTAYSFPRDDLSSMFSCSDAQSQEGTGEDSKNTQSYRIRFCPGSSEDQFY 846
            DG N+PM I+P +PV   S         CG+PG       ++  C WS+    PD + G ++DLS + R+V P D ENTT CT+D EC       +CGV+ +R   GS   G +    CG  + W  A  AC    ++G TFP+  P+ C      G  + +Y C G   + H+ Y+  A+ + CGCP W+D            C   NP+W+  + PW    K  CPTAY+FP DD +S F+C D     G G  + NTQSY I FCPG +E   +
Sbjct:  335 DGTNLPMMIEPDNPVFPNSTEQNIMKYQCGSPGAPVSHHSKIDGCTWSYETTVPD-LHG-SEDLSQFLRLVLPEDYENTTLCTSDWEC----TTGICGVHPQRWADGS-YKGGVEQGSCGEHIAWVTAGGACAGGWEDG-TFPDAHPFFCGSEVSGGMRSHMYGCYGTTLA-HSGYTPGADTTACGCPEWEDPPYNLMAPPISDCTGINPEWVELSMPWHAHQKRACPTAYTFPYDDQTSTFTCFD-----GDGPGNPNTQSYTITFCPGDTEKNMF 597          
BLAST of mRNA_H-elongata_contig68546.14491.1 vs. uniprot
Match: L8GSW0_ACACA (Thaumatin domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GSW0_ACACA)

HSP 1 Score: 114 bits (286), Expect = 8.470e-26
Identity = 79/262 (30.15%), Postives = 110/262 (41.98%), Query Frame = 1
Query:   70 DGANIPMEIQPIDPVSKKSGNFCGTPGYTQVSGELAACNWSFAPDAVEGFAQDLSPYTRVVWPRDEENTTPCTNDSECQELGAQEVCGVYEERTEGGSSLTGSLLPNVCGRLVGWAGAHTACGSITKEGGTFPNDFPYDCALMARHGTFAQLYRCEGGVYSSHACYSMDAEDSCCGCPPWDDEN-------GYCVSTNPDWLLTAYPWAQFFKSVCPTAYSFPRDDLSSMFSCSDAQSQEGTGEDSKNTQSYRIRFCPGSSE 834
            +G NIP+ I P+         FCG PG  +      +C+W  +P           P    VW    ++   C++D EC      EVCG           L+  L  N CG+ +G+  A   CG  +  G       P+DCA  +R      LY C  G+ S   CY   A  +CCGC  W D           C + NP W+    P   + K  CPT+Y++P DD+SS F+CS     E  G    N   Y + FCP + +
Sbjct:  172 NGINIPLAINPLTSARTNDPFFCGNPGALRPRTPTGSCSWDLSP-----------PSPHYVWVT--QDGRGCSSDRECS---GGEVCG-----------LSTPLTLN-CGKRLGYWTADQVCGMNSNYGA------PFDCAQYSR------LYGCTNGIDS---CYQPFATSTCCGCANWQDLGVPVPSSVTRCHAINPTWVKNVQPKLLWMKKACPTSYTYPYDDMSSTFTCS-----EMVG--GLNRVDYEVVFCPPAGD 383          
BLAST of mRNA_H-elongata_contig68546.14491.1 vs. uniprot
Match: A0A8H7FZC7_9AGAM (Glutaredoxin domain-containing protein n=2 Tax=Athelia sp. TMB TaxID=2748771 RepID=A0A8H7FZC7_9AGAM)

HSP 1 Score: 106 bits (265), Expect = 1.840e-22
Identity = 77/240 (32.08%), Postives = 107/240 (44.58%), Query Frame = 1
Query:   73 GANIPMEIQPIDPVSKKSGNF-CGTPGYTQVSGELAACNWSFAPDAVEGFAQDLSPYTRVVWPRDEENTTPCTNDSECQELGAQEVCGVYEERTEGGSSLTGSLLPNVCGRLVGWAGAHTACGSITKEGGTFPNDFPYDCALMARHGTF----AQLYRCEGGVYSSHACYSMDAEDSCCGCPPWDD---------ENGYCVSTNPDWLLTAYPWAQFFKSVCPTAYSFPRDDLSSMFSCS 750
            G ++P  I P  P    S  + CG PG +  S  L A +W     +VE   Q ++P +           T C+ DS+C   G+ E CG+    + G  +L       VCG L G+  A + CG     G T+ N     CA    +G +    +  Y C     +S +CY   A+ +CCGC  W D             CV+TNP W     P  QF K+ CP  Y+FP DD+SS F+CS
