mRNA_H-elongata_contig68187.14444.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68187.14444.1
Unique NamemRNA_H-elongata_contig68187.14444.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: D8LEZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ5_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 4.500e-145
Identity = 203/285 (71.23%), Postives = 238/285 (83.51%), Query Frame = 1
Query:    4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEGLAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTLLRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRRVL 858
            KD ++S+FGS   VYTGQPLDTIKVRMQ RPDA+S  FQCLRRTLAEES+ SLWKGS PAL G++ EN+VAFGVN+QLKR+FPD++G +APWWQPI FGG+TG+FT+ ++CPSDVIK KVQVG S+    A V A A E  GLPVLNA +M  H+LRTQG RGLFVGLGAQF RDVP+YAA FGTYET+V++GK+LPY++  E LY  AGGMAGVVGWA  MP+DS KSIIQT+ KP++LLRT+Q V  TKGW+ALF GLNAAL RAFPANAALFLGYE+VRR L
Sbjct:   16 KDVISSIFGSAACVYTGQPLDTIKVRMQARPDAFSGTFQCLRRTLAEESITSLWKGSTPALGGAVLENMVAFGVNEQLKRVFPDKDGSSAPWWQPILFGGVTGVFTTVVVCPSDVIKSKVQVGRSMRKGVA-VSANA-EAKGLPVLNATRMTAHILRTQGVRGLFVGLGAQFARDVPFYAAFFGTYETVVDRGKALPYEITPEVLYFLAGGMAGVVGWAAVMPLDSVKSIIQTTDKPESLLRTLQTVVRTKGWQALFIGLNAALARAFPANAALFLGYEIVRRAL 298          
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A836CAY2_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAY2_9STRA)

HSP 1 Score: 253 bits (645), Expect = 3.060e-80
Identity = 135/285 (47.37%), Postives = 179/285 (62.81%), Query Frame = 1
Query:    7 DAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEGLAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQ-TSTKPDTLLRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRRVL 858
            +A AS+FGS   +YTGQPLDTIKVR+Q  P+A+S   QCLR T+++E V SLWKG+ PALSG++ ENIVAF +NK+LK L+P  +  AA   QP+A+G +TG  T+  LCP DVIKC+VQV              A+ T      NA +MA+ ++RT+G RG + GL AQ  RD  +++  FG Y+ +V +        P E  Y+ AGG+AGV GW + MP D  KS +Q T   P +L    + +    G RALF G+    +RAFPANAALFLGYEV +R L
Sbjct:   10 EAAASIFGSFACIYTGQPLDTIKVRIQATPEAFSGAMQCLRTTISQEGVASLWKGATPALSGAVVENIVAFAINKELKLLWPPSDRHAAV--QPVAYGAVTGAVTAVALCPFDVIKCRVQV--------------ARGTAARRAPNAVEMAQLMVRTEGMRGFYRGLRAQVARDALFFSMFFGVYDVLVEQAMRRT-SFPREVAYIGAGGLAGVAGWLLSMPFDVLKSRMQVTPHGPRSLSAVARPLVAAGGPRALFAGVTVTCVRAFPANAALFLGYEVAKRNL 277          
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A4D9CU68_9STRA (Uncharacterized protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU68_9STRA)

HSP 1 Score: 238 bits (607), Expect = 2.800e-74
Identity = 132/269 (49.07%), Postives = 165/269 (61.34%), Query Frame = 1
Query:  100 AYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEGLAA----------------PWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTLLRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRRVL 858
            A   V   +  +  EE +R+LWKGSVPAL G++SEN VAF VN+QLKR+  D EG                       P   GG TG+FTS  LCPSDVIKCKVQV  ++               G   ++A +M  HVL+TQG +GLFVGLGAQF RD+P+YA  FGTYE  +   K+    +P E  Y+ AGG+AGV GWA  MPID AKSIIQTS  P +L+ T+  V +T+G  AL++GL  A+ RAFPANAALFLGYE+ R +L
Sbjct:   38 AAKDVLSSIVGSAIEEGLRALWKGSVPALVGAVSENAVAFSVNQQLKRILADLEGYGLGNESNQESSKAEAKEESLVVPFLTGGFTGIFTSAALCPSDVIKCKVQVSRAML------------KTGETAMDAQEMLVHVLKTQGVKGLFVGLGAQFARDIPFYAFFFGTYELSLVALKAYT-TMPQEGAYLVAGGLAGVAGWAAVMPIDMAKSIIQTSPNPKSLIPTMMDVAQTRGPMALYSGLGVAVFRAFPANAALFLGYELAREIL 293          
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A7S2S5V7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S5V7_9STRA)

