mRNA_H-elongata_contig6808.14437.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6808.14437.1
Unique NamemRNA_H-elongata_contig6808.14437.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A6H5LB61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB61_9PHAE)

HSP 1 Score: 391 bits (1004), Expect = 1.460e-133
Identity = 203/285 (71.23%), Postives = 240/285 (84.21%), Query Frame = 1
Query:    1 TMKVESAPDPDRYGAALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDE 855
            T  VE A DPDRY AA+ +TA A  GA  FGAG+N  LG +KA+Q+ AGY+VEMSLSVDNLFVFLLLFKFFKVPF++QNRVL+YGI GAVVMRAIFI LGE  MS+F P+LLGFA IL +SSY LLSE E D  EDL +N +++  S+TLDAT+SYDG+KFFT V+GV+RATPLLLVLVCVELSD++FA+DSIPAVFAVTKDPFIVYTSNIWAI+NLRSL+T+L+SAV+DL YLRPAVA VLGFVG KIGGEF GY + T++SL II G+L  G+AASL   G++
Sbjct:   66 TTMVERA-DPDRYVAAIATTAAATIGAIAFGAGVNEALGIDKALQFFAGYVVEMSLSVDNLFVFLLLFKFFKVPFDAQNRVLTYGIIGAVVMRAIFIGLGEATMSVFHPILLGFAGILLYSSYTLLSESEGDGDEDLSDNKLIAFASSTLDATESYDGDKFFTMVDGVRRATPLLLVLVCVELSDIVFAVDSIPAVFAVTKDPFIVYTSNIWAILNLRSLFTLLASAVEDLVYLRPAVAAVLGFVGCKIGGEFFGYNVSTELSLEIITGVLAAGVAASLILPGEK 349          
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A835YKR2_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKR2_9STRA)

HSP 1 Score: 335 bits (858), Expect = 2.830e-111
Identity = 178/285 (62.46%), Postives = 223/285 (78.25%), Query Frame = 1
Query:    4 MKVESAPDPDRYGAALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEK 858
            M  +  PDPDRY  A+ ++ +++  AA FGAGI+ + G+E AV Y AGY+VE SLSVDNLFVFLLLF++F VP   Q RVL +GI GAV++R +FIALGE A+  F+PVLLGFAAIL  S+YKL +E E  E  DL +N +V  +S  L ATD YDG+KFFT V+GV+RATPLLLVLVCVELSD++FA+DSIPAVF  T+DPF+VYTSNI+AI+NLRSLYT+LS+AV DL+YLRPAVA VL FVGAK+  E+ GYE+ T +SL +I  LLG G+A SL  +GDE+
Sbjct:   72 MPRDETPDPDRYKVAVRNSLISIAAAAAFGAGISVVQGSEAAVGYFAGYVVEQSLSVDNLFVFLLLFEYFNVPISYQQRVLRWGIVGAVILRGVFIALGEAALESFQPVLLGFAAILMVSAYKLFTEEEGGEA-DLTDNQVVQFSSKILKATDQYDGDKFFTMVDGVRRATPLLLVLVCVELSDLVFAVDSIPAVFGCTRDPFLVYTSNIFAIVNLRSLYTVLSNAVGDLEYLRPAVAGVLAFVGAKLAAEYFGYEVDTLLSLGVISTLLGGGVALSLL-KGDEE 354          
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A835YPV1_9STRA (Integral membrane protein TerC family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV1_9STRA)

HSP 1 Score: 328 bits (841), Expect = 1.260e-109
Identity = 174/283 (61.48%), Postives = 217/283 (76.68%), Query Frame = 1
Query:   10 VESAPDPDRYGAALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEK 858
            +E  PDP+RY  AL +T L++ GAA+FGAGI Y+ GTE A++Y AGYIVE SLSVDNLFVFLLLF++F VP   Q RVL +GI GAV++R IF+ALG+ A+  F+PVLL FA IL  SSYKLL+EG   E E L  N IV V+   L AT+ YDG++FFT V+G++RATPLLLVLVCVE SD++FA+DSIPAVF VTKDP IVY+SNI+AI+NLRSLYT+LS+AV DL YLRPAVA+VL FVG K+G E+    + T +SL II  +L  G+  SL ER + +
Sbjct:    5 LEEPPDPNRYATALRNTLLSIAGAALFGAGITYVKGTELALEYFAGYIVEQSLSVDNLFVFLLLFEYFSVPVAYQGRVLQWGIIGAVILRGIFVALGQAALESFQPVLLIFAGILLVSSYKLLTEGGDGEEESLHNNKIVQVSKRLLRATEEYDGDRFFTMVDGMRRATPLLLVLVCVEASDLVFAVDSIPAVFGVTKDPLIVYSSNIFAILNLRSLYTVLSTAVGDLVYLRPAVALVLAFVGLKLGAEYFSVTVDTVLSLGIISTILAGGVGLSLYERRNSE 287          
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A7S2V8N4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8N4_9STRA)

