mRNA_H-elongata_contig68283.14455.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68283.14455.1
Unique NamemRNA_H-elongata_contig68283.14455.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig68283.14455.1 vs. uniprot
Match: D7FQ07_ECTSI (Dolichol-phosphate mannosyltransferase subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ07_ECTSI)

HSP 1 Score: 301 bits (772), Expect = 3.040e-101
Identity = 151/174 (86.78%), Postives = 161/174 (92.53%), Query Frame = 1 
Query:   16 NLDFEIVVVEDSSPDGTLEVAQKLQELYGETVVRILSRPGKMGLGTAYMDGLRMTTGTHVILMDADMSHHPKFIPHLVRKMEEGQHDVVSGTRYGLGGGVAGWDLFRKLVSRGANFLAHTLLSPGVTDLTGSYRLFTKPVLEDIMKDVTSKGYVFQMEVTVRAKLKGHNGGEVP 537
            +LDFEIVVV+DSSPDGTL VA+ LQ LYG+ VVRILSRPGKMGLGTAYMDGLRM TGTHVILMDADMSHHPK+IP LV+KMEEG HDVVSGTRYGLGGGVAGWDLFRKL SR ANFLAHTLLSPGVTDLTGSYRLFTK  LEDIMK+VTSKGYVFQMEV VRA+LKG++ GEVP
Sbjct:   76 DLDFEIVVVDDSSPDGTLAVAKMLQGLYGKEVVRILSRPGKMGLGTAYMDGLRMITGTHVILMDADMSHHPKYIPDLVQKMEEGDHDVVSGTRYGLGGGVAGWDLFRKLTSRVANFLAHTLLSPGVTDLTGSYRLFTKAALEDIMKEVTSKGYVFQMEVIVRARLKGYSVGEVP 249
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BLAST of mRNA_H-elongata_contig68283.14455.1 vs. uniprot
Match: A0A835Z8R0_9STRA (Dolichol-phosphate mannosyltransferase subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8R0_9STRA)

HSP 1 Score: 241 bits (616), Expect = 3.890e-78
Identity = 118/177 (66.67%), Postives = 141/177 (79.66%), Query Frame = 1 
Query:    7 TSSNLDFEIVVVEDSSPDGTLEVAQKLQELYGETVVRILSRPGKMGLGTAYMDGLRMTTGTHVILMDADMSHHPKFIPHLVRKMEEGQHDVVSGTRYGLGGGVAGWDLFRKLVSRGANFLAHTLLSPGVTDLTGSYRLFTKPVLEDIMKDVTSKGYVFQMEVTVRAKLKGHNGGEVP 537
            T  N+DFEI++V+DSSPDGTL+VA+KLQ+LYGE  +RI SRPGK+GLG+AYMDGL   +GTH+ILMDAD+SHHPKFIP  +        DVV+GTRY  GGGV+GWDL RKL SRGANFLA  LL PGV+DLTGS+RL+ K VL+D+M+ V SKGYVFQMEV VR K  G+   EVP
Sbjct:   31 TQHNIDFEILIVDDSSPDGTLDVARKLQQLYGEDAIRIHSRPGKLGLGSAYMDGLERVSGTHIILMDADLSHHPKFIPQFIAAQAASGCDVVTGTRYRGGGGVSGWDLRRKLTSRGANFLASELLRPGVSDLTGSFRLYRKEVLQDVMRHVKSKGYVFQMEVIVRCKCLGYTVAEVP 207
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BLAST of mRNA_H-elongata_contig68283.14455.1 vs. uniprot
Match: W7U3K0_9STRA (Dolichol-phosphate mannosyltransferase subunit 1 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3K0_9STRA)

HSP 1 Score: 230 bits (586), Expect = 2.490e-73
Identity = 111/177 (62.71%), Postives = 139/177 (78.53%), Query Frame = 1 
Query:    7 TSSNLDFEIVVVEDSSPDGTLEVAQKLQELYGETVVRILSRPGKMGLGTAYMDGLRMTTGTHVILMDADMSHHPKFIPHLVRKMEEGQHDVVSGTRYGLGGGVAGWDLFRKLVSRGANFLAHTLLSPGVTDLTGSYRLFTKPVLEDIMKDVTSKGYVFQMEVTVRAKLKGHNGGEVP 537
