mRNA_H-elongata_contig68167.14443.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig68167.14443.1
Unique NamemRNA_H-elongata_contig68167.14443.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig68167.14443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig68167contigH-elongata_contig68167:932..2443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_000010.1
Exons2
Model size1143
Cds size1050
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig68167.14443.1prot_H-elongata_contig68167.14443.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig68167 950..2368 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931074.9846754-UTR-H-elongata_contig68167:931..9491622931074.9846754-UTR-H-elongata_contig68167:931..949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68167 932..949 -
1691679687.4628563-UTR-H-elongata_contig68167:931..9491691679687.4628563-UTR-H-elongata_contig68167:931..949Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68167 932..949 -
1622931075.040811-UTR-H-elongata_contig68167:2368..24431622931075.040811-UTR-H-elongata_contig68167:2368..2443Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68167 2369..2443 -
1691679687.496615-UTR-H-elongata_contig68167:2368..24431691679687.496615-UTR-H-elongata_contig68167:2368..2443Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig68167 2369..2443 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931075.0113032-CDS-H-elongata_contig68167:949..16851622931075.0113032-CDS-H-elongata_contig68167:949..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68167 950..1685 -
1691679687.476105-CDS-H-elongata_contig68167:949..16851691679687.476105-CDS-H-elongata_contig68167:949..1685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68167 950..1685 -
1622931075.0251482-CDS-H-elongata_contig68167:2054..23681622931075.0251482-CDS-H-elongata_contig68167:2054..2368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68167 2055..2368 -
1691679687.486169-CDS-H-elongata_contig68167:2054..23681691679687.486169-CDS-H-elongata_contig68167:2054..2368Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig68167 2055..2368 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig68167.14443.1

>prot_H-elongata_contig68167.14443.1 ID=prot_H-elongata_contig68167.14443.1|Name=mRNA_H-elongata_contig68167.14443.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=350bp
