mRNA_H-elongata_contig68394.14469.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68394.14469.1
Unique NamemRNA_H-elongata_contig68394.14469.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68394.14469.1 vs. uniprot
Match: A0A6H5JZ77_9PHAE (Glyco_hydro_114 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ77_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.920e-16
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1
Query:   13 VSQAKQITYNKWFADTVHDNGMLVGLKNAVELVPDLVDSFDFAINEQCNVYDEC 174
            VS+A+QI YN WFAD VH  GM VGLKNAVELVP LV+ FDFA+NE+C+ ++EC
Sbjct:  270 VSEAEQIEYNSWFADIVHAYGMGVGLKNAVELVPILVNKFDFALNEECHEWNEC 323          
BLAST of mRNA_H-elongata_contig68394.14469.1 vs. uniprot
Match: A0A2R5G117_9STRA (Glyco_hydro_114 domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G117_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 3.480e-15
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1
Query:    1 GFKKVSQA--KQITYNKWFADTVHDNGMLVGLKNAVELVPDLVDSFDFAINEQCNVYDECD 177
            G KK+ +A   Q+ YN+W A   H  GM +GLKNA+ ++PDLV  FDFAINEQC+ YDECD
Sbjct:  136 GIKKLKKAYKAQLKYNRWLAAEAHSLGMAIGLKNALTMIPDLVSHFDFAINEQCHQYDECD 196          
BLAST of mRNA_H-elongata_contig68394.14469.1 vs. uniprot
Match: A0A0D2MHL9_9CHLO (Uncharacterized protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MHL9_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 1.640e-14
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   13 VSQAKQITYNKWFADTVHDNGMLVGLKNAVELVPDLVDSFDFAINEQCNVYDEC 174
            ++ A Q+ YNKW A T HD G+ +GLKNA++L+PDLV  +DF +NEQC V++EC
Sbjct:  166 LTAADQLAYNKWLAATAHDLGLAIGLKNAIDLIPDLVSDYDFFVNEQCVVFNEC 219          
BLAST of mRNA_H-elongata_contig68394.14469.1 vs. uniprot
Match: A0A0A1YML3_9PSED (Glyco_hydro_114 domain-containing protein n=3 Tax=Pseudomonas TaxID=286 RepID=A0A0A1YML3_9PSED)

HSP 1 Score: 72.4 bits (176), Expect = 4.390e-14
Identity = 31/56 (55.36%), Postives = 39/56 (69.64%), Query Frame = 1
Query:   10 KVSQAKQITYNKWFADTVHDNGMLVGLKNAVELVPDLVDSFDFAINEQCNVYDECD 177
            ++S A Q+ +N+W A   H   + VGLKNAVEL+P LVD FDFA+NE C  Y ECD
Sbjct:  115 QLSAADQVDFNRWLAREAHQRDLAVGLKNAVELLPQLVDDFDFALNESCYAYQECD 170          
BLAST of mRNA_H-elongata_contig68394.14469.1 vs. uniprot
Match: A0A1G3E0C0_9GAMM (Glyco_hydro_114 domain-containing protein n=1 Tax=Pseudomonadales bacterium RIFCSPHIGHO2_02_FULL_60_43 TaxID=1802005 RepID=A0A1G3E0C0_9GAMM)

HSP 1 Score: 72.0 bits (175), Expect = 6.950e-14
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   13 VSQAKQITYNKWFADTVHDNGMLVGLKNAVELVPDLVDSFDFAINEQCNVYDECD 177
            +S+A QI YN+W +   H++ + + LKNAVEL+P LVD FDFA+NE C  Y EC+
Sbjct:  124 LSEANQIDYNRWLSQQAHEHNLAIALKNAVELIPALVDDFDFALNESCYAYKECE 178          
BLAST of mRNA_H-elongata_contig68394.14469.1 vs. uniprot
Match: A0A1I3G4E6_9PSED (Glyco_hydro_114 domain-containing protein n=2 Tax=Pseudomonas guineae TaxID=425504 RepID=A0A1I3G4E6_9PSED)

HSP 1 Score: 72.0 bits (175), Expect = 9.840e-14
Identity = 30/56 (53.57%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   10 KVSQAKQITYNKWFADTVHDNGMLVGLKNAVELVPDLVDSFDFAINEQCNVYDECD 177
            ++S+A QI YN+W +   H + + + LKNAVEL+P LVD FDFA+NE C  Y ECD
Sbjct:  149 QLSKADQIDYNRWLSQQAHSHDLAIALKNAVELIPALVDDFDFALNESCYAYKECD 204          
BLAST of mRNA_H-elongata_contig68394.14469.1 vs. uniprot
Match: A0A654BBT4_9PSED (Glyco_hydro_114 domain-containing protein n=4 Tax=Pseudomonas TaxID=286 RepID=A0A654BBT4_9PSED)

