mRNA_H-elongata_contig68402.14473.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig68402.14473.1
Unique Name	mRNA_H-elongata_contig68402.14473.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig68402.14473.1 vs. uniprot
Match: D7FIC3_ECTSI (SUN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIC3_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 2.540e-33
Identity = 64/107 (59.81%), Postives = 74/107 (69.16%), Query Frame = 1

Query:    1 YANVIAARAQINSDELTSATFTPDGWLFPSTLMHQAGVENGIGPVDSVISEDSSLGRCWVMKGSVGRVTIQLPTEITVDGVSLEHASRMVTHESTSAPRDFEVCKLK 321
            YAN       + S  + S T+TP  W  PS   H AGVENG+GPV+SVISE SSLG CW M GS G VTIQLP +ITVDGVS+EH SRMVT ES SAP++ EV  +K
Sbjct:  245 YANAALGGKVLTSKGMVSDTYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPKKITVDGVSVEHVSRMVTTESGSAPKELEVWGMK 351

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BLAST of mRNA_H-elongata_contig68402.14473.1 vs. uniprot
Match: A0A6H5J860_9PHAE (SUN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J860_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.100e-32
Identity = 63/107 (58.88%), Postives = 74/107 (69.16%), Query Frame = 1

Query:    1 YANVIAARAQINSDELTSATFTPDGWLFPSTLMHQAGVENGIGPVDSVISEDSSLGRCWVMKGSVGRVTIQLPTEITVDGVSLEHASRMVTHESTSAPRDFEVCKLK 321
            YAN       + S  + S T+TP  W  PS   H AGVENG+GPV+SVISE SSLG CW M GS G VTIQLP +ITVDGVS+EH SRMVT ES SAP++ EV  ++
Sbjct:  365 YANAALGGKVLTSKGMVSETYTPSSWWGPSRYWHGAGVENGVGPVESVISEGSSLGACWAMSGSEGLVTIQLPEKITVDGVSVEHVSRMVTTESGSAPKEIEVWGMR 471

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BLAST of mRNA_H-elongata_contig68402.14473.1 vs. uniprot
Match: A0A1D1XD20_9ARAE (SUN domain-containing protein 2 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XD20_9ARAE)

HSP 1 Score: 48.5 bits (114), Expect = 8.500e-5
Identity = 19/48 (39.58%), Postives = 34/48 (70.83%), Query Frame = 1

Query:  166 GRCWVMKGSVGRVTIQLPTEITVDGVSLEHASRMVTHESTSAPRDFEV 309
            G+C+ + GS G V ++L T I +D ++LEH S+ V ++ +SAP+D ++
Sbjct:    7 GQCFPLHGSTGFVEVKLRTAIILDSITLEHVSKSVAYDRSSAPKDCQI 54

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig68402.14473.1 vs. uniprot

BLAST of mRNA_H-elongata_contig68402.14473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FIC3_ECTSI	2.540e-33	59.81	SUN domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A6H5J860_9PHAE	2.100e-32	58.88	SUN domain-containing protein n=1 Tax=Ectocarpus s...	[more]
A0A1D1XD20_9ARAE	8.500e-5	39.58	SUN domain-containing protein 2 (Fragment) n=1 Tax...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig68402	contig	H-elongata_contig68402:2111..3148 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	128.3
Seed ortholog evalue	2.2e-27
Seed eggNOG ortholog	2880.D7FIC3
Preferred name	SUN3
KEGG ko	ko:K06545,ko:K19347,ko:K21874,ko:K21875,ko:K21876
GOs	GO:0000003,GO:0000280,GO:0003006,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005637,GO:0005737,GO:0005783,GO:0005789,GO:0005819,GO:0005856,GO:0005874,GO:0005929,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007049,GO:0007059,GO:0007127,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008104,GO:0008150,GO:0008360,GO:0009524,GO:0009790,GO:0009792,GO:0009987,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0019866,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0030154,GO:0031090,GO:0031224,GO:0031514,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032878,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034397,GO:0034398,GO:0034504,GO:0034613,GO:0034992,GO:0034993,GO:0036126,GO:0042175,GO:0042802,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043495,GO:0043621,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044821,GO:0045132,GO:0045141,GO:0045143,GO:0045185,GO:0046605,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048609,GO:0048856,GO:0048869,GO:0050000,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051234,GO:0051235,GO:0051259,GO:0051260,GO:0051276,GO:0051291,GO:0051303,GO:0051321,GO:0051493,GO:0051640,GO:0051641,GO:0051642,GO:0051649,GO:0051651,GO:0051656,GO:0051704,GO:0051726,GO:0061024,GO:0061842,GO:0061982,GO:0065003,GO:0065007,GO:0065008,GO:0070192,GO:0070197,GO:0070507,GO:0070727,GO:0071840,GO:0090220,GO:0090286,GO:0090435,GO:0097223,GO:0097224,GO:0097240,GO:0097729,GO:0098796,GO:0098813,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0106083,GO:0106094,GO:0120025,GO:0120038,GO:0140013,GO:1903046,GO:2000769
EggNOG free text desc.	cytoskeletal anchoring at nuclear membrane
EggNOG OGs	KOG2687@1,KOG2687@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03036,ko04090
Hectar predicted targeting category	other localisation
Ec32 ortholog description	SUN domain
Ec32 ortholog	Ec-11_001360.1
Exons	2
Model size	321
Cds size	321
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622931078.068717-CDS-H-elongata_contig68402:2110..2232	1622931078.068717-CDS-H-elongata_contig68402:2110..2232	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig68402 2111..2232 +
1691679688.998012-CDS-H-elongata_contig68402:2110..2232	1691679688.998012-CDS-H-elongata_contig68402:2110..2232	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig68402 2111..2232 +
1622931078.0866601-CDS-H-elongata_contig68402:2949..3148	1622931078.0866601-CDS-H-elongata_contig68402:2949..3148	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig68402 2950..3148 +
1691679689.007676-CDS-H-elongata_contig68402:2949..3148	1691679689.007676-CDS-H-elongata_contig68402:2949..3148	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig68402 2950..3148 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig68402.14473.1	prot_H-elongata_contig68402.14473.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig68402 2111..3148 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig68402:2111..3148+
coding sequence from alignment at H-elongata_contig68402:2111..3148+