            T S++ +E++++ED+SPD TL+VA+KLQELYG  V++I  RPGK+GLG+AY+DGL +     V+LMDAD+SHHPKFIP L RK +EG  DVV+GTRY +GGGV+GWDL RKL+SRGANFLA  LL PGV+DLTGS+RL+ K  L  +M  V SKGYVFQMEV VRA+  G    EVP
Sbjct:   49 TESHISYEVIIIEDNSPDNTLQVAEKLQELYGPQVIQIHQRPGKLGLGSAYVDGLALARADRVVLMDADLSHHPKFIPELFRKQQEGDFDVVTGTRYAMGGGVSGWDLRRKLISRGANFLAAFLLQPGVSDLTGSFRLYRKSALAAVMGRVRSKGYVFQMEVIVRARQLGLRIAEVP 225
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BLAST of mRNA_H-elongata_contig68283.14455.1 vs. uniprot
Match: A0A2C6L837_9APIC (Dolichol-phosphate mannosyltransferase subunit 1 n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6L837_9APIC)

HSP 1 Score: 226 bits (576), Expect = 5.410e-72
Identity = 112/180 (62.22%), Postives = 143/180 (79.44%), Query Frame = 1 
Query:   19 LDFEIVVVEDSSPDGTLEVAQKLQELY-GETVV------RILSRPGKMGLGTAYMDGLRMTTGTHVILMDADMSHHPKFIPHLVRKMEEGQHDVVSGTRYGLGGGVAGWDLFRKLVSRGANFLAHTLLSPGVTDLTGSYRLFTKPVLEDIMKDVTSKGYVFQMEVTVRAKLKGHNGGEVP 537
            L+FEI+VV+D+SPDGT    ++LQ ++ GE +V       +L RPGK+GLG+AYMDGL+ TTG  +ILMDAD SHHP++IP  +RK EE  +DV++G+RY  GGGV GWD  R L+SRGANFLA TLL+PGV+DLTGS+RLF +PVLED+MK +TSKGYVFQMEV VRA+  G++ GEVP
Sbjct:   33 LNFEILVVDDNSPDGTAATYRRLQRVFRGEKLVCFILWLLLLQRPGKLGLGSAYMDGLKHTTGDFIILMDADFSHHPRYIPEFIRKQEEADYDVITGSRYIEGGGVCGWDFKRILISRGANFLAQTLLNPGVSDLTGSFRLFKRPVLEDLMKRITSKGYVFQMEVAVRARSLGYSIGEVP 212
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BLAST of mRNA_H-elongata_contig68283.14455.1 vs. uniprot
Match: DPM1_DICDI (Dolichol-phosphate mannosyltransferase subunit 1 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=DPM1_DICDI)

HSP 1 Score: 226 bits (576), Expect = 7.430e-72
Identity = 107/173 (61.85%), Postives = 141/173 (81.50%), Query Frame = 1 
Query:   19 LDFEIVVVEDSSPDGTLEVAQKLQELYGETVVRILSRPGKMGLGTAYMDGLRMTTGTHVILMDADMSHHPKFIPHLVRKMEEGQHDVVSGTRYGLGGGVAGWDLFRKLVSRGANFLAHTLLSPGVTDLTGSYRLFTKPVLEDIMKDVTSKGYVFQMEVTVRAKLKGHNGGEVP 537
            +D+E+V+VED+SPDGTLEVAQ+LQ++YGE  ++ILSRPGKMGLG+AYMDG++ +TG  VILMDAD+SHHPKFIP  + K ++   ++V+GTRY  GGGV GW+L+RKL SR AN++A  LL+PGV+DLTGS+RL+ K VLE ++    SKGYVFQ+E+ VRA   G+  GEVP
Sbjct:   49 IDYEVVIVEDNSPDGTLEVAQQLQKIYGEEKIKILSRPGKMGLGSAYMDGIKKSTGNWVILMDADLSHHPKFIPQFIEKQKKLNCEIVTGTRYQSGGGVFGWNLYRKLTSRVANYIASVLLTPGVSDLTGSFRLYRKDVLEKLITQNKSKGYVFQVEMMVRANQLGYQVGEVP 221
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BLAST of mRNA_H-elongata_contig68283.14455.1 vs. uniprot
Match: A0A2A9M7J9_9APIC (Dolichol-phosphate mannosyltransferase subunit 1 n=2 Tax=Sarcocystidae TaxID=5809 RepID=A0A2A9M7J9_9APIC)

HSP 1 Score: 223 bits (567), Expect = 1.000e-70
Identity = 107/174 (61.49%), Postives = 138/174 (79.31%), Query Frame = 1 