HSP 1 Score: 307 bits (786), Expect = 3.320e-100
Identity = 158/270 (58.52%), Postives = 210/270 (77.78%), Query Frame = 1
Query:   46 ALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSE---GESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAER 846
            AL  T+LAV  AA+FGAGI +  G E  +++ AGY+VE SLSVDNLFVFLLLFK+F+VP   +N+VL++GIFGA+++R I I +G  A+ +F+P+ L FAA+L +SSYK+L+E   GE +E EDL +N I+ + S  L  +D YDG KFFT V+GV+ ATPLLL LVCVELSD++FA+DS+PAVF VTKDPFIVYTSNI+AI+ LRSLYT+LS AV +L YL+PAV +VLGF+G+K+G E+ GYEI T +SL ++  LLG G+  S+  +
Sbjct:  101 ALKQTSLAVVSAAMFGAGIFWFKGVESGLEFAAGYLVEQSLSVDNLFVFLLLFKYFQVPKCYENQVLNWGIFGALLLRGIMIGIGVEAVELFQPIFLVFAAVLAYSSYKILAEWVTGEGEEEEDLEDNAIIKLASKVLTVSDEYDGGKFFTVVDGVKVATPLLLCLVCVELSDIVFAVDSVPAVFGVTKDPFIVYTSNIFAILGLRSLYTVLSKAVSELDYLQPAVGIVLGFIGSKLGLEYYGYEISTGVSLGVVAALLGGGVGLSVLTK 370          
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A4S7T9_OSTLU (Uncharacterized protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4S7T9_OSTLU)

HSP 1 Score: 294 bits (752), Expect = 2.420e-96
Identity = 156/271 (57.56%), Postives = 208/271 (76.75%), Query Frame = 1
Query:   46 ALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEK 858
            A+++  L V+ A  FGAGI  + G +KA +Y AGY++E SLSVDNLFVF+LLF++FKVP E Q RVL+YGI GA+VMRA+ +  G   +  F+P+LL FA IL FSSYKLL+EGE +E ED+ +N IV    N L+ ++ YDG+ FFT  NGV+ ATPLLLVL  VE+SDV+FA+DSIPAVF VTKDPFIVYTSN++AI++LR LYT++S AV +L+YL+ AVA+VLGF+GAK+  E+ G E+PT+ SL ++V +LG G+ ASL    ++K
Sbjct:   12 AIVAACLGVSCA--FGAGIGAVEGADKASEYFAGYLLEQSLSVDNLFVFVLLFEYFKVPPERQTRVLNYGIVGALVMRAVMVGAGVELIENFQPILLVFAGILIFSSYKLLAEGEEEE-EDMGDNAIVKFVGNFLEVSEDYDGDNFFTVQNGVKMATPLLLVLAVVEISDVVFAVDSIPAVFGVTKDPFIVYTSNLFAILSLRQLYTLISKAVGELKYLQTAVALVLGFIGAKMIVEYAGVEVPTEASLAVVVTMLGGGVGASLMLPSEDK 279          
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A096PAW2_OSTTA (Integral membrane protein TerC,riboswitch-linked n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A096PAW2_OSTTA)

HSP 1 Score: 291 bits (746), Expect = 1.840e-95
Identity = 150/257 (58.37%), Postives = 198/257 (77.04%), Query Frame = 1
Query:   88 FGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEK 858
            FGA I    G++ A +Y AGY++E SLSVDNLFVF+LLF++F+VP   Q  VL+YGIFGA++MRA+ I  G   +  F+P+LL FA IL FSSYKL+S+G+SDE ED+ +N +V   S   D +D YDG+ FFT  NGV+ ATPLLLVL  VE+SDV+FA+DSIPAVF VTKDPFIVYTSN++AI++LR LYT++S+AV +L+YL+ AVA+VLGF+G+K+  E+ G EIPT++SL ++V LL  G+AASL    D K
Sbjct:   22 FGAAIGATSGSDAASEYFAGYLLEQSLSVDNLFVFVLLFEYFQVPPARQKVVLNYGIFGALIMRAVMIVAGVELIENFKPILLVFAGILIFSSYKLISQGDSDEEEDMADNAVVKFCSKLFDVSDDYDGDNFFTVQNGVKMATPLLLVLAVVEISDVVFAVDSIPAVFGVTKDPFIVYTSNLFAILSLRQLYTLISTAVGELKYLQTAVALVLGFIGSKMVVEYTGVEIPTELSLAVVVTLLSGGVAASLYLPDDSK 278          
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: C1EER2_MICCC (Uncharacterized protein (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EER2_MICCC)

