mRNA_H-elongata_contig6840.14472.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig6840.14472.1 vs. uniprot
Match: A0A6H5L457_9PHAE (zf-Tim10_DDP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L457_9PHAE) HSP 1 Score: 142 bits (357), Expect = 1.440e-39 Identity = 71/93 (76.34%), Postives = 83/93 (89.25%), Query Frame = 1
Query: 1 MTPAQQQQFMQYLETQQRKDSLAMYNNLVFKCFEDCSRSFRSRRLDDSETKCINVCAEKFIKLTGRVARRFQDLQQQKAKEEQAAATAAGLQR 279
MTP QQQ F+Q+LE+QQRKDSLAMYNNLVF+CF++CS+SFRS+RLDD ETKCINVCAEK+IKLT RVA RFQD+QQQKAK+E AAG+QR
Sbjct: 1 MTPVQQQDFLQHLESQQRKDSLAMYNNLVFRCFDECSKSFRSKRLDDGETKCINVCAEKYIKLTSRVALRFQDIQQQKAKDE-----AAGVQR 88
BLAST of mRNA_H-elongata_contig6840.14472.1 vs. uniprot
Match: A0A024TE29_9STRA (zf-Tim10_DDP domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024TE29_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 1.570e-15 Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 1 MTPAQQQQFMQYLETQQRKDSLAMYNNLVFKCFEDCSRSFRSRRLDDSETKCINVCAEKFIKLTGRVARRFQDLQQ 228
+ P QQQ+ M++ E +Q ++SL +YN +V CF +C +SFRS++L+D E C+N+CAEKF+K T RV RF + QQ
Sbjct: 7 LPPHQQQELMKHFEQKQLEESLMLYNRVVATCFNECVQSFRSKKLEDKEENCMNLCAEKFLKHTQRVGVRFAEAQQ 82
BLAST of mRNA_H-elongata_contig6840.14472.1 vs. uniprot
Match: W4FPA0_9STRA (zf-Tim10_DDP domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FPA0_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 2.520e-13 Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query: 1 MTPAQQQQFMQYLETQQRKDSLAMYNNLVFKCFEDCSRSFRSRRLDDSETKCINVCAEKFIKLTGRVARRFQDLQQ 228
+ P QQQ+ M++ E +Q ++SL +YN +V CF +C +SFRS++L+D E C+N+CAEKF+K T RV RF + QQ
Sbjct: 7 LPPHQQQELMKHFEQKQLEESLMLYNRVVATCFNECVQSFRSKKLEDKEVNCMNLCAEKFLKHTQRVGVRFAEAQQ 82
BLAST of mRNA_H-elongata_contig6840.14472.1 vs. uniprot
Match: A0A7S3BME1_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BME1_9EUKA) HSP 1 Score: 73.6 bits (179), Expect = 5.720e-13 Identity = 35/62 (56.45%), Postives = 43/62 (69.35%), Query Frame = 1
Query: 37 LETQQRKDSLAMYNNLVFKCFEDCSRSFRSRRLDDSETKCINVCAEKFIKLTGRVARRFQDL 222
LE Q KD+L M+N LV +CF +C FRS+ L E KCIN CAEKFIK +GRV +RF +L
Sbjct: 39 LEEMQMKDTLRMFNGLVERCFSECVNGFRSKALTAPEEKCINTCAEKFIKHSGRVGQRFGEL 100
BLAST of mRNA_H-elongata_contig6840.14472.1 vs. uniprot
Match: A0A388M117_CHABU (zf-Tim10_DDP domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388M117_CHABU) HSP 1 Score: 72.0 bits (175), Expect = 1.270e-12 Identity = 33/62 (53.23%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 37 LETQQRKDSLAMYNNLVFKCFEDCSRSFRSRRLDDSETKCINVCAEKFIKLTGRVARRFQDL 222
LET Q +DSL +YN LV +CF +C SFR + LD +E C+ C EKF+K TGRV+ RFQ++
Sbjct: 21 LETVQMRDSLRLYNTLVERCFNNCVDSFRRKTLDKTEETCVKRCVEKFLKHTGRVSLRFQEI 82
BLAST of mRNA_H-elongata_contig6840.14472.1 vs. uniprot
Match: A0A1E5RJ12_HANUV (Mitochondrial import inner membrane translocase subunit TIM9 n=3 Tax=Hanseniaspora TaxID=29832 RepID=A0A1E5RJ12_HANUV) HSP 1 Score: 70.9 bits (172), Expect = 3.090e-12 Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 1
Query: 16 QQQFMQYLETQQRKDSLAMYNNLVFKCFEDCSRSFRSRRLDDSETKCINVCAEKFIKLTGRVARRFQD 219
QQ+F + +E +Q KD + +Y+NLV KCF DC F S +L++ E CI+ CAEKF+K + RV +RFQ+