Query:   16 NLDFEIVVVEDSSPDGTLEVAQKLQELYGETVVRILSRPGKMGLGTAYMDGLRMTTGTHVILMDADMSHHPKFIPHLVRKMEEGQHDVVSGTRYGLGGGVAGWDLFRKLVSRGANFLAHTLLSPGVTDLTGSYRLFTKPVLEDIMKDVTSKGYVFQMEVTVRAKLKGHNGGEVP 537
            N+DFEI++V+D+SPDGT    ++LQ ++    + +L RPGK+GLG+AYMDGL+ TTG  +ILMDAD SHHPKFIP  ++K +EG  DVV+G+RY  GGGV GWD  R ++SRGANFLA TLL+P V+DLTGS+RLF + V+EDIMK + SKGYVFQMEV VRA+  G++ GEVP
Sbjct:   32 NIDFEILLVDDNSPDGTASAYKELQRIFRGERLLLLERPGKLGLGSAYMDGLKKTTGDFIILMDADFSHHPKFIPEFIKKQKEGDFDVVTGSRYIPGGGVCGWDAKRIVISRGANFLAQTLLNPRVSDLTGSFRLFKRDVIEDIMKRMISKGYVFQMEVAVRARALGYSIGEVP 205
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BLAST of mRNA_H-elongata_contig68283.14455.1 vs. uniprot
Match: A0A151Z497_9MYCE (Dolichol-phosphate mannosyltransferase subunit 1 n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z497_9MYCE)

HSP 1 Score: 222 bits (565), Expect = 3.150e-70
Identity = 101/173 (58.38%), Postives = 138/173 (79.77%), Query Frame = 1 
Query:   19 LDFEIVVVEDSSPDGTLEVAQKLQELYGETVVRILSRPGKMGLGTAYMDGLRMTTGTHVILMDADMSHHPKFIPHLVRKMEEGQHDVVSGTRYGLGGGVAGWDLFRKLVSRGANFLAHTLLSPGVTDLTGSYRLFTKPVLEDIMKDVTSKGYVFQMEVTVRAKLKGHNGGEVP 537
            +D+E+++VED+SPDGT EVA++LQ +YG   ++IL RPGKMGLGTAY+DG++M+TG  +ILMDAD+SHHPKFIP  + K ++G +D+++GTRY  GGGV GWD +R+L SR AN++A   L+PGV+DLTGS+RL+ K VLE ++    +KGYVFQME+ VRAK   +  GEVP
Sbjct:   47 IDYEVIIVEDNSPDGTYEVAKQLQGIYGMDKIKILQRPGKMGLGTAYVDGMKMSTGNWIILMDADLSHHPKFIPQFISKQQKGNYDIITGTRYSSGGGVYGWDFYRRLTSRVANYIATVALNPGVSDLTGSFRLYRKEVLEKLISVNKAKGYVFQMEMMVRAKQFNYTIGEVP 219
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BLAST of mRNA_H-elongata_contig68283.14455.1 vs. uniprot
Match: F0VRN2_NEOCL (Dolichol-phosphate mannosyltransferase subunit 1 n=19 Tax=Sarcocystidae TaxID=5809 RepID=F0VRN2_NEOCL)

HSP 1 Score: 221 bits (562), Expect = 5.760e-70
Identity = 108/175 (61.71%), Postives = 136/175 (77.71%), Query Frame = 1 
Query:   13 SNLDFEIVVVEDSSPDGTLEVAQKLQELYGETVVRILSRPGKMGLGTAYMDGLRMTTGTHVILMDADMSHHPKFIPHLVRKMEEGQHDVVSGTRYGLGGGVAGWDLFRKLVSRGANFLAHTLLSPGVTDLTGSYRLFTKPVLEDIMKDVTSKGYVFQMEVTVRAKLKGHNGGEVP 537
            SNLDFEIV+V+D+SPDGT     +LQ+++    + +L RPGK+GLG+AY+DGL+ TTG  +ILMDAD SHHPKFIP  ++K +EG  DVV+G+RY  GGGV GWD  R ++SRGANFLA TLL+P V+DLTGS+RLF +  LEDIM  + SKGYVFQMEV VRA+  G+  GEVP
Sbjct:   31 SNLDFEIVLVDDNSPDGTAAAYIELQKIFRGERLLLLERPGKLGLGSAYVDGLKKTTGDFIILMDADFSHHPKFIPEFIKKQKEGDFDVVTGSRYIKGGGVCGWDAKRIIISRGANFLAQTLLNPRVSDLTGSFRLFKRKALEDIMTRIVSKGYVFQMEVAVRARQLGYTIGEVP 205
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BLAST of mRNA_H-elongata_contig68283.14455.1 vs. uniprot
Match: A0A1Y2D166_9FUNG (Dolichol-phosphate mannosyltransferase subunit 1 n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2D166_9FUNG)