HSP 1 Score: 219 bits (559), Expect = 5.620e-67
Identity = 125/293 (42.66%), Postives = 170/293 (58.02%), Query Frame = 1
Query:    1 VKDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFP----DEEGLAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTLLR---TIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRRVL 858
            +KD  ASV G++   YTGQP DT+KVR+Q RPD Y+ + Q   +T   E V +LWKGSV  ++G I EN  AFGVN+QLKR+FP    D +G A   +QP   G +TG   S  LCPS+++K + Q+            A AK T GL    +  + + V R QG  GL+ G+ AQ  RD  +YA  FG+YE +V   +     +P E  +  +GG+AG++GW   MP+D  KSIIQ   +   +        +V  T+G   LF+G   AL+R+FPANAALFLGYE+ RR L
Sbjct:   16 LKDVAASVVGAVACCYTGQPFDTVKVRLQARPDEYTGMMQTFYKTAEAEGVAALWKGSVAVVTGMIMENAAAFGVNEQLKRVFPQSAQDLDGGAQGLFQPFMLGALTGSLVSFALCPSEIVKTRTQLEV----------ANAK-TSGLKAPTSMDILKKVWRLQGMAGLYTGIDAQIARDGLFYAVFFGSYEILVRAFRKHT-SLPDEANFFISGGLAGMLGWGFVMPVDVPKSIIQGDWRARPVGDFGGAFSEVFRTRGLSGLFSGSFPALVRSFPANAALFLGYELTRRGL 296          
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A7S2L363_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L363_9STRA)

HSP 1 Score: 201 bits (512), Expect = 6.010e-60
Identity = 116/291 (39.86%), Postives = 167/291 (57.39%), Query Frame = 1
Query:    4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDE---EGLAAP-WWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTL----LRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRR 852
            +D  ++  GS+   YTGQP DT+KVRMQT P A+ SV    +  ++ E + +LWKG+VP   G ++EN +AFGVN+ LKR FPDE   +    P   +P   G ITG  ++T+L PS+V+K K QV                  VG    ++A + + +++ QG R LF+G  AQ +RD+P+YA  FGTYE      ++    +P E  +  +GG AG++GWA  MP D  K+ +Q S     +       I+ VRE +G  AL+TGL   + RAFPANAALFLG E+ ++
Sbjct:   16 RDIFSASIGSVACCYTGQPFDTVKVRMQTSPAAFPSVLFTSKSIVSNEGIPALWKGAVPTALGMVAENAMAFGVNEALKRTFPDEAKSDPTKRPDLMRPFLMGAITGCCSATVLLPSEVVKAKTQV-----------------VVGNTGASSADIYKKMMKRQGIRSLFIGFDAQIMRDMPFYAFFFGTYELNCYLFRTFVPSMPEELNFFLSGGFAGMLGWAAAMPFDVPKTNVQASWDSKVVGSYFPELIRIVRE-RGVLALYTGLIPTIARAFPANAALFLGVEMGKK 288          
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A7S2URT5_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URT5_9STRA)

HSP 1 Score: 201 bits (511), Expect = 7.770e-60
Identity = 116/293 (39.59%), Postives = 161/293 (54.95%), Query Frame = 1
Query:    4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEGLA-----APWWQPIAFGGITGLFTSTILCPSDVIKCKVQV--GTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQT--STKP-DTLLRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRR 852
            +D  ++  GS+   YTGQPLDTIKVRMQT P  Y+ V Q   +T+ EE V +LWKG+VP   G   EN VAFGVN+ LKR FPD+             +P   G ITG  ++ +L PS+VIK K QV  G+S                    L++  + + +++ QG R LF G  AQ +RD P+YA  FG YE      ++    +P E  +  +GG+AG+ GW + MP D  K+ +Q    TK   +    + K+   +G   L++GL   L+RAFPANAALFLG E+ +R
Sbjct:   12 RDVFSATLGSVCCCYTGQPLDTIKVRMQTNPHLYTGVIQTFSKTVGEEGVAALWKGAVPTAVGMALENAVAFGVNEALKRAFPDDPAAKNADERPDLLKPFLMGSITGCCSAIVLLPSEVIKAKTQVEIGSS--------------------LSSKDILQKMIKKQGVRSLFCGFDAQLMRDAPFYAVFFGGYELSCYLFRTHVPSMPEELNFFLSGGLAGMFGWTVAMPFDVPKTNVQARYDTKVFGSYFPEMIKIARERGVVGLYSGLGPTLVRAFPANAALFLGVEMGKR 284          
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A7S4T4E9_9STRA (Hypothetical protein n=4 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S4T4E9_9STRA)

