mRNA_H-elongata_contig68334.14461.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68334.14461.1
Unique NamemRNA_H-elongata_contig68334.14461.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68334.14461.1 vs. uniprot
Match: A0A6H5L981_9PHAE (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L981_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 4.450e-6
Identity = 48/125 (38.40%), Postives = 60/125 (48.00%), Query Frame = 2 
Query:  278 MRSLSARRALAFLLLQAHAAAFSSPPPFSGNRRPRGPPFPPTASSKTXXXXSKRKPPPLALGRRIPSPLGRVPPFPFSNYRSSSSRESRPPRQDLPLTILQGWFDGWGPGDGRTRGNEGKGERIG 652
            M++  ARRAL  LLLQA  AAFS   P  G RRPR    P  A+       S   PPP A  R  P     +         +S  R+    +  +PLT+LQGWFDG G GD     ++G G+  G
Sbjct:    1 MKASCARRALVLLLLQARVAAFSGRSP--GQRRPRVQVRPSAAAVVAASRASH--PPPSAFRRARPGQARSILGGGRCGGGNSGLRDGNSRQVHIPLTVLQGWFDGLGAGDSSGATDKGGGKSGG 121
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68334.14461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L981_9PHAE4.450e-638.40PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68334contigH-elongata_contig68334:1225..3165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons2
Model size690
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68334.14461.1prot_H-elongata_contig68334.14461.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68334 1502..3165 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.7687912-UTR-H-elongata_contig68334:1224..15011622931076.7687912-UTR-H-elongata_contig68334:1224..1501Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68334 1225..1501 +
1691679688.3106456-UTR-H-elongata_contig68334:1224..15011691679688.3106456-UTR-H-elongata_contig68334:1224..1501Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68334 1225..1501 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.7864866-CDS-H-elongata_contig68334:1501..15901622931076.7864866-CDS-H-elongata_contig68334:1501..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68334 1502..1590 +
1691679688.3192728-CDS-H-elongata_contig68334:1501..15901691679688.3192728-CDS-H-elongata_contig68334:1501..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68334 1502..1590 +
1622931076.8036036-CDS-H-elongata_contig68334:2843..31651622931076.8036036-CDS-H-elongata_contig68334:2843..3165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68334 2844..3165 +
1691679688.3277657-CDS-H-elongata_contig68334:2843..31651691679688.3277657-CDS-H-elongata_contig68334:2843..3165Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68334 2844..3165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68334.14461.1

>prot_H-elongata_contig68334.14461.1 ID=prot_H-elongata_contig68334.14461.1|Name=mRNA_H-elongata_contig68334.14461.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=137bp
MRSLSARRALAFLLLQAHAAAFSSPPPFSGNRRPRGPPFPPTASSKTPPF
PSKRKPPPLALGRRIPSPLGRVPPFPFSNYRSSSSRESRPPRQDLPLTIL
QGWFDGWGPGDGRTRGNEGKGERIGDKRGKSSSKKDD
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mRNA from alignment at H-elongata_contig68334:1225..3165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68334.14461.1 ID=mRNA_H-elongata_contig68334.14461.1|Name=mRNA_H-elongata_contig68334.14461.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1941bp|location=Sequence derived from alignment at H-elongata_contig68334:1225..3165+ (Himanthalia elongata Himel1 dioecious)