HSP 1 Score: 221 bits (562), Expect = 6.750e-70
Identity = 106/173 (61.27%), Postives = 135/173 (78.03%), Query Frame = 1 
Query:   19 LDFEIVVVEDSSPDGTLEVAQKLQELYGETVVRILSRPGKMGLGTAYMDGLRMTTGTHVILMDADMSHHPKFIPHLVRKMEEGQHDVVSGTRYGLGGGVAGWDLFRKLVSRGANFLAHTLLSPGVTDLTGSYRLFTKPVLEDIMKDVTSKGYVFQMEVTVRAKLKGHNGGEVP 537
            LDFEI++++D+SPDGTLE+A++LQ  +G   + +  R GK+GLGTAY+ G+   TG +V +MDADMSHHPKFIP  ++K +EG  DVV+GTRY LGGGV GWDL RKL SR ANFLA TLL+PGV+DLTGS+RL+ KPVLE +++   SKGYVFQME+ VRA+      GEVP
Sbjct:   38 LDFEIIIIDDASPDGTLEIAKQLQAAFGADRIVLRPRAGKLGLGTAYIHGIEHATGDYVFIMDADMSHHPKFIPDFIKKQKEGNFDVVTGTRYALGGGVHGWDLRRKLTSRVANFLADTLLTPGVSDLTGSFRLYKKPVLEAMIRATKSKGYVFQMEMMVRARQMNFTIGEVP 210
[Close]
BLAST of mRNA_H-elongata_contig68283.14455.1 vs. uniprot
Match: A0A7S1U8A9_9STRA (Dolichol-phosphate mannosyltransferase subunit 1 n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8A9_9STRA)

HSP 1 Score: 219 bits (558), Expect = 2.260e-69
Identity = 108/173 (62.43%), Postives = 134/173 (77.46%), Query Frame = 1 
Query:   19 LDFEIVVVEDSSPDGTLEVAQKLQELYGETVVRILSRPGKMGLGTAYMDGLRMTTGTHVILMDADMSHHPKFIPHLVRKMEEGQHDVVSGTRYGLGGGVAGWDLFRKLVSRGANFLAHTLLSPGVTDLTGSYRLFTKPVLEDIMKDVTSKGYVFQMEVTVRAKLKGHNGGEVP 537
            +D+EIV+VED+SPDGT  VA+KLQ +YG   + IL R GK+GLG+AYMDGL+   G ++ILMDADMSHHPKFIP  +        DVV+GTRY  GGGVAGWDL RKL SR AN+LA  LL+PGV+DLTGS+RL+ + VLEDIM+ + S+GYVFQMEV VRA+  G++  EVP
Sbjct:   32 VDYEIVIVEDNSPDGTQAVAEKLQSVYGADRIVILPRKGKLGLGSAYMDGLKKAKGDYIILMDADMSHHPKFIPEFIAAQASTNADVVTGTRYRGGGGVAGWDLKRKLTSRVANYLAQVLLNPGVSDLTGSFRLYKRDVLEDIMQHMQSRGYVFQMEVAVRARAMGYSFAEVP 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68283.14455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ07_ECTSI3.040e-10186.78Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
A0A835Z8R0_9STRA3.890e-7866.67Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
W7U3K0_9STRA2.490e-7362.71Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
A0A2C6L837_9APIC5.410e-7262.22Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
DPM1_DICDI7.430e-7261.85Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
A0A2A9M7J9_9APIC1.000e-7061.49Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
A0A151Z497_9MYCE3.150e-7058.38Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
F0VRN2_NEOCL5.760e-7061.71Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
A0A1Y2D166_9FUNG6.750e-7061.27Dolichol-phosphate mannosyltransferase subunit 1 n... [more]
A0A7S1U8A9_9STRA2.260e-6962.43Dolichol-phosphate mannosyltransferase subunit 1 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68283contigH-elongata_contig68283:1439..3292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score302.0