HSP 1 Score: 198 bits (504), Expect = 9.820e-59
Identity = 114/298 (38.26%), Postives = 167/298 (56.04%), Query Frame = 1
Query:    4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEG---------LAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTLL------RTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRR 852
            +D  ++  GS+   YTGQP DT+KVRMQT P+ YSS+++    T+ EE +++ WKG+VP   G  +EN +AFGVN+ LKR FPD                  +P   G ITG  ++ +L PS+V+K K QV                  VG  V ++  + + ++R QG++ LF GL AQ +RD P+YA  FG+YE      ++    +P E  Y  +GG+AG++GW   MP D  K+ +Q+  + DT +      + IQ  +E +G   L+ GL   L+RAFPANAALFLG E+ +R
Sbjct:   12 RDIFSATVGSIFCCYTGQPFDTVKVRMQTNPELYSSIYKTATTTMGEEGIKAFWKGAVPTAMGMAAENAMAFGVNEALKRAFPDPNKDQFDHNGAQRRPDLLRPFLMGAITGCCSALVLLPSEVVKAKTQV-----------------AVGTDV-SSNDIFKKMVRKQGYKSLFCGLDAQLMRDGPFYAFFFGSYEMSCFLFRTYVPSMPEELNYFISGGLAGMLGWTAAMPFDVPKTNVQS--RYDTQIVGSYFPQMIQITKE-RGILGLYNGLGPTLVRAFPANAALFLGVEMGKR 288          
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A1Z5JYC1_FISSO (Solute carrier family 25 (Mitochondrial ornithine transporter) member 2/15 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JYC1_FISSO)

HSP 1 Score: 197 bits (501), Expect = 2.540e-58
Identity = 110/294 (37.41%), Postives = 161/294 (54.76%), Query Frame = 1
Query:    4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPD-----EEGLAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQV--GTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPD---TLLRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRRV 855
            +D  ++  GS+   Y GQP DT+KVRMQT P  YS+V    +    +E V + WKG+VP   G  +EN +AFGVN  LKR FPD     EEG  +   +P A G ITG  ++ +L PS+++K K+QV  G ++T                      ++ + +L+ QG+ G+F GL AQ  RD  +YA  FG YE      ++    +P E  Y  +GG+AG VGW + MP D  K+ +Q S       T +  + ++ + +G   L++GL   L+RAFPANAALFLG E  +++
Sbjct:   12 RDIFSATIGSICCCYVGQPFDTVKVRMQTNPSIYSNVMASTQAIWMQEGVTAFWKGAVPTAMGMAAENAMAFGVNAALKRAFPDPVTQSEEGPPS-LLKPFAMGAITGCCSAFVLLPSEIVKAKLQVVVGKNITVQ--------------------EVIQSILKRQGYSGMFAGLDAQLARDSSFYAVFFGGYELFCYGFRTFVPSMPDELNYFISGGLAGCVGWTVAMPFDVPKTNVQASYDSKIVGTYVPELLRIAKQRGIGGLYSGLGPTLVRAFPANAALFLGVETGKKL 284          
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: B8C9S7_THAPS (Mitochondrial carrier (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C9S7_THAPS)