CTGGCACCAGCGCAGCCCGGAGCACCCGCGACGGGCGTCAGAGGTCCTGG
ATCGCTGGCACGATAGCCCTGTCATCTCTAGAGTTTCAGCCTCACTGGCC
TGAGGAGCCAGTCTTAGATTGGAGGCCGCCATTAGTTGGGTTTACTCATC
CGCAGTCCCTGCATACGCATCTGAGCTTCCAGCAGTAGTCTAGTCCTAAG
TATTCGATAATCTCGTGTAGTCCTTGAGGAGTCTGAAACACCACAGGATA
CGACTGATAGGCATTGCTGTCGAGGTTATGAGATCCCTCTCTGCTCGGCG
AGCCCTGGCGTTTCTCCTGCTGCAAGCGCATGCTGCAGCATTCTCCAGCC
CCCCCCCGTTCAGCGGGTGAGTTTCGAATTTTGTTTTGAGTAATTTCGTA
ATTTCTAATTTCCAACGTTCTTCGATCGCGAAGGCTCCATGAGCAGTAAG
TACATGTACCTCATACCTCGACATGATAATGTATATTGCGCGTTCCTCCA
CCATCTGCCAGCGGGGGTCTCTGAGTGAAACCCCATTCATCAGAAGAAGC
AACAGCTGATTTACTGGCGGTAACTGTTTTGTAGTCAGTGCACCTGCCAA
AAGTTCCTGGAATCAATCTCGTGTTCATGTTACCCGGCGTTGTACCTCAA
CTACGATCAGTGCTCGTGAGTTCTCCCGCTCGTGCTCCGAACGCACACGA
AATGCAACAGAGAGAAACTCCGTGGTGACAGCATCGCCGTGGCCTTGGAC
CGGTAGGATTCCAGAATCACACGAAGGCGTCTCAGTCATGTTTTTTTCCA
CGATATCGGTATCGAAGCTTGATCCATCGAAGTTTGATCCATCGAAACTT
GATCCATGAGCGGCTCAATGATCATATATACGCTCGCTCCCGCGGTGATA
GCCAAGCGACCGGCATCCTCTTAAGATAGGGATGGCGATCGGGGGTGTGC
TTCAGAGTCTGTGTCCCCCCTCCCGAGAAACGCCAACGGAGTTCCACGAA
AACGAGCAAGCTGCATTTCGACAGGTTCCGCGGTTGGACCACTGCTACAG
TTGAATACTGTATAAAATAGTAAAGTAGAGCCTCACCGTCTCATTGGTCT
CCTGATGAAAACAGCAGGTTTCCTTGCGTGTGATTTGAGGAGCACTGTCG
TTGCACTTCAGAGGGGGGCGGGGGCGTTGTGAAATCCAAGAGAAATAGGG
TTCTTATGGGCGTGAAGCCAGCAGCGAGGAATGAAGCTATGAGCGCCCTC
CGCAACTTTTAAACCGTGCGGTACGAATGCATATTTTCCCTGACATAAAA
GCTACACGACAGCAGGGCGATAGTTCCCCCGCTAGCAACGCCTTCGTGCC
AAGCAAGATAACCTCACCCAATGAAGAGCATAAATCTAAGGGATGGTGAC
GCTATCGAGCAATGACGCTGTTTACCAGCATGAACGTCCCCAACAAACTC
GTATCTAGATTATTTAAGTCTACGTCGGTAGTTGGTGCGAGCGAAAAAGG
TGCAGTGGCGCAAAGCAGTGCTGCGCAGCTGAAGCACGTCCTCCGAATCC
TTAACGCCCCTTTACCCCCCTCCCCAAACATCCCTCATCCACCGCGTGTT
TCAACGTTGTGTACGACAGAAACAGGCGTCCGCGAGGGCCACCATTCCCC
CCGACCGCGTCATCAAAAACACCTCCTTTTCCATCGAAGCGAAAGCCACC
ACCCCTCGCGCTAGGCCGGCGTATTCCGAGCCCGCTTGGGCGTGTTCCCC
CTTTTCCTTTCAGCAACTACAGGAGCAGCAGCAGCAGGGAGAGCCGACCC
CCACGGCAAGATCTGCCGTTGACTATCCTCCAAGGGTGGTTCGATGGTTG
GGGTCCAGGAGATGGACGAACGAGGGGCAATGAAGGAAAGGGTGAAAGGA
TTGGGGACAAGCGTGGTAAGTCCTCGTCAAAGAAGGACGAC
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Coding sequence (CDS) from alignment at H-elongata_contig68334:1225..3165+

>mRNA_H-elongata_contig68334.14461.1 ID=mRNA_H-elongata_contig68334.14461.1|Name=mRNA_H-elongata_contig68334.14461.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=822bp|location=Sequence derived from alignment at H-elongata_contig68334:1225..3165+ (Himanthalia elongata Himel1 dioecious)
ATGAGATCCCTCTCTGCTCGGCGAGCCCTGGCGTTTCTCCTGCTGCAAGC
GCATGCTGCAGCATTCTCCAGCCCCCCCCCGTTCAGCGGATGAGATCCCT
CTCTGCTCGGCGAGCCCTGGCGTTTCTCCTGCTGCAAGCGCATGCTGCAG
CATTCTCCAGCCCCCCCCCGTTCAGCGGAAACAGGCGTCCGCGAGGGCCA
CCATTCCCCCCGACCGCGTCATCAAAAACACCTCCTTTTCCATCGAAGCG
AAAGCCACCACCCCTCGCGCTAGGCCGGCGTATTCCGAGCCCGCTTGGGC
GTGTTCCCCCTTTTCCTTTCAGCAACTACAGGAGCAGCAGCAGCAGGGAG
AGCCGACCCCCACGGCAAGATCTGCCGTTGACTATCCTCCAAGGGTGGTT
CGATGGTTGGGGTCCAGGAGATGGACGAACGAGGGGCAATGAAGGAAAGG
GTGAAAGGATTGGGGACAAGCGTGGTAAGTCCTCGTCAAAGAAGGACGAC
AAACAGGCGTCCGCGAGGGCCACCATTCCCCCCGACCGCGTCATCAAAAA
CACCTCCTTTTCCATCGAAGCGAAAGCCACCACCCCTCGCGCTAGGCCGG
CGTATTCCGAGCCCGCTTGGGCGTGTTCCCCCTTTTCCTTTCAGCAACTA
CAGGAGCAGCAGCAGCAGGGAGAGCCGACCCCCACGGCAAGATCTGCCGT
TGACTATCCTCCAAGGGTGGTTCGATGGTTGGGGTCCAGGAGATGGACGA
ACGAGGGGCAATGAAGGAAAGGGTGAAAGGATTGGGGACAAGCGTGGTAA
GTCCTCGTCAAAGAAGGACGAC
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