HSP 1 Score: 72.0 bits (175), Expect = 9.840e-14
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   13 VSQAKQITYNKWFADTVHDNGMLVGLKNAVELVPDLVDSFDFAINEQCNVYDECD 177
            +S+A QI YN+W +   H++ + + LKNAVEL+P LVD FDFA+NE C  Y EC+
Sbjct:  150 LSEANQIDYNRWLSQQAHEHNLAIALKNAVELIPALVDDFDFALNESCYAYKECE 204          
BLAST of mRNA_H-elongata_contig68394.14469.1 vs. uniprot
Match: A0A542HKC4_9ACTN (Glyco_hydro_114 domain-containing protein n=4 Tax=Streptomyces TaxID=1883 RepID=A0A542HKC4_9ACTN)

HSP 1 Score: 71.6 bits (174), Expect = 1.700e-13
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   13 VSQAKQITYNKWFADTVHDNGMLVGLKNAVELVPDLVDSFDFAINEQCNVYDEC 174
            V  A Q+ YN+  A+  HD GM VGLKN ++ +P+LVD FDFA+NEQC  YDEC
Sbjct:  170 VEAADQLRYNRLIAELAHDRGMSVGLKNDLDQIPELVDDFDFAVNEQCAQYDEC 223          
BLAST of mRNA_H-elongata_contig68394.14469.1 vs. uniprot
Match: A0A1Y3N1U1_PIRSE (Alpha-galactosidase (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3N1U1_PIRSE)

HSP 1 Score: 70.5 bits (171), Expect = 1.790e-13
Identity = 30/52 (57.69%), Postives = 37/52 (71.15%), Query Frame = 1
Query:   22 AKQITYNKWFADTVHDNGMLVGLKNAVELVPDLVDSFDFAINEQCNVYDECD 177
            A Q+ Y+KW A   HD  M  G KN++EL+ DL D FDFAINE+CN Y+ECD
Sbjct:  138 ADQLKYDKWLAKEAHDRNMAAGFKNSIELLDDLKDIFDFAINEECNEYNECD 189          
BLAST of mRNA_H-elongata_contig68394.14469.1 vs. uniprot
Match: UPI0004C9E907 (endo alpha-1,4 polygalactosaminidase n=1 Tax=Streptomyces exfoliatus TaxID=1905 RepID=UPI0004C9E907)

HSP 1 Score: 69.3 bits (168), Expect = 2.960e-13
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1
Query:   13 VSQAKQITYNKWFADTVHDNGMLVGLKNAVELVPDLVDSFDFAINEQCNVYDECD 177
            ++ A Q+ YN+  AD  H +GM VGLKN +  +P+LVD FDFA+NEQC  Y+ECD
Sbjct:  103 LTAAHQLRYNRLIADLAHRHGMAVGLKNDLPQIPELVDDFDFAVNEQCAQYEECD 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68394.14469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ77_9PHAE2.920e-1668.52Glyco_hydro_114 domain-containing protein n=2 Tax=... [more]
A0A2R5G117_9STRA3.480e-1557.38Glyco_hydro_114 domain-containing protein n=1 Tax=... [more]
A0A0D2MHL9_9CHLO1.640e-1455.56Uncharacterized protein n=1 Tax=Monoraphidium negl... [more]
A0A0A1YML3_9PSED4.390e-1455.36Glyco_hydro_114 domain-containing protein n=3 Tax=... [more]
A0A1G3E0C0_9GAMM6.950e-1452.73Glyco_hydro_114 domain-containing protein n=1 Tax=... [more]
A0A1I3G4E6_9PSED9.840e-1453.57Glyco_hydro_114 domain-containing protein n=2 Tax=... [more]
A0A654BBT4_9PSED9.840e-1452.73Glyco_hydro_114 domain-containing protein n=4 Tax=... [more]
A0A542HKC4_9ACTN1.700e-1357.41Glyco_hydro_114 domain-containing protein n=4 Tax=... [more]
A0A1Y3N1U1_PIRSE1.790e-1357.69Alpha-galactosidase (Fragment) n=1 Tax=Piromyces s... [more]
UPI0004C9E9072.960e-1354.55endo alpha-1,4 polygalactosaminidase n=1 Tax=Strep... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68394contigH-elongata_contig68394:2353..3004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.4e-12
Seed eggNOG ortholog2880.D7FPZ5
EggNOG free text desc.Endo alpha-1,4 polygalactosaminidase
EggNOG OGs2RCTR@2759,COG3868@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlycoside hydrolase superfamily
Ec32 orthologEc-12_002620.1
Exons2
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931077.5971298-CDS-H-elongata_contig68394:2352..24121622931077.5971298-CDS-H-elongata_contig68394:2352..2412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68394 2353..2412 +
1691679688.7194772-CDS-H-elongata_contig68394:2352..24121691679688.7194772-CDS-H-elongata_contig68394:2352..2412Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68394 2353..2412 +
1622931077.6142828-CDS-H-elongata_contig68394:2887..30041622931077.6142828-CDS-H-elongata_contig68394:2887..3004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68394 2888..3004 +
1691679688.73603-CDS-H-elongata_contig68394:2887..30041691679688.73603-CDS-H-elongata_contig68394:2887..3004Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68394 2888..3004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68394.14469.1prot_H-elongata_contig68394.14469.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68394 2353..3004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68394.14469.1

