mRNA_H-elongata_contig68523.14488.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68523.14488.1
Unique NamemRNA_H-elongata_contig68523.14488.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68523.14488.1 vs. uniprot
Match: D7FT79_ECTSI (Mitochondrial import receptor, Tom22 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT79_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 4.940e-45
Identity = 77/92 (83.70%), Postives = 82/92 (89.13%), Query Frame = 1 
Query:    1 QGLVAGGASLGKAGLGWAKWAARMTGRTGWILLTTAVVTLVPLVFEVTREAQLIEQEKMQINALLAEGKTRHEIASMGLYSALDPNVMGPEA 276
            Q LV  G SLG AG GWA+WAA+ TGRTGW+LLTTAVVTLVPLVFE+TREAQLIEQEK+ INALLAEGKTR EIA MGLYSALDPNVMGPEA
Sbjct:   20 QTLVVTGRSLGVAGFGWAQWAAKKTGRTGWVLLTTAVVTLVPLVFEITREAQLIEQEKIHINALLAEGKTRQEIAQMGLYSALDPNVMGPEA 111
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BLAST of mRNA_H-elongata_contig68523.14488.1 vs. uniprot
Match: A0A7S0SSA7_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSA7_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.220e-11
Identity = 32/75 (42.67%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:   40 GLGWAKWAARMTGRTGWILLTTAVVTLVPLVFEVTREAQLIEQEKMQINALLAEGKTRHEIASMGLYSALDPNVM 264
            GL ++K+   +    GW ++TT ++TL+PLV EV RE ++ + E++QI + LAEG +  E+A+ GL SAL P V+
Sbjct:   36 GLEYSKFTFMILRHVGWFIVTTGMITLLPLVLEVKREGEVEKLEQLQIQSRLAEGISPQELANNGLTSALPPKVL 110
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BLAST of mRNA_H-elongata_contig68523.14488.1 vs. uniprot
Match: A0A7S3HMU8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HMU8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.380e-10
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:   46 GWAKWA-ARMTGR-TGWILLTTAVVTLVPLVFEVTREAQLIEQEKMQINALLAEGKTRHEIASMGLYSALDPNVM 264
            GW  W      GR  GW ++TT ++T VPL+FEV RE+ L + E++QI   LAEG+T  E+A  GL +A++P V+
Sbjct:   34 GWNSWLWIYANGRMVGWFIVTTGMITAVPLLFEVKRESILEDLEQIQIGKQLAEGRTPQELAFEGLTAAVEPKVL 108
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BLAST of mRNA_H-elongata_contig68523.14488.1 vs. uniprot
Match: A0A835YN34_9STRA (Six-hairpin glycosidase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN34_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.310e-9
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   58 WAARMTGRTGWILLTTAVVTLVPLVFEVTREAQLIEQEKMQINALLAEGKTRHEIASMGLYSALDPNVM 264
            W+A+  GRT WI+ TT ++ + PL+ E+ RE Q+IE EK+Q+  LLA+G     I  MGL    DP V+
Sbjct:   44 WSAKYGGRTLWIVGTTTLMVVFPLMLEIEREQQIIEIEKLQVKDLLAQGVHPQRIHEMGLSLPRDPAVL 112
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BLAST of mRNA_H-elongata_contig68523.14488.1 vs. uniprot
Match: A0A7S3LEZ8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEZ8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.330e-8
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   55 KWAARMTGRTGWILLTTAVVTLVPLVFEVTREAQLIEQEKMQINALLAEGKTRHEIASMG 234
            +W  R  G+  +IL TT++V L+PL+FE+TREAQLIE E+++ N L ++G    ++  MG
Sbjct:   34 QWTYRYGGQAAFILATTSMVVLMPLLFEITREAQLIETERLEANDLRSKGYADRQLKEMG 93
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BLAST of mRNA_H-elongata_contig68523.14488.1 vs. uniprot
Match: A0A6T7HAY7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7HAY7_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.010e-7
Identity = 26/62 (41.94%), Postives = 41/62 (66.13%), Query Frame = 1 
Query:   49 WAKWAARMTGRTGWILLTTAVVTLVPLVFEVTREAQLIEQEKMQINALLAEGKTRHEIASMG 234
            W  W A+ +GR G+IL TT++V L+PL+ E+ REAQ +E E+ Q+  L ++G    ++  MG
Sbjct:   34 WGFWLAKKSGRIGFILATTSMVVLMPLMLEIGREAQGLEVERSQVKDLRSQGYADRQLQEMG 95
