mRNA_H-elongata_contig68440.14477.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68440.14477.1
Unique NamemRNA_H-elongata_contig68440.14477.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: D8LRA5_ECTSI (SEC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA5_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.570e-45
Identity = 82/112 (73.21%), Postives = 95/112 (84.82%), Query Frame = 1
Query:    4 SALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMANLDQM 339
            S LEL+ PFL V+RSPE NGVLT+AAL+SLQ F  +RL++E+SVHA  AV +LVDALIGCRFEETQ+ HDEAVRA I+ +L ACLEGGAG WL DEVVW +LQTCMANLDQM
Sbjct:   60 SRLELVSPFLLVVRSPETNGVLTEAALRSLQVFSRDRLIEENSVHASEAVGDLVDALIGCRFEETQQDHDEAVRARIMHVLAACLEGGAGVWLSDEVVWAVLQTCMANLDQM 171          
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A6H5L1A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A5_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.480e-32
Identity = 66/112 (58.93%), Postives = 77/112 (68.75%), Query Frame = 1
Query:    4 SALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMANLDQM 339
            S LEL+ PFL+V+RSPE NGVLT+AAL+SLQAF  +RL+                      FEETQ+ HDEAVRA I+ +L ACLEGGAG  L DEVVW +LQTCMANLDQM
Sbjct:   60 SRLELVSPFLSVVRSPETNGVLTEAALRSLQAFSRDRLIGG--------------------FEETQQDHDEAVRARIMHVLAACLEGGAGVCLSDEVVWAVLQTCMANLDQM 151          
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A7R9U6R0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6R0_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.430e-21
Identity = 47/109 (43.12%), Postives = 70/109 (64.22%), Query Frame = 1
Query:    1 FSALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMAN 327
            FSAL+++ P L V+RSP+A+G  T AAL+++++ L    L    VHA  A  E+++A+  CRFE+T    DE V A ++ +LV C+ G  G ++ DE VW+ LQTC  N
Sbjct:   58 FSALDIVAPLLVVVRSPQASGPFTLAALRAIKSLLQRGALASHLVHAPDAANEVIEAVAACRFEQTDAQLDEVVLAELMDVLVCCIRGPLGQYVGDEAVWDALQTCFVN 166          
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A1E3QMU8_9ASCO (SEC7 domain-containing protein (Fragment) n=1 Tax=Babjeviella inositovora NRRL Y-12698 TaxID=984486 RepID=A0A1E3QMU8_9ASCO)

HSP 1 Score: 82.8 bits (203), Expect = 3.950e-16
Identity = 46/107 (42.99%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    7 ALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGA-GAWLPDEVVWEMLQTCMA 324
            +L LL PFL V++SP  +G++T  AL S+  FL   LL  DS +   +++++V AL  CRFE   +  D+AV   +++LL A L GG   A+L DEVV E++QTC++
Sbjct:   88 SLTLLQPFLLVIKSPSTSGMITSLALNSINKFLTYGLLSLDSKNIHVSISQVVSALTHCRFEAGDQASDDAVLLKVLRLLEALLVGGTISAYLTDEVVTEVIQTCLS 194          
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A4D9CY88_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY88_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 9.520e-15
Identity = 49/113 (43.36%), Postives = 65/113 (57.52%), Query Frame = 1
Query:   13 ELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDS------VHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLL--VACLEGGAGAWLPDEVVWEMLQTCMAN 327
            E+L PFL ++RS EA+G  T A L+SLQA L   +L E        V    AV  LV+ L+ CRFEET+ G DE VR  ++ LL  V   EG A  W+ D  VWE++  C+ +
Sbjct:   94 EVLSPFLEIVRSGEASGPFTGAGLRSLQALLDAGVLSEGGREGGREVRRGLAVQVLVEGLVRCRFEETERGEDEVVRMQVLGLLREVMGREGWA-RWVGDAAVWEVVVACLES 205          
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: F2QPM3_KOMPC (ARF guanine-nucleotide exchange factor 2 n=3 Tax=Komagataella TaxID=460517 RepID=F2QPM3_KOMPC)

HSP 1 Score: 78.6 bits (192), Expect = 1.210e-14
Identity = 43/106 (40.57%), Postives = 67/106 (63.21%), Query Frame = 1
Query:    7 ALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMA 324
            +L LL PFL V++SPE +G +T  AL +L   L   LL E S++A+ A+ + VDAL  CRF+      D+AV   ++ LL A +E   G  L D+V+++++QTC++
Sbjct:  106 SLTLLQPFLMVVKSPETSGYVTSLALTTLHKVLRYSLLTESSLNAVSALHQTVDALTHCRFQSDNTS-DDAVLLRVLGLLQAIVESSVGYLLSDDVLYDIIQTCLS 210          
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A446N5W3_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446N5W3_TRITD)