Sbjct:  152 GVSVPFSITPESPNLDSSNPYTCGNPGSSSPSAGLGAASWKVTVPSVE--YQWVTPSSATP--------TTCSADSDC---GSGENCGLVY--SSGAFNL-------VCGALSGYWTAGSVCG--INGGTTYMN-----CASALTNGPYTGTDSAFYGCGD---TSGSCYQPGADTACCGCVNWQDVLASGAVPSSTELCVNTNPTWTSIVQPTIQFLKTGCPNCYTFPYDDMSSTFTCS 359          
BLAST of mRNA_H-elongata_contig68546.14491.1 vs. uniprot
Match: A0A078B3L6_STYLE (Uncharacterized protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B3L6_STYLE)

HSP 1 Score: 100 bits (249), Expect = 1.380e-20
Identity = 79/271 (29.15%), Postives = 115/271 (42.44%), Query Frame = 1
Query:   70 DGANIPMEIQPIDPVSKKSGNFCGTPGYTQVSGELAACNWSFAPDAVEGFAQDLSPYTRVVWPRDEENTTPCTNDSECQELGAQEVCGVYEERTEGGSSLTGSLLPNVCGRLVGWAGAHTACGSITKEGGTFPNDFPYDCA--LMARHGTFAQ--LYRCEGGVYSSHACYSMDAEDSCCGCPPWDDEN----GY-----CVSTNPDWLLTAYPWAQFFKSVCPTAYSFPRDDLSSMFSCSDAQSQEGTGEDSKNTQSYRIRFCPGSSEDQF 843
            +G ++P+   P + V+ +S   CGTPG    +  + +C+W   P +        + Y  V           C  DS+CQ  G +  CG+              L+   CG  +G+  A   CG I   G       P++C   L A +  F    +Y C G      +CY   A DSCCGC  WD+E      Y     CV+ N  W        ++ K  CPTAY++P DD+SS F+C   Q   G    S N   Y++ FCP + +  F
Sbjct:  168 NGIHLPVSFGPTN-VAGQSAYKCGTPGAKHPNTNVGSCSWDLQPPS--------NDYNWVT-----AGGNHCNADSDCQ--GTK--CGLSFNPGHA------DLIQKTCGNHLGYWTADQVCGVIPSFGA------PFNCQDRLPAPYSGFNNWNMYLCVG----IGSCYQPGASDSCCGCVNWDEEGVDVPSYPYTEKCVNKNSAWNDRMKNTLKWMKKACPTAYTYPYDDISSTFTC---QHMNG----SVNIVDYQVTFCPQNEQSVF 397          
BLAST of mRNA_H-elongata_contig68546.14491.1 vs. uniprot
Match: J9IX81_9SPIT (Thaumatin domain-containing protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9IX81_9SPIT)

HSP 1 Score: 99.4 bits (246), Expect = 3.720e-20
Identity = 77/268 (28.73%), Postives = 111/268 (41.42%), Query Frame = 1
Query:   70 DGANIPMEIQPIDPVSKKSGNFCGTPGYTQVSGELAACNWSFAPDAVEGFAQDLSPYTRVVWPRDEENTTPCTNDSECQELGAQEVCGVYEERTEGGSSLTGSLLPNVCGRLVGWAGAHTACGSITKEGGTFPNDFPYDCA--LMARHG--TFAQLYRCEGGVYSSHACYSMDAEDSCCGCPPWDDEN---------GYCVSTNPDWLLTAYPWAQFFKSVCPTAYSFPRDDLSSMFSCSDAQSQEGTGEDSKNTQSYRIRFCPGSSE 834
            +G ++P+   P + V  +S   CGTPG    +  +  C+W+  P  VE        Y  V           C+ND +C   G Q+ CG+              LL   CGR +G+  A   CG I   G       P++C   L + +   T   LY C G      +CY   A   CCGC  WD+E            C + NP W        ++ K  CPTAY++P DD+SS F+C + Q          +   Y+I FCP + +
Sbjct:  169 NGIHLPISFGPTN-VGPQSAYKCGTPGAKFPTTHVGGCDWNLQPPNVE--------YNFVT-----AGGNQCSNDGQC---GGQK-CGLSFNPGHA------DLLQRTCGRHLGYWSADQVCGLIPNFGA------PFNCQDRLPSPNDGLTNWNLYACVG----VGSCYQPGASQGCCGCVNWDEEGVNVPSFPETDRCKNQNPIWHDRVKDTLKWMKKACPTAYTYPYDDISSTFTCQNIQG-------GISQVDYQITFCPQNEQ 395          
