mRNA_H-elongata_contig68299.14456.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig68299.14456.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN) HSP 1 Score: 134 bits (337), Expect = 5.600e-34 Identity = 63/125 (50.40%), Postives = 86/125 (68.80%), Query Frame = 1
Query: 1 MENLFEEATVKAVIKKANPQSAAGPSGLRYNHLKAALCNELVEDLAAFATLVVSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLRGVTGTVFCRRYGRKLADYFQPWGQYGVAVSGGVEVMA 375
+E F TV A I++ NPQ + GPSGLR++ L+++L EL E +A +++ LP FW LHTSANLSA+G K RP+A GD+ R + G V CR+YG LA++F+P GQYGVAV GG E++A
Sbjct: 1154 VEEPFATETVTATIRRGNPQGSPGPSGLRFSLLQSSLTPELCEAIAKLCSVIFDGSHLPDSFWQLHTSANLSAIGDKCRPIAVGDLFRRIVGGVICRQYGPSLAEHFEPQGQYGVAVPGGTELLA 1278
BLAST of mRNA_H-elongata_contig68299.14456.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE) HSP 1 Score: 110 bits (276), Expect = 1.990e-26 Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 13 FEEATVKAVIKKANPQSAAGPSGLRYNHLKAA-LCNELVEDLAAFATLVVS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRGVTGTVFCRRYGRKLADYFQPWGQYGVAVSGGVEVMA 375
FE +K +KKANPQSA GP GLR+++L+A + + E LA F+ V LP FW LHTSANLSALG+K RP+A G VLR + FCR+Y +A+ F+ Q+G V GGVE++A
Sbjct: 120 FEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVA 242
BLAST of mRNA_H-elongata_contig68299.14456.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE) HSP 1 Score: 112 bits (279), Expect = 3.570e-26 Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 13 FEEATVKAVIKKANPQSAAGPSGLRYNHLKAA-LCNELVEDLAAFATLVVS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRGVTGTVFCRRYGRKLADYFQPWGQYGVAVSGGVEVMA 375
FE +K +KKANPQSA GP GLR+++L+A + + E LA F+ V LP FW LHTSANLSALG+K RP+A G VLR + FCR+Y +A+ F+ Q+G V GGVE++A
Sbjct: 120 FEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDSFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVA 242
BLAST of mRNA_H-elongata_contig68299.14456.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE) HSP 1 Score: 110 bits (276), Expect = 8.890e-26 Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 13 FEEATVKAVIKKANPQSAAGPSGLRYNHLKAA-LCNELVEDLAAFATLVVS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRGVTGTVFCRRYGRKLADYFQPWGQYGVAVSGGVEVMA 375
FE +K +KKANPQSA GP GLR+++L+A + + E LA F+ V LP FW LHTSANLSALG+K RP+A G VLR + FCR+Y +A+ F+ Q+G V GGVE++A
Sbjct: 120 FEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVA 242
BLAST of mRNA_H-elongata_contig68299.14456.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE) HSP 1 Score: 108 bits (271), Expect = 3.820e-25 Identity = 59/123 (47.97%), Postives = 78/123 (63.41%), Query Frame = 1
Query: 13 FEEATVKAVIKKANPQSAAGPSGLRYNHLKAA-LCNELVEDLAAFATLVVS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRGVTGTVFCRRYGRKLADYFQPWGQYGVAVSGGVEVMA 375
FE +K +KKANPQSA GP GLR+++L+A + + E LA F+ V LP FW LHTSANLSALG+K RP+A G VLR + FC +Y +A+ F+ Q+G V GGVE++A
Sbjct: 120 FEIKFIKQTVKKANPQSAPGPDGLRFSYLQAGGMSDFFTETLADFSFKVFYYGDELPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCHQYKGGIANIFEAANQFGGGVPGGVEIVA 242
BLAST of mRNA_H-elongata_contig68299.14456.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 1.100e-14 Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 109 LCNELVEDLAAFATLVVS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRGVTGTVFCRRYGRKLADYFQPWGQYGVAVSGGVEVMA 375
