prot_H-elongata_contig68458.14479.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig68458.14479.1
Unique Nameprot_H-elongata_contig68458.14479.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length49
Homology
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Match: D7G411_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G411_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.420e-13
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 0
Query:    1 MKQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEFSKAW 48
            +K LLNWTHP KT +V+  VA+ W++L++VPGR+IVL +GL EFSKAW
Sbjct: 1776 VKNLLNWTHPPKTLLVYAIVALAWLVLLVVPGRYIVLTLGLLEFSKAW 1823          
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Match: A0A6H5L011_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L011_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.310e-13
Identity = 30/48 (62.50%), Postives = 40/48 (83.33%), Query Frame = 0
Query:    1 MKQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEFSKAW 48
            +K LLNWTHP KT +V+  VA+ W++L++VPGR+IVL +GL EFSKAW
Sbjct: 1913 VKNLLNWTHPPKTLLVYTVVALAWLVLLVVPGRYIVLTLGLLEFSKAW 1960          
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Match: A0A7S3H4K2_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4K2_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.490e-8
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 0
Query:    1 MKQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEF 44
            +K LLNWT P KTF ++ A+  +W++ ++VPGR IVLA+GLYEF
Sbjct:  135 LKNLLNWTSPSKTFPLYVALVAVWLVTILVPGRLIVLAIGLYEF 178          
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Match: A0A7S2C9G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C9G1_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 7.600e-8
Identity = 23/49 (46.94%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    1 MKQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEFSKAWV 49
            +K LLNWTHP KT +V+ A   +W++++ VPGR+I L   L+EF K ++
Sbjct:   51 LKNLLNWTHPRKTCMVYVAAVSIWVVVIYVPGRYIFLLATLWEFLKKFI 99          
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Match: A0A7S3XLU3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLU3_HETAK)

HSP 1 Score: 50.4 bits (119), Expect = 6.830e-6
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 0
Query:    2 KQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEFS 45
            K LLNWTHP KT  V+ AV +L+ +L+ VP R +VLAVGL +FS
Sbjct:  192 KNLLNWTHPGKTAAVYLAVLLLYAVLVWVPVRLLVLAVGLQQFS 235          
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Match: A0A7S2KPX7_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KPX7_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.340e-5
Identity = 20/43 (46.51%), Postives = 32/43 (74.42%), Query Frame = 0
Query:    2 KQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEF 44
            + L  W  P K+ +VF A++++W++L I+P RFI+L+ GLYEF
Sbjct:  788 RNLFTWACPQKSMLVFSALSMVWIVLCIIPTRFIILSAGLYEF 830          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68458.14479.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G411_ECTSI2.420e-1362.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L011_9PHAE3.310e-1362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3H4K2_9STRA2.490e-856.82Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7S2C9G1_9STRA7.600e-846.94Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S3XLU3_HETAK6.830e-659.09Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2KPX7_9STRA1.340e-546.51Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..13
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 43..49
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 14..42
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68458contigH-elongata_contig68458:167..313 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68458.14479.1mRNA_H-elongata_contig68458.14479.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig68458 146..313 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig68458.14479.1 ID=prot_H-elongata_contig68458.14479.1|Name=mRNA_H-elongata_contig68458.14479.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MKQLLNWTHPHKTFIVFGAVAILWMLLMIVPGRFIVLAVGLYEFSKAWV
back to top