mRNA_H-elongata_contig68449.14478.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68449.14478.1
Unique NamemRNA_H-elongata_contig68449.14478.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68449.14478.1 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 2.580e-17
Identity = 107/340 (31.47%), Postives = 148/340 (43.53%), Query Frame = 2 
Query:    5 PDWFSADDTRGMMPLR-ASTFDS---SQRPPSPQE---IHLKPVALSDLQATVESLREWRKTLDMQSTA--SVSGGGGGDESRGSAVSLQQQSRSYAQRGRATP------KLTVPIENGAXXXXXXXXXXXXXXXXXXXXXXXYKVAQ--------------GNFDSNGTAAAAEGEEDEKQGKLNGQESPPSS--------DVGATWVNPVLVAFKRQQREAKALHAELEEKERARAVAMVEAXXXXXXXXXXXXXETEGVSGSEACGGKEEAGE----TIVQPGMDDAPDLAMAATSFDIRLATDEVSKPSLRRIDAVNIFHDLAEKSWASEPLSSSA 901
            PDW       G  PLR A TF        P SP +     LK V LS+ QA  ESLR WR++ D+++ +    SG G  +E R  AVSLQ+QSRS+A+ GRAT       K T  +  G                           A               G+    G      GE+  +   L+ QE   SS           A+  NPV+ AF+R+++EA A  AE+              XXXXX           G  G+ A    E+ GE    ++V+ G++DAP  A AA++  +R+A + +S  SLR  D+V    ++ E+SW   PLSSSA
Sbjct:  446 PDWSPNGGANGTFPLRRALTFGEVGGGHSPSSPADSGGARLKEVPLSEAQAMAESLRAWRQSFDVRNASFGGESGDGDAEEDRDRAVSLQEQSRSFARIGRATALFTSQTKWTTDVVGGGEGSSSVEATGLGLDPGGRSGGEEGSGAMXXXXXXXXXXXXXXGSRVDRGQRQDGVGEKTHRT--LSDQEWSSSSRRTVEMAASEAASLTNPVMAAFERKRKEAAARQAEVXXXXXXXXXXXXXXXXXXXKAGNGEVAPAAGAEGAPAAA--EDDGELHMGSVVRLGLNDAPGSASAASAAGLRIAAEGISNLSLRSRDSVENLQEMGEQSWGPLPLSSSA 781
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68449.14478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2B2_9PHAE2.580e-1731.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68449contigH-elongata_contig68449:2281..3189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005570.1
Exons1
Model size909
Cds size867
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68449.14478.1prot_H-elongata_contig68449.14478.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68449 2318..3184 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931078.504705-UTR-H-elongata_contig68449:2280..23171622931078.504705-UTR-H-elongata_contig68449:2280..2317Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68449 2281..2317 +
1691679689.1957078-UTR-H-elongata_contig68449:2280..23171691679689.1957078-UTR-H-elongata_contig68449:2280..2317Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68449 2281..2317 +
1622931078.5354342-UTR-H-elongata_contig68449:3184..31891622931078.5354342-UTR-H-elongata_contig68449:3184..3189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68449 3185..3189 +
1691679689.2162411-UTR-H-elongata_contig68449:3184..31891691679689.2162411-UTR-H-elongata_contig68449:3184..3189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68449 3185..3189 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931078.5203779-CDS-H-elongata_contig68449:2317..31841622931078.5203779-CDS-H-elongata_contig68449:2317..3184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68449 2318..3184 +
1691679689.2050054-CDS-H-elongata_contig68449:2317..31841691679689.2050054-CDS-H-elongata_contig68449:2317..3184Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68449 2318..3184 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68449.14478.1

>prot_H-elongata_contig68449.14478.1 ID=prot_H-elongata_contig68449.14478.1|Name=mRNA_H-elongata_contig68449.14478.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=289bp
MMPLRASTFDSSQRPPSPQEIHLKPVALSDLQATVESLREWRKTLDMQST
ASVSGGGGGDESRGSAVSLQQQSRSYAQRGRATPKLTVPIENGATPKLTV
PVESGATLKLAVPMENGYKVAQGNFDSNGTAAAAEGEEDEKQGKLNGQES
PPSSDVGATWVNPVLVAFKRQQREAKALHAELEEKERARAVAMVEAAKAE
AAKAAAETEETEGVSGSEACGGKEEAGETIVQPGMDDAPDLAMAATSFDI