BLAST of mRNA_H-elongata_contig68546.14491.1 vs. uniprot
Match: A0A7S1MTE4_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1MTE4_NEODS)

HSP 1 Score: 95.9 bits (237), Expect = 2.030e-19
Identity = 69/267 (25.84%), Postives = 107/267 (40.07%), Query Frame = 1
Query:   70 DGANIPMEIQPIDPVSKKSGN-------FCGTPGYTQVSGELAACNWSFAPDAVEGFAQDLSPYTRVVWPRDEENTTPCTNDSECQELGAQEVCGVYEERTEGGSSLTGSLLPNVCGRLVGWAGAHTACG-SITKEGGTFPNDFPYDCALMARHGTFAQLYRCEGGVYSSHACYSMDAEDSCCGCPPWDD----ENGYCVSTNPDWLLTAYPWAQFFKSVCPTAYSFPRDDLSSMFSC-SDAQSQEGTGEDSKNTQSYRIRFCPGSS 831
            +GAN P+ + P+ P    + +        C  PG      +    +W F   A     + L P          E  T C +D++C      +VCG       G   L   +  ++CG L+G       CG +     GT  +       +    G   QL++C      S  C+  +  ++CCGC  WDD        C + NP W   A P  +  K  CPT Y++P DD +S+F+C S+A         + N  SY + +CP  +
Sbjct:   57 NGANFPLSVTPMSPTGTFAPDPHTPDAYHCRAPGSPFAVQDTPGASWHFQQGAAMT-NRSLLPMVSYT-----EGATTCESDADCS---GGDVCGTAMATLAGKKPLN-FVHSSICGALLGVWSRDELCGWTDAIHFGTCKDQITAPITMQV--GNVEQLFQCNPPFGQS--CFQKNVNEACCGCSVWDDFIPVHTANCTTFNPLWATIAKPHIEVLKRACPTCYTYPYDDATSLFTCWSNA---------THNENSYMVEWCPSGT 300          
BLAST of mRNA_H-elongata_contig68546.14491.1 vs. uniprot
Match: A0A2E5DSG6_9PROT (Thaumatin domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E5DSG6_9PROT)

HSP 1 Score: 90.1 bits (222), Expect = 6.910e-17
Identity = 79/279 (28.32%), Postives = 110/279 (39.43%), Query Frame = 1
Query:   58 RQHYD-----GANIPMEIQPIDPVSKKSGNF-CGTPGYTQVSGELAACNWSFAPDAVEGFAQDLSPYTRVVWPRD--EENTTPCTNDSECQELGAQEVCGVYEERTEGGSSLTGSLLPNVCGRLVGWAGAHTACGSITKEGGTF--PNDFPYDCALMARHGTFAQLYRCEGGVYSS---HACYSMDAEDSCCGCPPWDD-------ENGYCVST-NPDWLLTAYPWAQFFKSVCPTAYSFPRDDLSSMFSCSDAQSQEGTGEDSKNTQSYRIRFCPGSS 831
            R  YD     G ++P+++ P +P +    +F CGTPG    S     CNW+ A           SP     W      E TT CT            +CG+  +            L  VCG   G+  A  AC     +   +    +F  +    +     + LY C     S    ++CY  DA D CCGC  WD            C +T N +W     P  Q+ K+ CP+ Y++P DD SS F CSD      T   + N+  Y I FCPG +
Sbjct:  146 RDFYDVEVINGFHMPIQVTPNNPFNVPGDDFNCGTPGNPAGSPGYGLCNWNNAIPP--------SPKHAYYWVSSGGPECTTTCTGGK---------LCGLDNK------------LNRVCGDFQGFWSADQACAVNANKAQEYFQCKNFLTNPPYPSNTYQLSALYGCVTPSASESILNSCYIFDAPD-CCGCANWDQFGITIPASTLACKNTSNLNWTQQVQPKIQWMKATCPSYYTYPYDDASSSFRCSD------TAAGNSNSVGYTITFCPGGN 388          
BLAST of mRNA_H-elongata_contig68546.14491.1 vs. uniprot