HSP 1 Score: 72.4 bits (176), Expect = 3.270e-13
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   16 LLF--PFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMANLDQ 336
            LLF  PFL V+RS EA    T AAL SL   L   L+  D+  A  A+A +V+A+ GCRFE T    +EAV A  +Q+L+AC+ G A   L +  V +++ TC   + Q
Sbjct:   70 LLFLGPFLDVVRSDEAGAPATGAALSSLCKVLSLDLVGPDAPGADRAMAAVVEAVAGCRFEVTDAASEEAVLARALQVLLACVRGRAARALSNRHVCDVVSTCFRVVQQ 178          
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: F2DIW3_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2DIW3_HORVV)

HSP 1 Score: 71.2 bits (173), Expect = 9.560e-13
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   19 LFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMANLDQ 336
            L PFL V+RS EA    T AAL SL   L       D+  A  A+A +V+A+ GCRFE T    +EAV A  +Q+L+AC+ G A   L +  V +++ TC   + Q
Sbjct:   76 LGPFLGVVRSDEAGAPATGAALSSLCKVLSLDPFGPDAPGAARAMAAVVEAVAGCRFEVTDAASEEAVLARALQVLLACVRGRAAPALSNRHVCDVVSTCFRVVQQ 181          
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A3B6EF81_WHEAT (SEC7 domain-containing protein n=5 Tax=Triticinae TaxID=1648030 RepID=A0A3B6EF81_WHEAT)

HSP 1 Score: 72.4 bits (176), Expect = 1.750e-12
Identity = 46/109 (42.20%), Postives = 63/109 (57.80%), Query Frame = 1
Query:   16 LLF--PFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMANLDQ 336
            LLF  PFL V+RS EA    T AAL SL   L   L+  D+  A  A+A +V+A+ GCRFE T    +EAV A  +Q+L+AC+ G A   L +  V +++ TC   + Q
Sbjct:   70 LLFLGPFLDVVRSDEAGAPATGAALSSLCKVLSLDLVGPDAPGADRAMAAVVEAVAGCRFEVTDAASEEAVLARALQVLLACVRGRAARALSNRHVCDVVSTCFRVVQQ 178          
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Match: A0A421JCW7_9ASCO (Orotidine 5'-phosphate decarboxylase n=3 Tax=Meyerozyma TaxID=766728 RepID=A0A421JCW7_9ASCO)

HSP 1 Score: 72.4 bits (176), Expect = 1.760e-12
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 1
Query:    7 ALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGAVAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVWEMLQTCMA 324
            +L LL PFL V++S   +G +T  AL SLQ F+   +++  S +   A+ ++V +L  CRFE   +  D+AV   +++LL   LE      LP+E+V E++QTC++
Sbjct:   95 SLTLLQPFLMVIKSSSTSGRITALALSSLQKFIRYDIINIHSKNVQNAMIQIVTSLTHCRFEAADQNSDDAVLLKVLRLLELILESPLSNLLPNEIVSEVVQTCLS 200          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68440.14477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRA5_ECTSI1.570e-4573.21SEC7 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L1A5_9PHAE1.480e-3258.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9U6R0_9STRA3.430e-2143.12Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A1E3QMU8_9ASCO3.950e-1642.99SEC7 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A4D9CY88_9STRA9.520e-1543.36Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
F2QPM3_KOMPC1.210e-1440.57ARF guanine-nucleotide exchange factor 2 n=3 Tax=K... [more]
A0A446N5W3_TRITD3.270e-1342.20Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
F2DIW3_HORVV9.560e-1340.57Predicted protein n=1 Tax=Hordeum vulgare subsp. v... [more]
A0A3B6EF81_WHEAT1.750e-1242.20SEC7 domain-containing protein n=5 Tax=Triticinae ... [more]
A0A421JCW7_9ASCO1.760e-1236.79Orotidine 5'-phosphate decarboxylase n=3 Tax=Meyer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68440contigH-elongata_contig68440:1362..2264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.7
Seed ortholog evalue1.6e-39
Seed eggNOG ortholog2880.D8LRA5
KEGG koko:K18442,ko:K18443
KEGG Pathwayko04144,map04144
GOsGO:0000137,GO:0003674,GO:0005085,GO:0005086,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005798,GO:0005802,GO:0005829,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006914,GO:0006996,GO:0007010,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0019898,GO:0019899,GO:0030029,GO:0030036,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046907,GO:0048193,GO:0051020,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061919,GO:0065007,GO:0065009,GO:0071840,GO:0097708,GO:0098772,GO:0098791
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0928@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categorysignal peptide
Exons2
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931078.4464192-CDS-H-elongata_contig68440:1361..14821622931078.4464192-CDS-H-elongata_contig68440:1361..1482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68440 1362..1482 +
1691679689.1746523-CDS-H-elongata_contig68440:1361..14821691679689.1746523-CDS-H-elongata_contig68440:1361..1482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68440 1362..1482 +
1622931078.4651062-CDS-H-elongata_contig68440:2046..22641622931078.4651062-CDS-H-elongata_contig68440:2046..2264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68440 2047..2264 +
1691679689.186518-CDS-H-elongata_contig68440:2046..22641691679689.186518-CDS-H-elongata_contig68440:2046..2264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68440 2047..2264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68440.14477.1prot_H-elongata_contig68440.14477.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68440 1362..2264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68440.14477.1