HSP 1 Score: 195 bits (496), Expect = 8.450e-58
Identity = 110/287 (38.33%), Postives = 157/287 (54.70%), Query Frame = 1
Query:    4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEGLAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTL---LRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYEVVRRV 855
            +D  ++  GS+   YTGQP DT+KVRMQT P  + SV    +  L  E + +LWKG+VP   G + EN +AFGVN+ LKR FPD  G      Q    G ITG  ++T+L PS+++K K QV                  VG    ++ ++ + ++R  G R LFVG  AQ +RD P+YA  FGTYE      ++    +P E  Y  +GG AG++GW   MP D  K+ +Q S +   +      + ++   +G  AL+TGL   + RAFPANAALFLG E  +++
Sbjct:    4 RDIFSASIGSVACCYTGQPFDTVKVRMQTNPSLFPSVAFTTKSILKNEGMGALWKGAVPTAMGMVLENAMAFGVNEALKRTFPD--GSKEDPTQRPDLGAITGCCSATVLLPSEIVKAKTQV-----------------VVGNVSASSTEIYKKMIRQSGIRSLFVGFDAQIMRDAPFYAFFFGTYELNCYLFRTYVPSMPEELNYFLSGGFAGMLGWTAAMPFDVPKTNVQASWESKVVGSYFPELLRIVRERGVLALYTGLVPTIARAFPANAALFLGVETGKKI 271          
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Match: A0A1E7EQV4_9STRA (Mitochondrial carrier n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EQV4_9STRA)

HSP 1 Score: 194 bits (492), Expect = 5.850e-57
Identity = 110/289 (38.06%), Postives = 155/289 (53.63%), Query Frame = 1
Query:    4 KDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEESVRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPD-------EEGLAAPWWQPIAFGGITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAAQMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYDVPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTL---LRTIQKVRETKGWRALFTGLNAALIRAFPANAALFLGYE 840
            +D  ++  GS+L  Y GQP DTIKV+MQT PD +S V     + L  E V + WKG+VP   G + EN +AFGVN  LKR FPD       +EG  +   +P A G ITG  ++T+L PS++IKCK Q+ T                     + ++Q+ + +++ QG R  FVG  AQ  RD  +YA  FG YE      ++    +P E  Y  +GG+AG+  W + MP D  K+ +Q+      +      + +V + +G   L+ GL   LIRAFPANAALFLG E
Sbjct:   13 RDLFSAAIGSVLCCYVGQPFDTIKVKMQTNPDQFSHVVGSTNQILKNEGVAAFWKGAVPTAGGMVLENCMAFGVNAALKRAFPDTNNDGDIKEGPPS-LLKPFAMGAITGCCSATVLLPSEIIKCKTQISTE------------------RHITSSQIVKQMMKKQGMRSFFVGFDAQLCRDSCFYALFFGGYELSCYTFRTFVPSMPDELNYFMSGGIAGMGAWFVAMPFDVPKTNVQSRYDTKVMGSYFPELIRVAKQRGIGGLYAGLGPTLIRAFPANAALFLGVE 282          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68187.14444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ5_ECTSI4.500e-14571.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAY2_9STRA3.060e-8047.37Mitochondrial carrier domain-containing protein n=... [more]
A0A4D9CU68_9STRA2.800e-7449.07Uncharacterized protein n=3 Tax=Monodopsidaceae Ta... [more]
A0A7S2S5V7_9STRA5.620e-6742.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2L363_9STRA6.010e-6039.86Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2URT5_9STRA7.770e-6039.59Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4T4E9_9STRA9.820e-5938.26Hypothetical protein n=4 Tax=Lithodesmiaceae TaxID... [more]
A0A1Z5JYC1_FISSO2.540e-5837.41Solute carrier family 25 (Mitochondrial ornithine ... [more]
B8C9S7_THAPS8.450e-5838.33Mitochondrial carrier (Fragment) n=1 Tax=Thalassio... [more]
A0A1E7EQV4_9STRA5.850e-5738.06Mitochondrial carrier n=1 Tax=Fragilariopsis cylin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68187contigH-elongata_contig68187:1733..2626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score418.7
Seed ortholog evalue2.2e-114
Seed eggNOG ortholog2880.D8LEZ5
KEGG rclassRC00004,RC02888,RC02997
KEGG koko:K15109,ko:K15397
KEGG TC2.A.29.8
KEGG ReactionR09419,R10825
KEGG Pathwayko00062,ko01110,ko04714,map00062,map01110,map04714
KEGG ModuleM00415
GOsGO:0003333,GO:0003674,GO:0005215,GO:0005290,GO:0005342,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006812,GO:0006820,GO:0006839,GO:0006855,GO:0006865,GO:0008150,GO:0008324,GO:0008509,GO:0008514,GO:0015075,GO:0015171,GO:0015174,GO:0015179,GO:0015181,GO:0015189,GO:0015238,GO:0015318,GO:0015711,GO:0015802,GO:0015807,GO:0015809,GO:0015849,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045117,GO:0046942,GO:0046943,GO:0050896,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0089709,GO:0098655,GO:0098656,GO:1901474,GO:1902022,GO:1902475,GO:1903401,GO:1903825,GO:1903826,GO:1905039,GO:1990822
EggNOG free text desc.mitochondrial transport
EggNOG OGsKOG0758@1,KOG0758@2759
EC2.3.1.199
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Exons2
Model size861
Cds size861
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.0964477-CDS-H-elongata_contig68187:1732..22231622931075.0964477-CDS-H-elongata_contig68187:1732..2223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68187 1733..2223 -
1691679687.5101786-CDS-H-elongata_contig68187:1732..22231691679687.5101786-CDS-H-elongata_contig68187:1732..2223Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68187 1733..2223 -
1622931075.1158292-CDS-H-elongata_contig68187:2256..26261622931075.1158292-CDS-H-elongata_contig68187:2256..2626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68187 2257..2626 -
1691679687.5237846-CDS-H-elongata_contig68187:2256..26261691679687.5237846-CDS-H-elongata_contig68187:2256..2626Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68187 2257..2626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68187.14444.1prot_H-elongata_contig68187.14444.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68187 1733..2626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68187.14444.1