Match: A0A098G403_9GAMM (Thaumatin domain-containing protein n=1 Tax=Legionella fallonii LLAP-10 TaxID=1212491 RepID=A0A098G403_9GAMM)

HSP 1 Score: 76.3 bits (186), Expect = 6.990e-12
Identity = 72/287 (25.09%), Postives = 112/287 (39.02%), Query Frame = 1
Query:   70 DGANIPMEIQPI--DPVSKKSGNF-CGTPGYTQ---VSGELAACNWSFAPDAVEGFAQDLSPYTRVVWPRDEENTTPCTNDSECQELGAQEVCGVYEERTEGGSSLTGSLLPNVCGRLVGWAGAHTACGSITKEGGTFPNDFPYDCALMARHGTFAQLYR---CE----------GGVYSSHACYSMDAEDSCCGCPPW--DDENG-----------YCVS-TNPDWLLTAYPWAQFFKSVCPTAYSFPRDDLSSMFSCSDAQSQEGTGEDSKNTQSYRIRFCPGSS 831
            +G +IP+ + P+    +   + N+ CG PG       +    +CNW  A          + P T+  +       + C  ++   +  A ++CG+             S     CG  +G+  A   C S +    T  N F    AL     T A LY    C              Y S+  Y+ +   +CCGC  W    E G            C+S T+P W     P  Q+ K+ CP+AY++P DD +S FSC++    +       N+  Y I FC G+S
Sbjct:  514 NGFHIPISMAPMYYSGIPATANNYTCGIPGGYNGGVTTNGFGSCNWDNA----------IPPSTKNGYYWVTGGGSSCNINTTTTQCPAGQLCGLN------------SSFNQTCGNFLGYWSADQVC-SQSNLSSTVSNYFLCKQALPGNFPTGATLYSLMACSVPTGSTNPTYNSCYLSYPNYTAEQIQTCCGCVDWWNSSETGGVAIGANSTAASCMSQTDPQWNQYVQPMIQWMKATCPSAYTYPFDDKTSGFSCTNNLPSQ------PNSTGYLITFCEGNS 771          
BLAST of mRNA_H-elongata_contig68546.14491.1 vs. uniprot
Match: A0A0A2T7V2_9GAMM (Thaumatin domain-containing protein n=2 Tax=Legionella norrlandica TaxID=1498499 RepID=A0A0A2T7V2_9GAMM)

HSP 1 Score: 75.5 bits (184), Expect = 1.270e-11
Identity = 75/300 (25.00%), Postives = 106/300 (35.33%), Query Frame = 1
Query:   70 DGANIPMEIQPI------DPVSKKSGNF-CGTPGYTQVSGELAACNWSFAPDAVEGFAQDLSPYTRVVWPRDEENTTPCT-NDSECQELGAQEVCGVYEERTEGGSSLTGSLLPNVCGRLVGWAGAHTACGSITKEGGTFP----------NDFPY--------DCALMA--RHGTFAQLYRCEGGVYSSHACYSMDAEDSCCGCPPW-------------DDENGYCVS-------TNPDWLLTAYPWAQFFKSVCPTAYSFPRDDLSSMFSCSDAQSQEGTGEDSKNTQSYRIRFCPG 825
            +G +IP+ +QP+        +   + N+ CG PG   +     ACNW+ A     GF           W     NT   T  +S C    A  +CG+     +            VCG  +G+  A   CGS                   N  PY        D  L A  +  T  +   C    Y+ +  YS      CCGC  W             +   G C         TN  W     P  Q+ K  CP+AY++P DD +S FSC++    +       N+  Y + FCPG
Sbjct:  514 NGFHIPISMQPVYYQDSTTTIYATADNYNCGVPGKETIGNGFGACNWNNATVPGNGF----------YWVTGGGNTCSITATNSGCS---ATTLCGLDNNFNQ------------VCGNFLGYWSADQVCGSNNVPAAVLEYFKCNQPLPTNTTPYYPSGAVLSDLMLCAVPKGYTGPRYNTC----YNPYPSYSSTEIAQCCGCVDWWNPDQTNNVAIGANSNTGSCTQPGHSQPQTNAQWNQYVQPMLQWMKQACPSAYTYPFDDKTSGFSCTNNLPGQ------PNSAGYIVTFCPG 778          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68546.14491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LC20_ECTSI1.400e-8061.38Thaumatin-domain containing protein n=1 Tax=Ectoca... [more]