>prot_H-elongata_contig68440.14477.1 ID=prot_H-elongata_contig68440.14477.1|Name=mRNA_H-elongata_contig68440.14477.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
FSALELLFPFLAVLRSPEANGVLTDAALKSLQAFLGERLLDEDSVHALGA
VAELVDALIGCRFEETQEGHDEAVRAHIIQLLVACLEGGAGAWLPDEVVW
EMLQTCMANLDQM
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mRNA from alignment at H-elongata_contig68440:1362..2264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68440.14477.1 ID=mRNA_H-elongata_contig68440.14477.1|Name=mRNA_H-elongata_contig68440.14477.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=903bp|location=Sequence derived from alignment at H-elongata_contig68440:1362..2264+ (Himanthalia elongata Himel1 dioecious)
TTCAGCGCGCTCGAGCTTCTGTTCCCTTTTCTCGCGGTATTGCGATCACC GGAGGCGAATGGCGTGCTGACCGACGCCGCGCTGAAATCCCTGCAGGCGT TTCTTGGTGAACGTCTTTTAGGTTCGTGTTTTATTTTCTTCTTCTTTTCC TCCTTCACTCCAGCACTACTTGTAGCCGACAGACTGATGCGTGTTGCGTT TTATGTATGCGCCCCGAGAGTGGCGTGTATCCCCGACTTGCTGCGTACCC GTCCAACTGCGGGGTATACCCCCCCTCCCCCTGCCCCTCCCTCCCTCCCT GTACTGATGTGGCGTACGGTAGTGGTCCGATGACCCTTCGGCATCCTTAC GTTCCCTTTGCCCCGATTTTCCACTCGTCGGTGGCGTACGCTCTTGAGAG ATAGTTGTGGTCTATTCCAGCAGTGTGACCAGACCAGGTGCACTCATCCC AACATCGTAGCAAGAAATTATGCACGGCGAGATTAGGCTGGGTAGGGGCT AGCACCTTCCTCCGCTATATCGTACCTGTGTTGCACACGCTGCTCGAGTG TAAAGGTAACCGGCCCATCACCACGCGCGCTTGCGTTTTTTCCCTCTTTC ATTATTTGCCTGTTTTCCTGGGATAAAACGGGGGGGGGTGGAAACTACCC ACCTTTGGCCGTGACCTGCGGGAAAACGATCCCAGATGAGGATTCCGTTC ACGCCCTGGGAGCGGTCGCGGAGCTCGTGGATGCTCTGATCGGATGCCGT TTTGAGGAGACTCAGGAGGGGCACGACGAGGCTGTCCGGGCGCACATCAT CCAGCTTTTGGTGGCGTGTCTGGAAGGGGGCGCGGGGGCGTGGTTGCCGG ACGAGGTGGTGTGGGAGATGCTGCAGACGTGCATGGCAAACCTGGATCAG ATG
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Coding sequence (CDS) from alignment at H-elongata_contig68440:1362..2264+

>mRNA_H-elongata_contig68440.14477.1 ID=mRNA_H-elongata_contig68440.14477.1|Name=mRNA_H-elongata_contig68440.14477.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig68440:1362..2264+ (Himanthalia elongata Himel1 dioecious)
TTCAGCGCGCTCGAGCTTCTGTTCCCTTTTCTCGCGGTATTGCGATCACC
GGAGGCGAATGGCGTGCTGACCGACGCCGCGCTGAAATCCCTGCAGGCGT
TTCTTGGTGAACGTCTTTTAGTTCAGCGCGCTCGAGCTTCTGTTCCCTTT
TCTCGCGGTATTGCGATCACCGGAGGCGAATGGCGTGCTGACCGACGCCG
CGCTGAAATCCCTGCAGGCGTTTCTTGGTGAACGTCTTTTAGATGAGGAT
TCCGTTCACGCCCTGGGAGCGGTCGCGGAGCTCGTGGATGCTCTGATCGG
ATGCCGTTTTGAGGAGACTCAGGAGGGGCACGACGAGGCTGTCCGGGCGC
ACATCATCCAGCTTTTGGTGGCGTGTCTGGAAGGGGGCGCGGGGGCGTGG
TTGCCGGACGAGGTGGTGTGGGAGATGCTGCAGACGTGCATGGCAAACCT
GGATCAGATGATGAGGATTCCGTTCACGCCCTGGGAGCGGTCGCGGAGCT
CGTGGATGCTCTGATCGGATGCCGTTTTGAGGAGACTCAGGAGGGGCACG
ACGAGGCTGTCCGGGCGCACATCATCCAGCTTTTGGTGGCGTGTCTGGAA
GGGGGCGCGGGGGCGTGGTTGCCGGACGAGGTGGTGTGGGAGATGCTGCA
GACGTGCATGGCAAACCTGGATCAGATG
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