HSP 1 Score: 288 bits (737), Expect = 2.340e-94
Identity = 151/258 (58.53%), Postives = 199/258 (77.13%), Query Frame = 1
Query:   76 GAAV-FGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAER 846
            GAAV FG G+  ++G EKA ++ AGY++E SLSVDNLFVF+L+F +FKVP  SQ RVL+YGI+GA+VMRA  I  G  A++ F+P+LL FA +L FSSYKL++EGE +E ED+ EN IV   SN L  +  YDG  FFT+ NG + ATPLLL L  +ELSDV+FA+DSIPAVF +T+DPFIVY+SNI+AI+ LRSL+  +++ V +L+YL+ AVA VLGFVG K+  EF G EIPT+ SL ++VG+LG G+A SLA++
Sbjct:    6 GAAVAFGLGVGAVMGAEKAEEFFAGYLLEQSLSVDNLFVFVLVFDYFKVPLASQPRVLNYGIWGAMVMRAAMIIAGYEAVTNFKPILLVFAGVLIFSSYKLIAEGEEEEEEDMSENAIVKFCSNLLPVSKDYDGENFFTTENGAKIATPLLLCLCVIELSDVVFAVDSIPAVFGITEDPFIVYSSNIFAIMGLRSLFAFVATMVAELEYLQTAVAAVLGFVGCKMVVEFGGVEIPTEASLAVVVGMLGAGVALSLAKK 263          
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A1Y1IHD0_KLENI (Integral membrane protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IHD0_KLENI)

HSP 1 Score: 294 bits (752), Expect = 3.750e-94
Identity = 159/271 (58.67%), Postives = 207/271 (76.38%), Query Frame = 1
Query:   46 ALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEK 858
            ALI+ A  V  AAVFGAG+  + G  KA +Y AGYI+E SLSVDNLFVF+L+FK+F+VP + QNRVLS+GI GAVV RA+ I LG   +  F  V L FA IL FSS+KLL +G+ DE EDL +N+IV   S  +++TD YDGN FFT V+GV+RATPLLL L  VELSD+ FA+DSIPAVF VT DPFIV++SNI+AII LRSLYT+++  + DL++L+P++A+VLGFVGAK+  EF G ++PT+ SL +++G+LG GI  SL +  +EK
Sbjct:  173 ALITVAFWVAAAAVFGAGVGIVQGPGKASEYFAGYILEQSLSVDNLFVFVLIFKYFQVPLDYQNRVLSWGIAGAVVFRALLIGLGAATVQEFTAVNLVFAGILLFSSFKLL-QGDDDEDEDLSDNYIVKTCSKLINSTDYYDGNNFFTVVDGVKRATPLLLTLAVVELSDIAFAVDSIPAVFGVTHDPFIVFSSNIFAIICLRSLYTLVAGVMKDLRFLQPSIAIVLGFVGAKLIAEFAGLQVPTESSLAVVIGVLGSGIFLSL-KFPEEK 441          
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A7S0HY79_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HY79_9CRYP)

HSP 1 Score: 288 bits (738), Expect = 5.290e-93
Identity = 156/271 (57.56%), Postives = 202/271 (74.54%), Query Frame = 1
Query:   37 YGAALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVE-DLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAER 846
            Y  AL  TA+AV+ A+ FG GI   LG +KA++Y  GY++E SLSVDNLFVFLLLF++FKVP   Q +VLSYGI+GAVVMRA FI+ G  A+  FR VLL FA +L +SS+K+LS GE +E   D+ EN IV   S  + AT  YDG+KFFT V+GV++ATPL LVL+CVE SDV+FA+DSIPAVF VT+DP IV TSNI+AI++LR+LY +L+    DL+YL  AV  VLGFVG K+ GE+ G+E+P   SL +++GLL  G+ AS+ E+
Sbjct:   47 YKTALRDTAIAVSLASAFGVGIWNFLGADKALEYFTGYLLEESLSVDNLFVFLLLFEYFKVPQYQQKKVLSYGIWGAVVMRAAFISAGLVAIQQFRGVLLVFAGLLMYSSFKMLSGGEEEEENADVSENSIVKFASKLVQATPEYDGDKFFTIVDGVKKATPLFLVLLCVEFSDVMFAVDSIPAVFGVTEDPLIVLTSNIFAIMSLRALYQVLAQLAKDLKYLETAVGAVLGFVGLKLVGEYFGFELPEQASLSVVIGLLTAGVGASIYEK 317          
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Match: A0A7S0MZU7_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MZU7_9CRYP)