A0A6H5K2P7_9PHAE4.290e-4536.46WSC domain-containing protein n=2 Tax=Ectocarpus T... [more]
L8GSW0_ACACA8.470e-2630.15Thaumatin domain containing protein n=1 Tax=Acanth... [more]
A0A8H7FZC7_9AGAM1.840e-2232.08Glutaredoxin domain-containing protein n=2 Tax=Ath... [more]
A0A078B3L6_STYLE1.380e-2029.15Uncharacterized protein n=1 Tax=Stylonychia lemnae... [more]
J9IX81_9SPIT3.720e-2028.73Thaumatin domain-containing protein n=1 Tax=Oxytri... [more]
A0A7S1MTE4_NEODS2.030e-1925.84Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A2E5DSG6_9PROT6.910e-1728.32Thaumatin domain-containing protein (Fragment) n=1... [more]
A0A098G403_9GAMM6.990e-1225.09Thaumatin domain-containing protein n=1 Tax=Legion... [more]
A0A0A2T7V2_9GAMM1.270e-1125.00Thaumatin domain-containing protein n=2 Tax=Legion... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68546contigH-elongata_contig68546:422..3266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score88.2
Seed ortholog evalue6.7e-15
Seed eggNOG ortholog658187.LDG_8849
EggNOG free text desc.Thaumatin family
EggNOG OGs1JGPB@118969,1P3U7@1224,1SSQM@1236,2DX7U@1,343S2@2
COG Functional cat.S
Best tax levelLegionellales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGalactose-binding domain-like and thaumatin domain protein
Ec32 orthologEc-20_004120.1
Exons7
Model size854
Cds size852
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931079.902644-CDS-H-elongata_contig68546:421..4711622931079.902644-CDS-H-elongata_contig68546:421..471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 422..471 -
1691679689.6350453-CDS-H-elongata_contig68546:421..4711691679689.6350453-CDS-H-elongata_contig68546:421..471Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 422..471 -
1622931079.9215157-CDS-H-elongata_contig68546:627..8471622931079.9215157-CDS-H-elongata_contig68546:627..847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 628..847 -
1691679689.6470137-CDS-H-elongata_contig68546:627..8471691679689.6470137-CDS-H-elongata_contig68546:627..847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 628..847 -
1622931079.9440491-CDS-H-elongata_contig68546:1420..14801622931079.9440491-CDS-H-elongata_contig68546:1420..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 1421..1480 -
1691679689.6562674-CDS-H-elongata_contig68546:1420..14801691679689.6562674-CDS-H-elongata_contig68546:1420..1480Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 1421..1480 -