Sbjct: 9 QQEFQKIVEQKQMKDFMRLYSNLVEKCFSDCVEDFTSSKLNNRELTCISKCAEKFLKHSERVGKRFQE 76
BLAST of mRNA_H-elongata_contig6840.14472.1 vs. uniprot
Match: A0A7S3RAD0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3RAD0_DUNTE) HSP 1 Score: 68.6 bits (166), Expect = 4.440e-11 Identity = 31/61 (50.82%), Postives = 40/61 (65.57%), Query Frame = 1
Query: 37 LETQQRKDSLAMYNNLVFKCFEDCSRSFRSRRLDDSETKCINVCAEKFIKLTGRVARRFQD 219
LE Q +DSL MYNNLV +CF +CS RS+ L E +C+ C EKF+ +TGRV RF +
Sbjct: 27 LEHMQVRDSLKMYNNLVERCFRECSEDMRSKALSSKEEQCVVKCCEKFMNVTGRVGMRFSE 87
BLAST of mRNA_H-elongata_contig6840.14472.1 vs. uniprot
Match: A0A7S2CLT1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CLT1_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 1.180e-10 Identity = 32/68 (47.06%), Postives = 43/68 (63.24%), Query Frame = 1
Query: 22 QFMQYLETQQRKDSLAMYNNLVFKCFEDCSRSFRSRRLDDSETKCINVCAEKFIKLTGRVARRFQDLQ 225
+ +Q +E Q +S YN +V CF DC ++FRS L D E+KC+N CAEKFIKL R R+Q+ Q
Sbjct: 34 ELLQEIEKMQMHNSSKTYNQMVEHCFNDCIKTFRSSTLSDQESKCVNSCAEKFIKLGRRAGYRYQEHQ 101
BLAST of mRNA_H-elongata_contig6840.14472.1 vs. uniprot
Match: A0A836CES0_9STRA (zf-Tim10_DDP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CES0_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 5.630e-10 Identity = 30/75 (40.00%), Postives = 48/75 (64.00%), Query Frame = 1
Query: 1 MTPAQQQQFMQYLETQQRKDSLAMYNNLVFKCFEDCSRSFRSRRLDDSETKCINVCAEKFIKLTGRVARRFQDLQ 225
+T A+Q + M ++E +Q K+S+ YN +KCF C +F++++LD +ET CI C KF+KL+ R +R D Q
Sbjct: 5 LTEAEQAKLMGFMEFEQVKNSMKAYNQTAYKCFGQCVTTFKTKKLDATETACIENCTAKFLKLSQRTGQRMGDYQ 79
BLAST of mRNA_H-elongata_contig6840.14472.1 vs. uniprot
Match: M1VL90_CYAM1 (Mitochondrial intermembrane space complex subunit Tim9 n=1 Tax=Cyanidioschyzon merolae (strain NIES-3377 / 10D) TaxID=280699 RepID=M1VL90_CYAM1) HSP 1 Score: 62.8 bits (151), Expect = 5.460e-9 Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1
Query: 28 MQYLETQQRKDSLAMYNNLVFKCFEDCSRSFRSRRLDDSETKCINVCAEKFIKLTGRVARRF 213
M L+ Q +DS+ +YN LV+ CF +C SFRS +L+ E C+ CA+KF+KL R +RF
Sbjct: 17 MAVLQELQIQDSMRLYNELVYLCFNNCVDSFRSSKLEAKEEACVTKCAQKFLKLAARAGQRF 78 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6840.14472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig6840.14472.1 >prot_H-elongata_contig6840.14472.1 ID=prot_H-elongata_contig6840.14472.1|Name=mRNA_H-elongata_contig6840.14472.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp MTPAQQQQFMQYLETQQRKDSLAMYNNLVFKCFEDCSRSFRSRRLDDSETback to top mRNA from alignment at H-elongata_contig6840:1124..3114+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig6840.14472.1 ID=mRNA_H-elongata_contig6840.14472.1|Name=mRNA_H-elongata_contig6840.14472.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1991bp|location=Sequence derived from alignment at H-elongata_contig6840:1124..3114+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig6840:1124..3114+ >mRNA_H-elongata_contig6840.14472.1 ID=mRNA_H-elongata_contig6840.14472.1|Name=mRNA_H-elongata_contig6840.14472.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig6840:1124..3114+ (Himanthalia elongata Himel1 dioecious)back to top |