+ ++ E LA F+ V LP +FW TSA+LSALG+K RP+A G VLR + FCR+Y + +AD F+ Q+G V GGVE++A
Sbjct: 1 MSDDFSETLADFSYKVFYYGDELPDLFWGFQTSASLSALGEKKRPIAVGGVLRRIISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVA 90
BLAST of mRNA_H-elongata_contig68299.14456.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE) HSP 1 Score: 79.0 bits (193), Expect = 1.270e-14 Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 1
Query: 172 LPQVFWTLHTSANLSALGQKARPVACGDVLRGVTGTVFCRRYGRKLADYFQPWGQYGVAVSGGVEVMA 375
LP FW LHTSANLSALG+K RP+A G VLR + FCR+Y +A+ F+ Q+G V GGVE++A
Sbjct: 23 LPDFFWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFCRQYKGGIANIFEAANQFGGGVPGGVEIVA 90
BLAST of mRNA_H-elongata_contig68299.14456.1 vs. uniprot
Match: A0A6H5KQE6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE6_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 3.450e-13 Identity = 37/80 (46.25%), Postives = 49/80 (61.25%), Query Frame = 1
Query: 172 LPQVFWTLHTSANLSALGQKARPVACGDVLRGVTGTV------------FCRRYGRKLADYFQPWGQYGVAVSGGVEVMA 375
LP +FW LHTSA+LSALG+K RP+A G VLR + FCR+Y + +AD F+ Q+G V GGVE++A
Sbjct: 23 LPDLFWGLHTSASLSALGEKKRPIAVGGVLRRIIXIXXXXXXXXXISGSFCRQYKQGIADIFEASNQFGGGVPGGVEIVA 102
BLAST of mRNA_H-elongata_contig68299.14456.1 vs. uniprot
Match: A0A6H5KR59_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR59_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.740e-12 Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 1
Query: 4 ENLFEEATVKAVIKKANPQSAAGPSGLRYNHLKAALCNELVEDLAAFAT------LVVSSRVLPQVFWTLHTSANLSALGQKARPVACGDVLRGVTGTVFCRRYGRKLADYFQPWGQYGVAVSGGVEVMAL 378
E F+ + VI + + S AG G R++HLK+ + N++ + + A L+ P FWTL ++L ALG+K RPV G R + R + KL + F+ Q+GVAV+GGVE +A+
Sbjct: 87 ETEFDPQVLLQVINRRSSNSGAGNDGQRFSHLKSIVNNKIGREEFSNAMSPLWRRLINDPNAFPPEFWTLWKQSSLIALGEKCRPVCIGMTWRRLIAAGTVREWKPKLEEIFREADQFGVAVAGGVEQVAM 217
BLAST of mRNA_H-elongata_contig68299.14456.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 2.020e-12 Identity = 40/90 (44.44%), Postives = 53/90 (58.89%), Query Frame = 1
Query: 109 LCNELVEDLAAFATLVVS-SRVLPQVFWTLHTSANLSALGQKARPVACGDVLRGVTGTVFCRRYGRKLADYFQPWGQYGVAVSGGVEVMA 375
+ + E LA F+ V LP W LHTSANLSALG+K RP+A G VLR + F R+Y +A+ F+ Q+G V GGVE++A
Sbjct: 1 MSDSFTETLADFSFKVFYYGDELPDFLWNLHTSANLSALGEKKRPIAVGGVLRRIISGSFYRQYKGGIANIFEAANQFGGGVPGGVEIVA 90 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68299.14456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig68299.14456.1 >prot_H-elongata_contig68299.14456.1 ID=prot_H-elongata_contig68299.14456.1|Name=mRNA_H-elongata_contig68299.14456.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp MENLFEEATVKAVIKKANPQSAAGPSGLRYNHLKAALCNELVEDLAAFATback to top mRNA from alignment at H-elongata_contig68299:2599..2976- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig68299.14456.1 ID=mRNA_H-elongata_contig68299.14456.1|Name=mRNA_H-elongata_contig68299.14456.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=378bp|location=Sequence derived from alignment at H-elongata_contig68299:2599..2976- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig68299:2599..2976- >mRNA_H-elongata_contig68299.14456.1 ID=mRNA_H-elongata_contig68299.14456.1|Name=mRNA_H-elongata_contig68299.14456.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig68299:2599..2976- (Himanthalia elongata Himel1 dioecious)back to top |