1622931079.9591382-CDS-H-elongata_contig68546:1864..20901622931079.9591382-CDS-H-elongata_contig68546:1864..2090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 1865..2090 -
1691679689.6662986-CDS-H-elongata_contig68546:1864..20901691679689.6662986-CDS-H-elongata_contig68546:1864..2090Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 1865..2090 -
1622931079.974843-CDS-H-elongata_contig68546:2404..25311622931079.974843-CDS-H-elongata_contig68546:2404..2531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 2405..2531 -
1691679689.6771417-CDS-H-elongata_contig68546:2404..25311691679689.6771417-CDS-H-elongata_contig68546:2404..2531Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 2405..2531 -
1622931079.9941049-CDS-H-elongata_contig68546:2828..29231622931079.9941049-CDS-H-elongata_contig68546:2828..2923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 2829..2923 -
1691679689.6881523-CDS-H-elongata_contig68546:2828..29231691679689.6881523-CDS-H-elongata_contig68546:2828..2923Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 2829..2923 -
1622931080.0068378-CDS-H-elongata_contig68546:3192..32661622931080.0068378-CDS-H-elongata_contig68546:3192..3266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 3193..3266 -
1691679689.697892-CDS-H-elongata_contig68546:3192..32661691679689.697892-CDS-H-elongata_contig68546:3192..3266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68546 3193..3266 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68546.14491.1prot_H-elongata_contig68546.14491.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68546 422..3266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68546.14491.1

>prot_H-elongata_contig68546.14491.1 ID=prot_H-elongata_contig68546.14491.1|Name=mRNA_H-elongata_contig68546.14491.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=284bp
RGLHQSGIYSYGKRFGFLRRQHYDGANIPMEIQPIDPVSKKSGNFCGTPG
YTQVSGELAACNWSFAPDAVEGFAQDLSPYTRVVWPRDEENTTPCTNDSE
CQELGAQEVCGVYEERTEGGSSLTGSLLPNVCGRLVGWAGAHTACGSITK
EGGTFPNDFPYDCALMARHGTFAQLYRCEGGVYSSHACYSMDAEDSCCGC
PPWDDENGYCVSTNPDWLLTAYPWAQFFKSVCPTAYSFPRDDLSSMFSCS
DAQSQEGTGEDSKNTQSYRIRFCPGSSEDQFYS*
back to top

mRNA from alignment at H-elongata_contig68546:422..3266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68546.14491.1 ID=mRNA_H-elongata_contig68546.14491.1|Name=mRNA_H-elongata_contig68546.14491.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2845bp|location=Sequence derived from alignment at H-elongata_contig68546:422..3266- (Himanthalia elongata Himel1 dioecious)