MDDKVVQLHFDALASWIRPPAVTRKRNNMASSVRCAMADERAAEESPGAA
RSIPPEVGSGQVDEEGKAGEAATNGAVGVDKRYQAALQRAAEGRAKKKNP
AQSHPNRIVSATPAPCAVTVGEHVVVPNSIKKKRVSSDLSEYDRGSSSSS
RNLEESLVKPAKRARVKETCKTRVPFGLPVSWLLGEADAGASKTKCPEMQ
KKWTEAVKPEVPTITVVLTTATPATASLPASNGKSKAAAPKAQANASKPG
TNTKTTHTKVAATPSDRKNRSPVGKMVVAKPAAPPSMSSSRSSDRTRQKP
ARFLDAAEDNSDDDGGSEELHESDSIESRKASDASDGSDSVNGDDCAEP*
back to top

mRNA from alignment at H-elongata_contig68167:932..2443-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig68167.14443.1 ID=mRNA_H-elongata_contig68167.14443.1|Name=mRNA_H-elongata_contig68167.14443.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1512bp|location=Sequence derived from alignment at H-elongata_contig68167:932..2443- (Himanthalia elongata Himel1 dioecious)
AGTAATTGTGGAACAATCAACCTTGCCGTCGGCTTGCCAGCCAAGGGGTT
ATGTCCCAACGGGAAACGGTGGTCGATGGATGACAAGGTGGTTCAACTAC
ACTTCGACGCCTTGGCGAGTTGGATTAGGCCGCCTGCGGTAACAAGAAAA
CGGAACAACATGGCATCCTCCGTCCGATGCGCCATGGCAGACGAACGAGC
CGCTGAAGAGTCGCCGGGCGCCGCCCGTTCAATCCCGCCTGAAGTGGGGT
CTGGACAAGTAGACGAAGAAGGTAAAGCCGGTGAAGCTGCGACCAACGGT
GCGGTAGGGGTAGATAAGCGGTATCAAGCGGCCCTTCAGCGTGCCGCTGA
GGGAAGAGCTAAGAAGAAGAACCCGGCGCAGAGTCACCCGTGAGTTATAC
CGGAAGACTAGATTAGATTTTACAGTGGATTTATAAATGCAGTTTCCCGG
GGTAGTAGTGTTTGATGTTGGGGCATGGGGCAGTCGCGTATCTCGGTGTG
TCCTAACTTGTTGTGTTTACGAAGAGTATCGTTTTTGAAGCATGGTAAGC
GCCGCCAGAGTACCATGGACCCCGTGGCTGCTGCCCCCCCGCGTACTACT
CTGCAATTTGTTTTAGTCGCTGTTATAGTACCACCTCGATTATAACATAA
CATGTTGCCAGAGGCAAGGCAAATCATCCCCAGCATATGCGCCCGACGCT
GTCGCAACATCGACTCCCCCTGTCCCCCGTAACTCCTTTTCTCGCGTGCC
TGCTCCAGGAACAGGATTGTTTCGGCGACGCCCGCCCCATGCGCTGTGAC
CGTAGGCGAGCACGTCGTCGTTCCGAACTCTATTAAGAAGAAGAGGGTGT
CGAGCGACCTGTCTGAATACGACCGCGGAAGCAGCAGCTCGTCGAGGAAC
TTGGAGGAGAGCCTGGTAAAACCCGCAAAGAGAGCTCGTGTGAAGGAAAC
ATGCAAAACGCGCGTGCCCTTCGGCTTGCCTGTTAGTTGGCTCCTGGGAG
AAGCCGACGCCGGGGCCTCGAAGACTAAGTGTCCAGAGATGCAGAAAAAG
TGGACAGAAGCCGTAAAGCCAGAAGTCCCCACAATCACAGTGGTTTTGAC
TACGGCAACTCCAGCAACAGCGTCCCTCCCTGCGTCAAACGGCAAGAGTA
AGGCGGCGGCGCCGAAGGCACAGGCTAATGCGAGCAAGCCCGGCACCAAC
ACAAAAACAACCCACACAAAAGTGGCGGCGACGCCCTCAGACAGGAAGAA
CCGTAGTCCAGTAGGCAAGATGGTTGTGGCGAAGCCCGCGGCGCCGCCAT
CGATGTCCAGTTCCAGGTCCAGCGACAGAACAAGGCAGAAACCGGCAAGG
TTTTTGGATGCGGCAGAAGATAACTCAGACGATGACGGCGGCAGCGAAGA
GCTACACGAGAGCGATTCCATCGAATCAAGGAAGGCGAGCGACGCTAGCG
ATGGAAGCGATTCGGTAAACGGGGACGATTGTGCCGAGCCTTGAGTCAAC
CATATTAGCGGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig68167:932..2443-