RLATDEVSKPSLRRIDAVNIFHDLAEKSWASEPLSSSA*
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mRNA from alignment at H-elongata_contig68449:2281..3189+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68449.14478.1 ID=mRNA_H-elongata_contig68449.14478.1|Name=mRNA_H-elongata_contig68449.14478.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=909bp|location=Sequence derived from alignment at H-elongata_contig68449:2281..3189+ (Himanthalia elongata Himel1 dioecious)
TACACCGGACTGGTTTAGCGCTGATGACACTAGGGGGATGATGCCTCTCC
GCGCATCCACGTTCGATAGTAGTCAGCGGCCGCCGTCGCCGCAGGAGATC
CACTTGAAACCTGTGGCGCTGTCAGATCTGCAGGCGACAGTGGAATCTCT
GAGGGAGTGGCGCAAGACGCTGGACATGCAAAGCACCGCGTCAGTTTCGG
GCGGCGGCGGCGGAGATGAATCCAGAGGGTCTGCCGTGTCGCTGCAGCAG
CAGAGCCGATCGTATGCTCAACGGGGGCGAGCTACACCAAAGCTCACCGT
TCCTATAGAGAATGGAGCTACGCCGAAGCTCACCGTGCCTGTTGAAAGTG
GAGCTACGCTGAAGCTCGCCGTGCCTATGGAGAATGGTTACAAGGTCGCT
CAGGGTAATTTCGACTCCAACGGTACGGCCGCTGCTGCCGAAGGCGAGGA
AGACGAGAAGCAGGGGAAGCTCAACGGTCAGGAATCACCGCCGTCGAGTG
ATGTCGGGGCGACCTGGGTGAATCCCGTTCTGGTGGCGTTTAAGCGGCAG
CAGAGAGAGGCAAAGGCGCTGCACGCCGAGCTCGAGGAAAAAGAGCGGGC
GAGAGCGGTGGCGATGGTGGAGGCGGCAAAGGCCGAAGCCGCGAAGGCGG
CAGCAGAGACCGAGGAAACCGAAGGCGTCAGCGGTTCCGAAGCGTGCGGA
GGAAAGGAAGAGGCTGGAGAGACGATCGTACAACCGGGAATGGACGACGC
CCCGGATTTGGCGATGGCGGCCACGTCTTTCGACATTCGATTGGCAACGG
ACGAGGTGTCGAAGCCTTCCTTGCGTAGGATAGACGCTGTCAACATATTT
CACGACCTGGCGGAGAAGTCGTGGGCATCTGAGCCCCTGTCGTCCTCGGC
ATGAATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig68449:2281..3189+

>mRNA_H-elongata_contig68449.14478.1 ID=mRNA_H-elongata_contig68449.14478.1|Name=mRNA_H-elongata_contig68449.14478.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1734bp|location=Sequence derived from alignment at H-elongata_contig68449:2281..3189+ (Himanthalia elongata Himel1 dioecious)
ATGATGCCTCTCCGCGCATCCACGTTCGATAGTAGTCAGCGGCCGCCGTC
GCCGCAGGAGATCCACTTGAAACCTGTGGCGCTGTCAGATCTGCAGGCGA
CAGTGGAATCTCTGAGGGAGTGGCGCAAGACGCTGGACATGCAAAGCACC
GCGTCAGTTTCGGGCGGCGGCGGCGGAGATGAATCCAGAGGGTCTGCCGT
GTCGCTGCAGCAGCAGAGCCGATCGTATGCTCAACGGGGGCGAGCTACAC
CAAAGCTCACCGTTCCTATAGAGAATGGAGCTACGCCGAAGCTCACCGTG
CCTGTTGAAAGTGGAGCTACGCTGAAGCTCGCCGTGCCTATGGAGAATGG
TTACAAGGTCGCTCAGGGTAATTTCGACTCCAACGGTACGGCCGCTGCTG
CCGAAGGCGAGGAAGACGAGAAGCAGGGGAAGCTCAACGGTCAGGAATCA
CCGCCGTCGAGTGATGTCGGGGCGACCTGGGTGAATCCCGTTCTGGTGGC
GTTTAAGCGGCAGCAGAGAGAGGCAAAGGCGCTGCACGCCGAGCTCGAGG
AAAAAGAGCGGGCGAGAGCGGTGGCGATGGTGGAGGCGGCAAAGGCCGAA
GCCGCGAAGGCGGCAGCAGAGACCGAGGAAACCGAAGGCGTCAGCGGTTC
CGAAGCGTGCGGAGGAAAGGAAGAGGCTGGAGAGACGATCGTACAACCGG
GAATGGACGACGCCCCGGATTTGGCGATGGCGGCCACGTCTTTCGACATT
CGATTGGCAACGGACGAGGTGTCGAAGCCTTCCTTGCGTAGGATAGACGC
TGTCAACATATTTCACGACCTGGCGGAGAAGTCGTGGGCATCTGAGCCCC
TGTCGTCCTCGGCATGAATGATGCCTCTCCGCGCATCCACGTTCGATAGT
AGTCAGCGGCCGCCGTCGCCGCAGGAGATCCACTTGAAACCTGTGGCGCT
GTCAGATCTGCAGGCGACAGTGGAATCTCTGAGGGAGTGGCGCAAGACGC
TGGACATGCAAAGCACCGCGTCAGTTTCGGGCGGCGGCGGCGGAGATGAA
TCCAGAGGGTCTGCCGTGTCGCTGCAGCAGCAGAGCCGATCGTATGCTCA
ACGGGGGCGAGCTACACCAAAGCTCACCGTTCCTATAGAGAATGGAGCTA
CGCCGAAGCTCACCGTGCCTGTTGAAAGTGGAGCTACGCTGAAGCTCGCC
GTGCCTATGGAGAATGGTTACAAGGTCGCTCAGGGTAATTTCGACTCCAA
CGGTACGGCCGCTGCTGCCGAAGGCGAGGAAGACGAGAAGCAGGGGAAGC
TCAACGGTCAGGAATCACCGCCGTCGAGTGATGTCGGGGCGACCTGGGTG
AATCCCGTTCTGGTGGCGTTTAAGCGGCAGCAGAGAGAGGCAAAGGCGCT
GCACGCCGAGCTCGAGGAAAAAGAGCGGGCGAGAGCGGTGGCGATGGTGG
AGGCGGCAAAGGCCGAAGCCGCGAAGGCGGCAGCAGAGACCGAGGAAACC
GAAGGCGTCAGCGGTTCCGAAGCGTGCGGAGGAAAGGAAGAGGCTGGAGA
GACGATCGTACAACCGGGAATGGACGACGCCCCGGATTTGGCGATGGCGG
CCACGTCTTTCGACATTCGATTGGCAACGGACGAGGTGTCGAAGCCTTCC
TTGCGTAGGATAGACGCTGTCAACATATTTCACGACCTGGCGGAGAAGTC
GTGGGCATCTGAGCCCCTGTCGTCCTCGGCATGA
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