Seed ortholog evalue1.9e-79
Seed eggNOG ortholog2880.D7FQ07
Preferred nameDPM1
KEGG rclassRC00005
KEGG koko:K00721
KEGG ReactionR01009
KEGG Pathwayko00510,ko01100,map00510,map01100
GOsGO:0000030,GO:0003674,GO:0003824,GO:0004169,GO:0004582,GO:0005488,GO:0005537,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006066,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006493,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006720,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016093,GO:0016740,GO:0016757,GO:0016758,GO:0019348,GO:0019538,GO:0019637,GO:0019673,GO:0030246,GO:0031501,GO:0031984,GO:0032991,GO:0033185,GO:0034641,GO:0034645,GO:0035268,GO:0035269,GO:0036094,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042221,GO:0043170,GO:0043178,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046483,GO:0046486,GO:0046488,GO:0048029,GO:0050896,GO:0055086,GO:0060359,GO:0070085,GO:0071704,GO:0090407,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901698,GO:1902494,GO:1903509,GO:1990234
EggNOG free text desc.dolichyl-phosphate beta-D-mannosyltransferase activity
EggNOG OGsCOG0463@1,KOG2978@2759
EC2.4.1.83
COG Functional cat.M
CAZyGT2
BiGG ReactioniRC1080.CRv4_Au5_s3_g10178_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDolichol-phosphate mannosyltransferase, family GT2
Ec32 orthologEc-01_007940.1
Exons5
Model size537
Cds size537
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68283.14455.1prot_H-elongata_contig68283.14455.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68283 1439..3292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931076.2872136-CDS-H-elongata_contig68283:1438..15281622931076.2872136-CDS-H-elongata_contig68283:1438..1528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68283 1439..1528 +
1691679688.087577-CDS-H-elongata_contig68283:1438..15281691679688.087577-CDS-H-elongata_contig68283:1438..1528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68283 1439..1528 +
1622931076.304828-CDS-H-elongata_contig68283:2003..21431622931076.304828-CDS-H-elongata_contig68283:2003..2143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68283 2004..2143 +
1691679688.0981264-CDS-H-elongata_contig68283:2003..21431691679688.0981264-CDS-H-elongata_contig68283:2003..2143Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68283 2004..2143 +
1622931076.3215246-CDS-H-elongata_contig68283:2283..23651622931076.3215246-CDS-H-elongata_contig68283:2283..2365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68283 2284..2365 +