>mRNA_H-elongata_contig68167.14443.1 ID=mRNA_H-elongata_contig68167.14443.1|Name=mRNA_H-elongata_contig68167.14443.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2100bp|location=Sequence derived from alignment at H-elongata_contig68167:932..2443- (Himanthalia elongata Himel1 dioecious)
ATGGATGACAAGGTGGTTCAACTACACTTCGACGCCTTGGCGAGTTGGAT
TAGGCCGCCTGCGGTAACAAGAAAACGGAACAACATGGCATCCTCCGTCC
GATGCGCCATGGCAGACGAACGAGCCGCTGAAGAGTCGCCGGGCGCCGCC
CGTTCAATCCCGCCTGAAGTGGGGTCTGGACAAGTAGACGAAGAAGGTAA
AGCCGGTGAAGCTGCGACCAACGGTGCGGTAGGGGTAGATAAGCGGTATC
AAGCGGCCCTTCAGCGTGCCGCTGAGGGAAGAGCTAAGAAGAAGAACCCG
GCGCAGAGTCACCCATGGATGACAAGGTGGTTCAACTACACTTCGACGCC
TTGGCGAGTTGGATTAGGCCGCCTGCGGTAACAAGAAAACGGAACAACAT
GGCATCCTCCGTCCGATGCGCCATGGCAGACGAACGAGCCGCTGAAGAGT
CGCCGGGCGCCGCCCGTTCAATCCCGCCTGAAGTGGGGTCTGGACAAGTA
GACGAAGAAGGTAAAGCCGGTGAAGCTGCGACCAACGGTGCGGTAGGGGT
AGATAAGCGGTATCAAGCGGCCCTTCAGCGTGCCGCTGAGGGAAGAGCTA
AGAAGAAGAACCCGGCGCAGAGTCACCCGAACAGGATTGTTTCGGCGACG
CCCGCCCCATGCGCTGTGACCGTAGGCGAGCACGTCGTCGTTCCGAACTC
TATTAAGAAGAAGAGGGTGTCGAGCGACCTGTCTGAATACGACCGCGGAA
GCAGCAGCTCGTCGAGGAACTTGGAGGAGAGCCTGGTAAAACCCGCAAAG
AGAGCTCGTGTGAAGGAAACATGCAAAACGCGCGTGCCCTTCGGCTTGCC
TGTTAGTTGGCTCCTGGGAGAAGCCGACGCCGGGGCCTCGAAGACTAAGT
GTCCAGAGATGCAGAAAAAGTGGACAGAAGCCGTAAAGCCAGAAGTCCCC
ACAATCACAGTGGTTTTGACTACGGCAACTCCAGCAACAGCGTCCCTCCC
TGCGTCAAACGGCAAGAGTAAGGCGGCGGCGCCGAAGGCACAGGCTAATG
CGAGCAAGCCCGGCACCAACACAAAAACAACCCACACAAAAGTGGCGGCG
ACGCCCTCAGACAGGAAGAACCGTAGTCCAGTAGGCAAGATGGTTGTGGC
GAAGCCCGCGGCGCCGCCATCGATGTCCAGTTCCAGGTCCAGCGACAGAA
CAAGGCAGAAACCGGCAAGGTTTTTGGATGCGGCAGAAGATAACTCAGAC
GATGACGGCGGCAGCGAAGAGCTACACGAGAGCGATTCCATCGAATCAAG
GAAGGCGAGCGACGCTAGCGATGGAAGCGATTCGGTAAACGGGGACGATT
GTGCCGAGCCTTGAGAACAGGATTGTTTCGGCGACGCCCGCCCCATGCGC
TGTGACCGTAGGCGAGCACGTCGTCGTTCCGAACTCTATTAAGAAGAAGA
GGGTGTCGAGCGACCTGTCTGAATACGACCGCGGAAGCAGCAGCTCGTCG
AGGAACTTGGAGGAGAGCCTGGTAAAACCCGCAAAGAGAGCTCGTGTGAA
GGAAACATGCAAAACGCGCGTGCCCTTCGGCTTGCCTGTTAGTTGGCTCC
TGGGAGAAGCCGACGCCGGGGCCTCGAAGACTAAGTGTCCAGAGATGCAG
AAAAAGTGGACAGAAGCCGTAAAGCCAGAAGTCCCCACAATCACAGTGGT
TTTGACTACGGCAACTCCAGCAACAGCGTCCCTCCCTGCGTCAAACGGCA
AGAGTAAGGCGGCGGCGCCGAAGGCACAGGCTAATGCGAGCAAGCCCGGC
ACCAACACAAAAACAACCCACACAAAAGTGGCGGCGACGCCCTCAGACAG
GAAGAACCGTAGTCCAGTAGGCAAGATGGTTGTGGCGAAGCCCGCGGCGC
CGCCATCGATGTCCAGTTCCAGGTCCAGCGACAGAACAAGGCAGAAACCG
GCAAGGTTTTTGGATGCGGCAGAAGATAACTCAGACGATGACGGCGGCAG
CGAAGAGCTACACGAGAGCGATTCCATCGAATCAAGGAAGGCGAGCGACG
CTAGCGATGGAAGCGATTCGGTAAACGGGGACGATTGTGCCGAGCCTTGA
back to top