>prot_H-elongata_contig68187.14444.1 ID=prot_H-elongata_contig68187.14444.1|Name=mRNA_H-elongata_contig68187.14444.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=287bp
VKDAVASVFGSMLAVYTGQPLDTIKVRMQTRPDAYSSVFQCLRRTLAEES
VRSLWKGSVPALSGSISENIVAFGVNKQLKRLFPDEEGLAAPWWQPIAFG
GITGLFTSTILCPSDVIKCKVQVGTSVTAAAAGVGAGAKETVGLPVLNAA
QMAEHVLRTQGFRGLFVGLGAQFVRDVPYYAALFGTYETIVNKGKSLPYD
VPLEPLYVFAGGMAGVVGWAICMPIDSAKSIIQTSTKPDTLLRTIQKVRE
TKGWRALFTGLNAALIRAFPANAALFLGYEVVRRVL*
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mRNA from alignment at H-elongata_contig68187:1733..2626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68187.14444.1 ID=mRNA_H-elongata_contig68187.14444.1|Name=mRNA_H-elongata_contig68187.14444.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=894bp|location=Sequence derived from alignment at H-elongata_contig68187:1733..2626- (Himanthalia elongata Himel1 dioecious)
GTGAAAGATGCAGTCGCCAGCGTTTTCGGTTCCATGTTAGCTGTGTACAC AGGGCAGCCGCTTGATACTATCAAGGTTCGCATGCAGACAAGGCCAGACG CCTATAGCAGCGTATTTCAATGCCTTCGGCGCACTCTAGCAGAGGAGTCC GTGAGGTCGCTGTGGAAGGGCTCTGTACCTGCGCTGAGCGGCTCCATATC CGAGAACATAGTGGCATTCGGGGTGAACAAGCAGCTCAAGCGACTGTTTC CGGACGAGGAGGGGCTCGCCGCACCGTGGTGGCAGCCTATTGCTTTCGGC GGCATCACCGGATTATTTACATCAACCATCTTGTGCCCAAGCGACGTAAT CAAGTGTAAAGTTCAAGTCGGTCGATCCCTACGGTTCCAATCGAGTGCGA CAGGGACTTCTGTGACCGCTGCTGCTGCTGGCGTGGGAGCTGGGGCGAAG GAAACCGTCGGTCTCCCGGTGCTGAACGCGGCGCAGATGGCAGAACACGT GCTGCGCACGCAGGGATTTCGAGGCCTATTCGTCGGATTGGGTGCGCAGT TCGTGAGAGACGTGCCGTACTACGCTGCCTTATTCGGAACGTACGAGACG ATCGTAAACAAGGGTAAGTCATTGCCGTATGATGTACCCCTCGAACCGCT GTATGTTTTCGCAGGAGGCATGGCAGGGGTGGTCGGCTGGGCCATTTGCA TGCCGATAGATTCGGCCAAGTCGATCATCCAGACGTCCACGAAGCCAGAC ACATTGCTGCGGACGATTCAGAAAGTTCGCGAGACCAAGGGATGGCGAGC CCTCTTCACGGGCTTGAACGCCGCGCTCATCAGGGCGTTCCCCGCCAACG CAGCTCTCTTCCTTGGGTATGAAGTGGTGCGGCGGGTGCTATAA
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Coding sequence (CDS) from alignment at H-elongata_contig68187:1733..2626-