1691679688.1065624-CDS-H-elongata_contig68283:2283..23651691679688.1065624-CDS-H-elongata_contig68283:2283..2365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68283 2284..2365 +
1622931076.3382857-CDS-H-elongata_contig68283:2603..27601622931076.3382857-CDS-H-elongata_contig68283:2603..2760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68283 2604..2760 +
1691679688.114458-CDS-H-elongata_contig68283:2603..27601691679688.114458-CDS-H-elongata_contig68283:2603..2760Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68283 2604..2760 +
1622931076.3566859-CDS-H-elongata_contig68283:3224..32921622931076.3566859-CDS-H-elongata_contig68283:3224..3292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68283 3225..3292 +
1691679688.1331477-CDS-H-elongata_contig68283:3224..32921691679688.1331477-CDS-H-elongata_contig68283:3224..3292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68283 3225..3292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68283.14455.1

>prot_H-elongata_contig68283.14455.1 ID=prot_H-elongata_contig68283.14455.1|Name=mRNA_H-elongata_contig68283.14455.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=179bp
STTSSNLDFEIVVVEDSSPDGTLEVAQKLQELYGETVVRILSRPGKMGLG
TAYMDGLRMTTGTHVILMDADMSHHPKFIPHLVRKMEEGQHDVVSGTRYG
LGGGVAGWDLFRKLVSRGANFLAHTLLSPGVTDLTGSYRLFTKPVLEDIM
KDVTSKGYVFQMEVTVRAKLKGHNGGEVP
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mRNA from alignment at H-elongata_contig68283:1439..3292+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68283.14455.1 ID=mRNA_H-elongata_contig68283.14455.1|Name=mRNA_H-elongata_contig68283.14455.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1854bp|location=Sequence derived from alignment at H-elongata_contig68283:1439..3292+ (Himanthalia elongata Himel1 dioecious)
TCGACCACATCCAGCAATCTGGATTTCGAGATCGTGGTGGTGGAGGATAG
CAGTCCTGATGGCACTCTGGAGGTCGCTCAAAAACTGCAGGTGATCATTC
CTCGTCACAAATTTGGCGCCGATGTACAAAACGTCGAAAGAGGTTTTGAT
GCTCGCCGTAGGCGGAGAAACACGCGGAATGATTTTCGCTTTTGAGAGAT
GGGCGCAATGATGTACGGTAAACATTGAGACGACGCATAGAGATGAGTCT
ATGCGGAAAGTGTACCGTCCCTCATGTATATACAGTACATCAGACGCGGA
TCGGTTATGCTTTAACCAGAGGAAGGTGGGAGAAGATACGGACGCTCCTA
CATGGTTTGCGAGGGCAAGTTTTTTTTTTTTTGAAGACACACAGTGCATT
CTCGCTTTCACTCGTTTCGATGGCCAAGATGCGCTCTTATCGCCCTGAGA
GAGATGTCCACCACGTGCAGGCGAGACCGTCCCCGCAACGGAATGAGGGA
CACGATGTCTCATCGAACCGATTTCTTCACGATAGCCTTTTTTCCCGCGT
TTCCTCCTCCAACAGGAGCTTTACGGCGAGACAGTTGTGAGGATCCTCTC
TCGACCAGGGAAGATGGGACTTGGGACGGCTTACATGGACGGGTTGAGGA
TGACCACTGGAACGCACGTTATTCTCATGGATGCCGACATGTCACATCAC
CCCAAGTAGGTCATCATGAAGCATGTGTAAGCTAGACTCTTCCTCTGCGC
GCACAGTATAAAATTGAGGCGTATAAACTGATGCCTTTTACACTCGCTTT
TACCGCGGTTGTTTGTTTTGCTTTGCTTAACCCGCAAATGCTAAGGTTCA