CGGGGTCTCCACCAAAGCGGAATTTACTCTTACGGAAAGCGGTTTGGATT TCTACGACGTCAGCATTACGATGGGTATGATACGTATATATGTCGGTCAT ACTATGTGTGGTGTGGATGGGTGTTTCCATGCCTTTTATTTTAGCCTGAT TTCGTACGCGTTAAGTGCCTTGACGACGGAGCATCCGGCTAGGGAGGGAG ACGAGACTCAATGAGCTTATAGTTTGGCACTATGTCCGATGCTTCATCCC GGGTGCCAATGCGCGGGAAGTAGTGCCCCTGAAATTGAACCACGTAACAT CGCTTTCGCTTGAGGGATCTCGACCGTCATCCGATCAATGCAGGGCAAAT ATTCCAATGGAAATACAACCCATCGATCCGGTCTCAAAGAAAAGCGGTAA TTTCTGTGGAACTCCAGGATACACACAGGTCTCCGGAGGTACGATCAGAG CCTTAAGTCATTGGATATGTTGCCTTTAACGGTTTACATGCAAAACACAA TAGTTAAAAATCCAGAAAAACGCGTTCCTCGGTTTAACTTCCTACTTATT GACTGTGACACTCTCAGTCGTTTTATATTGCAATAACGGATAGAACGGAG TAGGAGGACTATCCGAACTTTCCGCTTCATATAGCGCTAATATCTTTTAT CTCTTGTCCGTAGATAATAATTCCATACGAATTTCTCCCACTGATGAAAC GAATTCCCCATATATGACAACACGTATTTTCAAAGAACTTGCAGCGTGCA ACTGGAGCTTCGCCCCAGACGCCGTAGAGGGTTTCGCACAAGACCTATCC CCCTACACCAGGGTGGTCTGGCCTCGTGATGAGGAAAACACGACGCCCTG CACGAATGATAGGTGCGACCACGAGACGTTTCTTTCCGCAGATACCAACC GTATTGTCAAACCATCGAGCATCGTGCTTTTAATGTGCCGGCTCTGAAAA CTCACATCGTGGCTCTCCTCTACACTCCCGTGAGGACGGCGGTAACCAAG TCAATCCGTGGCTGGGATCACCCTATGTGTATGGTAGGACTCTACATTGG GGTCACATGCACGAGAGTCAGTAACTATAAAGTGTGACATGTGCAACGCG CGTACGTCTTCACACCCAGTATCCTGCCCTCCGGTCGAACAAATGCCATG AGTAATTTAACCGCACATTTCTCCAGCGAGTGCCAGGAATTGGGGGCGCA GGAGGTTTGCGGTGTCTACGAGGAGAGGACGGAAGGGGGAAGCTCCTTGA CGGGGTCACTTCTTCCTAATGTCTGCGGGCGGCTAGTTGGCTGGGCCGGC GCCCATACAGCGTGTGGTTCCATCACCAAGGAGGGCGGTACTTTCCCAAA CGACTTTCCGTACGACTGTGCCCTCATGGCGAGGCATGGAACATTTGCAC AGGTACGCACGTGGTTCCTTAATGTGCATGTGTATGTGTGTGTCCGTATT TTGTATTTATTATATTAGTTGAAAGACAGCATTGCAAATAGAAGGCACAA AAGGAACAGGACAAAAGGATACCCATTGAGGAGAACTTAACGCACTTCAT GCATAGGATCTCACTCAGGCATATTGGCCCATTCTGTGGCACCCGGTAGT ACACACCCACTTGAGCACCCCTCGCCAGTCCTTCCTCTTACACAGTGCCA GCGCGATGATGCTGGGAACGCTGGCTGGTGTAGTTATAAGGTATGTTCTA TGCGCCTGTTAGTGCGTCAATTTCTACCGTGGGTGCTTCCTGCTCCGGCG TGTTTTCATTGCCTCCGCCTTCCCTACGTTTACCAGCTCTACCGGTGCGA GGGGGGGGTTTACAGCTCACATGCTTGCTACTCAATGGATGCAGAGGTAA GCTACGCCTGACAGAGCCGACAGATAGAAACCCGCCTTTGTTGACCTAGC AAAGTACACACGACTTTGCTCTATGACGCGTAACCTTTGGCGCTCGCGTT TTCCAATCCGTATTTTTTTTAACCGAGTTTGAACCTTATCATCCCACCCC ATCCGCTCAAATAAATCTACCGAGAACATGGTGCAAAGTTGGAGTCATGG GTCGACTTGGCTGATTAAAAAACGTACTTGATGTTTACTAAAACCACAAA GACCTTTAAAAACTCCCCATCGGAGGAAATTAAACTAACCCCTCTCACCC CCTTTCTTCACGACAACCCAATTGAAGCCCTGAAACCCCTGCGGGACTAA ACTCTCATGCAGAGCCGAAAATGGTTTATGTTTTCAAAGGAAATAAGTCT GCCTTGTAGTGAACGTAAGAAGCGATCTTCAACCTTTTTACGGGTGCTAT CGGTGTATTATACTTCTAGAGTAATTCAAAAGCGATTCTTCAGGACTAAC AATGTCGTCCACAAACCCGGACCCCCTTCATCCTTATTCAACCCGCCCGA TGCCCTCTCTTCATCGAAGGATTCATGCTGTGGCTGTCCTCCATGGGACG