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BLAST of mRNA_H-elongata_contig68523.14488.1 vs. uniprot
Match: K0RMI0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RMI0_THAOC)

HSP 1 Score: 54.3 bits (129), Expect = 1.930e-7
Identity = 26/70 (37.14%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:   64 ARMTGRTGWILLTTAVVTLVPLVFEVTREAQLIEQEKMQINALLAEGKTRHEIASMGLYSA---LDPNVM 264
            A+M G+ G+ + TT++V L+PL+FE+ RE Q+IE +K+Q+  L  +G +  ++  +G   A   L P V+
Sbjct:   36 AKMGGKVGFYVATTSIVVLMPLIFEIMREGQMIETDKLQVKELRQQGYSDSQLQELGFPKAALGLSPAVL 105
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BLAST of mRNA_H-elongata_contig68523.14488.1 vs. uniprot
Match: A0A7S2PK28_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PK28_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.660e-7
Identity = 27/60 (45.00%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:   79 RTGWILLTTAVVTLVPLVFEVTREAQLIEQEKMQINALLAEGKTRHEIASMG-LYSALDP 255
            R G+I+ TTA+VTL+PL+FE+ RE+Q +E EK Q   L ++G +  ++  MG + SA+ P
Sbjct:   41 RVGFIVTTTAIVTLMPLIFEIGRESQTLEAEKSQAKDLRSQGFSDRQLEQMGFMVSAIRP 100
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BLAST of mRNA_H-elongata_contig68523.14488.1 vs. uniprot
Match: A0A7S0BZI4_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZI4_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.900e-7
Identity = 24/73 (32.88%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:   49 WAKWAARMTGRTGWILLTTAVVTLVPLVFEVTREAQLIEQEKMQINALLAEGKTRHEIASMGL--YSALDPNV 261
            W  WAA+ + R G+++ TT++V L+PL+FE+ RE Q +E E+     L ++G +  ++  +G   ++   P+V
Sbjct:   35 WGLWAAKKSARVGFVIATTSIVVLMPLIFELAREGQSLEVERAHSKDLKSQGYSERQLQELGFSEFAIRPPSV 107
[Close]
BLAST of mRNA_H-elongata_contig68523.14488.1 vs. uniprot
Match: A0A7S2ET61_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ET61_TRICV)

HSP 1 Score: 53.5 bits (127), Expect = 5.560e-7
Identity = 23/63 (36.51%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   58 WAARMTGRTGWILLTTAVVTLVPLVFEVTREAQLIEQEKMQINALLAEGKTRHEIASMGLYSA 246
            W +++  +  +++ TT++V  +PLVFE++RE Q+IE EK Q+  L A+G    ++  MG   A
Sbjct:   52 WISKIAAKVAYVVATTSIVLFMPLVFEISREQQMIEVEKSQVKDLRAQGYADRQLQEMGFCEA 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68523.14488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FT79_ECTSI4.940e-4583.70Mitochondrial import receptor, Tom22 homolog n=2 T... [more]
A0A7S0SSA7_9STRA7.220e-1142.67Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S3HMU8_9STRA1.380e-1045.33Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A835YN34_9STRA9.310e-944.93Six-hairpin glycosidase-like protein n=1 Tax=Tribo... [more]
A0A7S3LEZ8_9STRA1.330e-845.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6T7HAY7_9STRA1.010e-741.94Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K0RMI0_THAOC1.930e-737.14Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2PK28_9STRA2.660e-745.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S0BZI4_9STRA2.900e-732.88Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2ET61_TRICV5.560e-736.51Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68523contigH-elongata_contig68523:1473..2838 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial import receptor, Tom22 homolog
Ec32 orthologEc-06_003790.1
Exons2
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931079.6755865-CDS-H-elongata_contig68523:1472..16101622931079.6755865-CDS-H-elongata_contig68523:1472..1610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68523 1473..1610 +
1691679689.5564277-CDS-H-elongata_contig68523:1472..16101691679689.5564277-CDS-H-elongata_contig68523:1472..1610Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68523 1473..1610 +