protein sequence of mRNA_H-elongata_contig68402.14473.1

>prot_H-elongata_contig68402.14473.1 ID=prot_H-elongata_contig68402.14473.1|Name=mRNA_H-elongata_contig68402.14473.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
YANVIAARAQINSDELTSATFTPDGWLFPSTLMHQAGVENGIGPVDSVIS
EDSSLGRCWVMKGSVGRVTIQLPTEITVDGVSLEHASRMVTHESTSAPRD
FEVCKLK

mRNA from alignment at H-elongata_contig68402:2111..3148+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig68402.14473.1 ID=mRNA_H-elongata_contig68402.14473.1|Name=mRNA_H-elongata_contig68402.14473.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1038bp|location=Sequence derived from alignment at H-elongata_contig68402:2111..3148+ (Himanthalia elongata Himel1 dioecious)
TACGCAAACGTGATCGCGGCCCGGGCGCAGATCAACTCAGACGAGCTGAC
GTCCGCGACATTCACGCCTGACGGCTGGCTGTTTCCGTCGACCTTGATGC
ACCAAGCCGGCGTCGAGAATGGGTGAGAGCACAATAGAAATTTTACGACT
TCGGTCGGAAATTGGCTGCTTTTTCTGATCTAGAGAAATAATAACAAGGA
TGCGTATAGATCTACATCCTTAACTCTATGCAAGTATATACACATGCTTT
GGACGGATTTGCAAAATAGCCTCGATAACGGAGGCCTGAAAGAATGTGCG
TCTCTGCCATATATCGGTGCCTCGCTCGTTCGGAGCCGTTGTTTTGTTAA
TTTTGGGGTATACTGTGGTCATCAACCGGATTTGGTTGCCTTCTGCTCGA
GGTCAGGTGAATGGACCGTATCTGGTATTAATTAGTTAATGTCGGAGTTT
ACTGAATTGGTGTCGGGGTGGTGTTTTTGTTGATGTCGTTGTTGGTGTTG
CTGCTGTTGTTCTCCCATTGTGCCGATTGGGGCTATTCTCAACCCCCGCT
TGTGGTTTATTGGCTGAATAATGACAAGATGAGAAGGAAGGAAGAAATAC
CGAACAGAAAAACACAAAAATATGTGAGTATGTAGCATTGCCTATCTCGC
GCGCCCCCGTCTTCTTGCGCGCTATCGATTATCCTCTCATCGTTCGTTAC
ACACGATCACACTATAGTTGGCTCCTTCTTTTACATTTACCGTCGCTCTC
TGCCCCCCCCCCCCCCCCGTGTTCCCTTGTTCCCCTCTTGGCACCGTGGC
CTCAATCGGTGACAAAACCAACCGTGCGAGGCATTACAGCATCGGCCCCG
TGGACTCGGTGATATCGGAGGACAGCAGCCTGGGCAGGTGCTGGGTCATG
AAGGGCAGTGTCGGCAGAGTCACGATCCAGTTGCCCACGGAGATCACCGT
GGACGGCGTTTCCCTCGAGCACGCCTCGAGGATGGTAACGCACGAGAGCA
CCTCCGCTCCTCGAGACTTCGAGGTCTGTAAATTGAAG

Coding sequence (CDS) from alignment at H-elongata_contig68402:2111..3148+

>mRNA_H-elongata_contig68402.14473.1 ID=mRNA_H-elongata_contig68402.14473.1|Name=mRNA_H-elongata_contig68402.14473.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig68402:2111..3148+ (Himanthalia elongata Himel1 dioecious)
TACGCAAACGTGATCGCGGCCCGGGCGCAGATCAACTCAGACGAGCTGAC
GTCCGCGACATTCACGCCTGACGGCTGGCTGTTTCCGTCGACCTTGATGC
ACCAAGCCGGCGTCGAGAATGGTACGCAAACGTGATCGCGGCCCGGGCGC
AGATCAACTCAGACGAGCTGACGTCCGCGACATTCACGCCTGACGGCTGG
CTGTTTCCGTCGACCTTGATGCACCAAGCCGGCGTCGAGAATGGCATCGG
CCCCGTGGACTCGGTGATATCGGAGGACAGCAGCCTGGGCAGGTGCTGGG
TCATGAAGGGCAGTGTCGGCAGAGTCACGATCCAGTTGCCCACGGAGATC
ACCGTGGACGGCGTTTCCCTCGAGCACGCCTCGAGGATGGTAACGCACGA
GAGCACCTCCGCTCCTCGAGACTTCGAGGTCTGTAAATTGAAGCATCGGC
CCCGTGGACTCGGTGATATCGGAGGACAGCAGCCTGGGCAGGTGCTGGGT
CATGAAGGGCAGTGTCGGCAGAGTCACGATCCAGTTGCCCACGGAGATCA
CCGTGGACGGCGTTTCCCTCGAGCACGCCTCGAGGATGGTAACGCACGAG
AGCACCTCCGCTCCTCGAGACTTCGAGGTCTGTAAATTGAAG