ACGAGAATGGATATTGTGTCTCAACGAATCCAGACTGGCTACTGACAGCC TATCCCTGGGCCCAATTCTTTAAATCTGTGTGTCCAACTGCCTATAGCTT CCCACGCGATGATCTGAGTTCCATGTTTTCATGTTCGGACGCACAGAGCC AGGAAGGCACCGGCGAAGACTCGAAAAACACACAGTCATGTGAGATTAAG ATTGGCGCGTTGCTTGTAAGACTCGCAAAGAAACGATAAACTTATTCACA TAAGATTCCAAAACCGATACCCTCTCATTTTCCGAATCACGAACGAATTT TATCCAGCGTCGTCACATTCCCGTTCCCTTGATCTAAAACGACAGATAGG ATCAGGTTCTGCCCCGGCAGCTCTGAAGATCAGTTCTACTCGTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig68546:422..3266-

>mRNA_H-elongata_contig68546.14491.1 ID=mRNA_H-elongata_contig68546.14491.1|Name=mRNA_H-elongata_contig68546.14491.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1704bp|location=Sequence derived from alignment at H-elongata_contig68546:422..3266- (Himanthalia elongata Himel1 dioecious)
CGGGGTCTCCACCAAAGCGGAATTTACTCTTACGGAAAGCGGTTTGGATT
TCTACGACGTCAGCATTACGATGGCGGGGTCTCCACCAAAGCGGAATTTA
CTCTTACGGAAAGCGGTTTGGATTTCTACGACGTCAGCATTACGATGGGG
CAAATATTCCAATGGAAATACAACCCATCGATCCGGTCTCAAAGAAAAGC
GGTAATTTCTGTGGAACTCCAGGATACACACAGGTCTCCGGAGGGCAAAT
ATTCCAATGGAAATACAACCCATCGATCCGGTCTCAAAGAAAAGCGGTAA
TTTCTGTGGAACTCCAGGATACACACAGGTCTCCGGAGAACTTGCAGCGT
GCAACTGGAGCTTCGCCCCAGACGCCGTAGAGGGTTTCGCACAAGACCTA
TCCCCCTACACCAGGGTGGTCTGGCCTCGTGATGAGGAAAACACGACGCC
CTGCACGAATGATAGAACTTGCAGCGTGCAACTGGAGCTTCGCCCCAGAC
GCCGTAGAGGGTTTCGCACAAGACCTATCCCCCTACACCAGGGTGGTCTG
GCCTCGTGATGAGGAAAACACGACGCCCTGCACGAATGATAGCGAGTGCC
AGGAATTGGGGGCGCAGGAGGTTTGCGGTGTCTACGAGGAGAGGACGGAA
GGGGGAAGCTCCTTGACGGGGTCACTTCTTCCTAATGTCTGCGGGCGGCT
AGTTGGCTGGGCCGGCGCCCATACAGCGTGTGGTTCCATCACCAAGGAGG
GCGGTACTTTCCCAAACGACTTTCCGTACGACTGTGCCCTCATGGCGAGG
CATGGAACATTTGCACAGCGAGTGCCAGGAATTGGGGGCGCAGGAGGTTT
GCGGTGTCTACGAGGAGAGGACGGAAGGGGGAAGCTCCTTGACGGGGTCA
CTTCTTCCTAATGTCTGCGGGCGGCTAGTTGGCTGGGCCGGCGCCCATAC
AGCGTGTGGTTCCATCACCAAGGAGGGCGGTACTTTCCCAAACGACTTTC
CGTACGACTGTGCCCTCATGGCGAGGCATGGAACATTTGCACAGCTCTAC
CGGTGCGAGGGGGGGGTTTACAGCTCACATGCTTGCTACTCAATGGATGC
AGAGCTCTACCGGTGCGAGGGGGGGGTTTACAGCTCACATGCTTGCTACT
CAATGGATGCAGAGGATTCATGCTGTGGCTGTCCTCCATGGGACGACGAG
AATGGATATTGTGTCTCAACGAATCCAGACTGGCTACTGACAGCCTATCC
CTGGGCCCAATTCTTTAAATCTGTGTGTCCAACTGCCTATAGCTTCCCAC
GCGATGATCTGAGTTCCATGTTTTCATGTTCGGACGCACAGAGCCAGGAA
GGCACCGGCGAAGACTCGAAAAACACACAGTCATGATTCATGCTGTGGCT
GTCCTCCATGGGACGACGAGAATGGATATTGTGTCTCAACGAATCCAGAC
TGGCTACTGACAGCCTATCCCTGGGCCCAATTCTTTAAATCTGTGTGTCC
AACTGCCTATAGCTTCCCACGCGATGATCTGAGTTCCATGTTTTCATGTT
CGGACGCACAGAGCCAGGAAGGCACCGGCGAAGACTCGAAAAACACACAG
TCATATAGGATCAGGTTCTGCCCCGGCAGCTCTGAAGATCAGTTCTACTC
GTAGATAGGATCAGGTTCTGCCCCGGCAGCTCTGAAGATCAGTTCTACTC
GTAG
back to top