1622931079.6916435-CDS-H-elongata_contig68523:2697..28381622931079.6916435-CDS-H-elongata_contig68523:2697..2838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68523 2698..2838 +
1691679689.5733378-CDS-H-elongata_contig68523:2697..28381691679689.5733378-CDS-H-elongata_contig68523:2697..2838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68523 2698..2838 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68523.14488.1prot_H-elongata_contig68523.14488.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68523 1473..2838 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68523.14488.1

>prot_H-elongata_contig68523.14488.1 ID=prot_H-elongata_contig68523.14488.1|Name=mRNA_H-elongata_contig68523.14488.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
QGLVAGGASLGKAGLGWAKWAARMTGRTGWILLTTAVVTLVPLVFEVTRE
AQLIEQEKMQINALLAEGKTRHEIASMGLYSALDPNVMGPEA*
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mRNA from alignment at H-elongata_contig68523:1473..2838+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68523.14488.1 ID=mRNA_H-elongata_contig68523.14488.1|Name=mRNA_H-elongata_contig68523.14488.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1366bp|location=Sequence derived from alignment at H-elongata_contig68523:1473..2838+ (Himanthalia elongata Himel1 dioecious)
CAGGGGCTTGTGGCTGGCGGGGCGTCACTCGGGAAGGCGGGGCTAGGGTG
GGCAAAGTGGGCGGCGCGGATGACGGGGCGAACCGGCTGGATCCTGTTGA
CGACAGCGGTCGTGACGCTCGTGCCTCTCGTATTCGAGGTACGCTTGTAG
TATGTCACCTCTGTTTTCCTTACCTCCGACGCATAAATATATACACCTGT
GCATTCACGACAAGCAATCCGATTCTTCGAGCGGTGTCCTCGTGCTCGTC
CTCACCACGCCTCATGTGCTGTCACCGGTGTCCCGTGGTGTATGGTGGGG
TTCCACGATGGAAAAGCGTATACACAGTACACAGTATTATATTCACTTAT
ATTAAAAATCGCGTTGTTACCTAGAGCTCTGATACACGCGGAGGGCGTGT
TCCCCAATGACTCCTCTGCTAATAGAATGTCGGAAAGAAAGTTACACAGT
CGTATATAAAGATGTCAGGCTTTTTCGCCGGTCGTAGTCACCGTTTACCA
CGGTTCTCCACGGCGGTACATGGGATACCTCTTACGCACGCATTCCTATA
AAAATAGGGTGGCAGGAGTGCATGCTTGGTGCTGTTTTCGGAAGGCTTAC
AAAAAAAAAAAATGGCCTGTCTTTTTCCCGGGGAGGAGCGGGAAGAAAAC
AAGGAATCCCGCCTGGCTGCACCACACACCAGTGTTGTTGCGTGTGAACG
CGGAGATGCGCGAAGAGTGTGATCGTTTCGGGTGGATGTGTCGGTATGAC
TCTCCGGAGACTGTAAGCGTGCGTCTTGTGGACGGTTGTCTTTTCTCTCT
CAGCCTTTGTAAACCCGTTTCTTTGTTTTGTTCACGCAATCAGCTGGTCG
TCGATGAGCACACGTCTCGGAAAGCCCCCTAACAGCAGAGAACAACTGGT
CGATGTTCCTTTTTCGTCTGGGGCGTGTGCACGTGGTTGTCGACCGTGAA
TAGCGTCACGCACCAGCCCTTGGAAGTCATTTGCGCCCATGCCTAGCGAT
TTTCTGTACTTGAACAGTACGCCAATCCTTCAAGAAGCATGTTTAGTGAC
CCGGGAGGACATCCTTATCAACAAACGACTATATTTAGTGTCAAGAAAAC
ACATTCCGAGAGTGTTCCCAGTTGCACACGCGGAGCTCTTTCCAGCTCTC
CAACCCACTCCGTTTCACTTGACAGGTCTTTTTTTTTCTTTGTCTTCTGG
CATATTTAAACCGCGTGTCGGGAAGGTGACAAGGGAAGCACAGCTCATCG
AGCAGGAAAAGATGCAAATCAACGCGCTTCTTGCCGAGGGCAAGACTCGT
CACGAGATTGCAAGTATGGGGCTCTACTCCGCGCTCGACCCGAACGTGAT
GGGGCCTGAGGCCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig68523:1473..2838+

>mRNA_H-elongata_contig68523.14488.1 ID=mRNA_H-elongata_contig68523.14488.1|Name=mRNA_H-elongata_contig68523.14488.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig68523:1473..2838+ (Himanthalia elongata Himel1 dioecious)
CAGGGGCTTGTGGCTGGCGGGGCGTCACTCGGGAAGGCGGGGCTAGGGTG
GGCAAAGTGGGCGGCGCGGATGACGGGGCGAACCGGCTGGATCCTGTTGA
CGACAGCGGTCGTGACGCTCGTGCCTCTCGTATTCGAGCAGGGGCTTGTG
GCTGGCGGGGCGTCACTCGGGAAGGCGGGGCTAGGGTGGGCAAAGTGGGC
GGCGCGGATGACGGGGCGAACCGGCTGGATCCTGTTGACGACAGCGGTCG
TGACGCTCGTGCCTCTCGTATTCGAGGTGACAAGGGAAGCACAGCTCATC
GAGCAGGAAAAGATGCAAATCAACGCGCTTCTTGCCGAGGGCAAGACTCG
TCACGAGATTGCAAGTATGGGGCTCTACTCCGCGCTCGACCCGAACGTGA
TGGGGCCTGAGGCCTGAGTGACAAGGGAAGCACAGCTCATCGAGCAGGAA
AAGATGCAAATCAACGCGCTTCTTGCCGAGGGCAAGACTCGTCACGAGAT
TGCAAGTATGGGGCTCTACTCCGCGCTCGACCCGAACGTGATGGGGCCTG
AGGCCTGA
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