>prot_H-elongata_contig68394.14469.1 ID=prot_H-elongata_contig68394.14469.1|Name=mRNA_H-elongata_contig68394.14469.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
GFKKVSQAKQITYNKWFADTVHDNGMLVGLKNAVELVPDLVDSFDFAINE
QCNVYDECD
back to top

mRNA from alignment at H-elongata_contig68394:2353..3004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68394.14469.1 ID=mRNA_H-elongata_contig68394.14469.1|Name=mRNA_H-elongata_contig68394.14469.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=652bp|location=Sequence derived from alignment at H-elongata_contig68394:2353..3004+ (Himanthalia elongata Himel1 dioecious)
GGCTTCAAAAAAGTCAGTCAAGCCAAACAGATCACCTACAACAAGTGGTT CGCGGATACGGTGCGTCGAAGTGATCGACATCGAAGCTAATAGAGTTCGC GGTATAACATCCCGAGTAATATGGCCGCCTACATGTGTACCTACACTCAT GTACAGCATTATCGGACGTGTTGATGCTAGGCGCACGTCTTCGCCGTAGG CACGCACCGGTGATGAGCCTTTAAAAGTCGGAACATGTCCATGTGTGTAA GAAGGAAACCCGATAGCTCGATGTGTCGACGAGAGCTGCATACACTGTGG TTAATCAGTTCGGGCGGCAAAATCAATATTATTTAAAGTATCGATTGCTC TACGTCCACCCCAAATAACTTGTACATTAGTCAGCCCCCTTATATAGGGC GCGGTTCCAGTTTTGCTTGTGATCAAACTCCGAGTGGCATCTTCTCTGGA GACCACACATCGATGAATTAAATCGCTGACTTCTCCCTCGTCTTCCATTC CTCGCAAATTGATGCCGCGTCGCGGTTGTATTTAGGTTCACGACAATGGC ATGCTAGTGGGCCTAAAGAATGCCGTTGAACTCGTCCCCGATCTGGTCGA CTCCTTCGATTTTGCAATCAACGAGCAATGCAACGTGTACGACGAATGCG AC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig68394:2353..3004+

>mRNA_H-elongata_contig68394.14469.1 ID=mRNA_H-elongata_contig68394.14469.1|Name=mRNA_H-elongata_contig68394.14469.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig68394:2353..3004+ (Himanthalia elongata Himel1 dioecious)
GGCTTCAAAAAAGTCAGTCAAGCCAAACAGATCACCTACAACAAGTGGTT
CGCGGATACGGGCTTCAAAAAAGTCAGTCAAGCCAAACAGATCACCTACA
ACAAGTGGTTCGCGGATACGGTTCACGACAATGGCATGCTAGTGGGCCTA
AAGAATGCCGTTGAACTCGTCCCCGATCTGGTCGACTCCTTCGATTTTGC
AATCAACGAGCAATGCAACGTGTACGACGAATGCGACGTTCACGACAATG
GCATGCTAGTGGGCCTAAAGAATGCCGTTGAACTCGTCCCCGATCTGGTC
GACTCCTTCGATTTTGCAATCAACGAGCAATGCAACGTGTACGACGAATG
CGAC
back to top