TTCCTCACCTGGTGCGGAAGATGGAGGAAGGTCAACATGACGTGGTCAGC
GGCACGCGATACGGCTTGGGCGGAGGAGTAAGTATGCACACTCCATAATA
GAAGCTGCTCCAAACACGATTGATTGATTGATTGATGATTGATTTGTGTT
TGATGTTCGCGACCCACCTCCTTTAGAGGACCTGGACAATCACATCAACG
CTCTCCAACTATTCGATATGCATGCTCTGCAGCTTCAGCCCTGAACCTGA
CTCTGGCCTCGTTCGTTCTCCTCCTCTCTTCCCCGCCCCCCTCTCGTTGA
TCCCCTAACCGCCAGGTGGCAGGGTGGGACTTATTCCGCAAGTTGGTAAG
TCGCGGAGCCAACTTCCTAGCACATACACTGCTCTCGCCGGGGGTGACGG
ATCTGACGGGGAGCTATCGGCTTTTCACCAAACCGGTCTTGGAGGACATA
ATGAAGGACGTCACCAGCAAAGGTGATGATTTTGTTTTTTCGGGGAAGGG
GGGGGGGAGGGGGGATCGTTCGAGTACCAGACGCATGATCTTATTATAAT
ACAAACCCGGAGCTTGTGCTGCATTGTGAAGATATATTTAAATATGCATA
TTAATCGGTTTGCTGAAGAAAGTTATTCAAGCCAGCGAGGGTGTGCTTCA
TCTGCATTTTGGGGGTGACCTTTTTTTTTGTTAGTTTTCGTACCGGTGTA
CCGCAGATCCTTGCATTCTTTGTTGGTAAATCGCGTGAAGAAGGTTGCTT
CATCGACGTGGTTCGTTTCATTAAAGCACTTTGAAACGGAACCAATTATC
AATACAATGGCGGTGTTTGGCTGTCGCTGGATATCTAATACAATTAGTGA
GGACCGGAATGAGTGATCGAGACCAACGTTGCCTGACTGAAGCGTATCAC
GTCTTTGTTTGAAATCGATCGTGTGTGTCTGTCCAGGGTACGTTTTCCAA
ATGGAAGTTACCGTGAGGGCGAAGCTGAAAGGGCACAACGGCGGAGAGGT
GCCG
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Coding sequence (CDS) from alignment at H-elongata_contig68283:1439..3292+

>mRNA_H-elongata_contig68283.14455.1 ID=mRNA_H-elongata_contig68283.14455.1|Name=mRNA_H-elongata_contig68283.14455.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1074bp|location=Sequence derived from alignment at H-elongata_contig68283:1439..3292+ (Himanthalia elongata Himel1 dioecious)
TCGACCACATCCAGCAATCTGGATTTCGAGATCGTGGTGGTGGAGGATAG
CAGTCCTGATGGCACTCTGGAGGTCGCTCAAAAACTGCAGTCGACCACAT
CCAGCAATCTGGATTTCGAGATCGTGGTGGTGGAGGATAGCAGTCCTGAT
GGCACTCTGGAGGTCGCTCAAAAACTGCAGGAGCTTTACGGCGAGACAGT
TGTGAGGATCCTCTCTCGACCAGGGAAGATGGGACTTGGGACGGCTTACA
TGGACGGGTTGAGGATGACCACTGGAACGCACGTTATTCTCATGGATGCC
GACATGTCACATCACCCCAAGAGCTTTACGGCGAGACAGTTGTGAGGATC
CTCTCTCGACCAGGGAAGATGGGACTTGGGACGGCTTACATGGACGGGTT
GAGGATGACCACTGGAACGCACGTTATTCTCATGGATGCCGACATGTCAC
ATCACCCCAAGTTCATTCCTCACCTGGTGCGGAAGATGGAGGAAGGTCAA
CATGACGTGGTCAGCGGCACGCGATACGGCTTGGGCGGAGGAGTTCATTC
CTCACCTGGTGCGGAAGATGGAGGAAGGTCAACATGACGTGGTCAGCGGC
ACGCGATACGGCTTGGGCGGAGGAGTGGCAGGGTGGGACTTATTCCGCAA
GTTGGTAAGTCGCGGAGCCAACTTCCTAGCACATACACTGCTCTCGCCGG
GGGTGACGGATCTGACGGGGAGCTATCGGCTTTTCACCAAACCGGTCTTG
GAGGACATAATGAAGGACGTCACCAGCAAAGGTGGCAGGGTGGGACTTAT
TCCGCAAGTTGGTAAGTCGCGGAGCCAACTTCCTAGCACATACACTGCTC
TCGCCGGGGGTGACGGATCTGACGGGGAGCTATCGGCTTTTCACCAAACC
GGTCTTGGAGGACATAATGAAGGACGTCACCAGCAAAGGGTACGTTTTCC
AAATGGAAGTTACCGTGAGGGCGAAGCTGAAAGGGCACAACGGCGGAGAG
GTGCCGGGTACGTTTTCCAAATGGAAGTTACCGTGAGGGCGAAGCTGAAA
GGGCACAACGGCGGAGAGGTGCCG
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