>mRNA_H-elongata_contig68187.14444.1 ID=mRNA_H-elongata_contig68187.14444.1|Name=mRNA_H-elongata_contig68187.14444.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1722bp|location=Sequence derived from alignment at H-elongata_contig68187:1733..2626- (Himanthalia elongata Himel1 dioecious)
GTGAAAGATGCAGTCGCCAGCGTTTTCGGTTCCATGTTAGCTGTGTACAC
AGGGCAGCCGCTTGATACTATCAAGGTTCGCATGCAGACAAGGCCAGACG
CCTATAGCAGCGTATTTCAATGCCTTCGGCGCACTCTAGCAGAGGAGTCC
GTGAGGTCGCTGTGGAAGGGCTCTGTACCTGCGCTGAGCGGCTCCATATC
CGAGAACATAGTGGCATTCGGGGTGAACAAGCAGCTCAAGCGACTGTTTC
CGGACGAGGAGGGGCTCGCCGCACCGTGGTGGCAGCCTATTGCTTTCGGC
GGCATCACCGGATTATTTACATCAACCATCTTGTGCCCAAGCGACGTAAT
CAAGTGTAAAGTTCAAGTCGGTGAAAGATGCAGTCGCCAGCGTTTTCGGT
TCCATGTTAGCTGTGTACACAGGGCAGCCGCTTGATACTATCAAGGTTCG
CATGCAGACAAGGCCAGACGCCTATAGCAGCGTATTTCAATGCCTTCGGC
GCACTCTAGCAGAGGAGTCCGTGAGGTCGCTGTGGAAGGGCTCTGTACCT
GCGCTGAGCGGCTCCATATCCGAGAACATAGTGGCATTCGGGGTGAACAA
GCAGCTCAAGCGACTGTTTCCGGACGAGGAGGGGCTCGCCGCACCGTGGT
GGCAGCCTATTGCTTTCGGCGGCATCACCGGATTATTTACATCAACCATC
TTGTGCCCAAGCGACGTAATCAAGTGTAAAGTTCAAGTCGGGACTTCTGT
GACCGCTGCTGCTGCTGGCGTGGGAGCTGGGGCGAAGGAAACCGTCGGTC
TCCCGGTGCTGAACGCGGCGCAGATGGCAGAACACGTGCTGCGCACGCAG
GGATTTCGAGGCCTATTCGTCGGATTGGGTGCGCAGTTCGTGAGAGACGT
GCCGTACTACGCTGCCTTATTCGGAACGTACGAGACGATCGTAAACAAGG
GTAAGTCATTGCCGTATGATGTACCCCTCGAACCGCTGTATGTTTTCGCA
GGAGGCATGGCAGGGGTGGTCGGCTGGGCCATTTGCATGCCGATAGATTC
GGCCAAGTCGATCATCCAGACGTCCACGAAGCCAGACACATTGCTGCGGA
CGATTCAGAAAGTTCGCGAGACCAAGGGATGGCGAGCCCTCTTCACGGGC
TTGAACGCCGCGCTCATCAGGGCGTTCCCCGCCAACGCAGCTCTCTTCCT
TGGGTATGAAGTGGTGCGGCGGGTGCTATAAGGACTTCTGTGACCGCTGC
TGCTGCTGGCGTGGGAGCTGGGGCGAAGGAAACCGTCGGTCTCCCGGTGC
TGAACGCGGCGCAGATGGCAGAACACGTGCTGCGCACGCAGGGATTTCGA
GGCCTATTCGTCGGATTGGGTGCGCAGTTCGTGAGAGACGTGCCGTACTA
CGCTGCCTTATTCGGAACGTACGAGACGATCGTAAACAAGGGTAAGTCAT
TGCCGTATGATGTACCCCTCGAACCGCTGTATGTTTTCGCAGGAGGCATG
GCAGGGGTGGTCGGCTGGGCCATTTGCATGCCGATAGATTCGGCCAAGTC
GATCATCCAGACGTCCACGAAGCCAGACACATTGCTGCGGACGATTCAGA
AAGTTCGCGAGACCAAGGGATGGCGAGCCCTCTTCACGGGCTTGAACGCC
GCGCTCATCAGGGCGTTCCCCGCCAACGCAGCTCTCTTCCTTGGGTATGA
AGTGGTGCGGCGGGTGCTATAA
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