HSP 1 Score: 290 bits (741), Expect = 9.700e-93
Identity = 152/274 (55.47%), Postives = 202/274 (73.72%), Query Frame = 1
Query:   37 YGAALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYIVEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGETAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLDATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTKDPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGGEFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEK 858
            Y +A+ +T LAV+ A  FG G+  +LG  KA+++ +GY+VE SLSVDNLFVF+LLF++FKV    Q RVL +GI GA V+R  FIA G  A+  F+ VLL FA  L FSS+K+L+ GE +E EDL +N +V + S  + +T  YDG+KFFT V+GV+RATPLLLVLVCVELSDV+FA+DSIPAVF +T+DPFIV TSN++AI+ LR+L+ I+S  + +L+YL PAV +VLGFVG K+ G F G E+P   SL +I+ LLG G+  S   R DE+
Sbjct:  103 YQSAIRNTGLAVSAAVAFGIGVGAVLGVPKAIEFFSGYVVEESLSVDNLFVFILLFEYFKVSQALQQRVLKWGIIGAAVLRGAFIAAGLVAIESFKGVLLVFAGFLIFSSFKILTGGEEEEEEDLSQNSVVKLASRLVQSTTEYDGDKFFTVVDGVRRATPLLLVLVCVELSDVMFAVDSIPAVFGITEDPFIVLTSNLFAILGLRALFQIISKVMKNLEYLEPAVGLVLGFVGLKMVGGFFGVEVPPAESLAVILSLLGGGVGLSYLNRHDEE 376          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6808.14437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB61_9PHAE1.460e-13371.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YKR2_9STRA2.830e-11162.46Integral membrane protein TerC family-domain-conta... [more]
A0A835YPV1_9STRA1.260e-10961.48Integral membrane protein TerC family-domain-conta... [more]
A0A7S2V8N4_9STRA3.320e-10058.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A4S7T9_OSTLU2.420e-9657.56Uncharacterized protein n=1 Tax=Ostreococcus lucim... [more]
A0A096PAW2_OSTTA1.840e-9558.37Integral membrane protein TerC,riboswitch-linked n... [more]
C1EER2_MICCC2.340e-9458.53Uncharacterized protein (Fragment) n=1 Tax=Micromo... [more]
A0A1Y1IHD0_KLENI3.750e-9458.67Integral membrane protein n=1 Tax=Klebsormidium ni... [more]
A0A7S0HY79_9CRYP5.290e-9357.56Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S0MZU7_9CRYP9.700e-9355.47Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6808contigH-elongata_contig6808:8004..9987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score296.2
Seed ortholog evalue1.7e-77
Seed eggNOG ortholog242159.ABO99804
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0007275,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009791,GO:0009987,GO:0010027,GO:0016020,GO:0016043,GO:0031976,GO:0031984,GO:0032501,GO:0032502,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048856,GO:0055035,GO:0061024,GO:0071840,GO:0090351
EggNOG free text desc.Integral membrane protein TerC family
EggNOG OGs2QQNF@2759,34H2E@3041,37K44@33090,COG0861@1
COG Functional cat.P
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionIntegral membrane protein TerC, riboswitch-linked
Ec32 orthologEc-19_002470.1
Exons4
Model size867
Cds size864
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6808.14437.1prot_H-elongata_contig6808.14437.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6808 8004..9984 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931074.4115572-CDS-H-elongata_contig6808:8003..82671622931074.4115572-CDS-H-elongata_contig6808:8003..8267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6808 8004..8267 -
1691679687.1722953-CDS-H-elongata_contig6808:8003..82671691679687.1722953-CDS-H-elongata_contig6808:8003..8267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6808 8004..8267 -
1622931074.4236236-CDS-H-elongata_contig6808:8692..88031622931074.4236236-CDS-H-elongata_contig6808:8692..8803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6808 8693..8803 -
1691679687.1832101-CDS-H-elongata_contig6808:8692..88031691679687.1832101-CDS-H-elongata_contig6808:8692..8803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6808 8693..8803 -
1622931074.439058-CDS-H-elongata_contig6808:9071..93471622931074.439058-CDS-H-elongata_contig6808:9071..9347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6808 9072..9347 -
1691679687.194308-CDS-H-elongata_contig6808:9071..93471691679687.194308-CDS-H-elongata_contig6808:9071..9347Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6808 9072..9347 -
1622931074.459148-CDS-H-elongata_contig6808:9771..99841622931074.459148-CDS-H-elongata_contig6808:9771..9984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6808 9772..9984 -
1691679687.2054517-CDS-H-elongata_contig6808:9771..99841691679687.2054517-CDS-H-elongata_contig6808:9771..9984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6808 9772..9984 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931074.4721382-UTR-H-elongata_contig6808:9984..99871622931074.4721382-UTR-H-elongata_contig6808:9984..9987Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6808 9985..9987 -
1691679687.224279-UTR-H-elongata_contig6808:9984..99871691679687.224279-UTR-H-elongata_contig6808:9984..9987Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6808 9985..9987 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6808.14437.1

>prot_H-elongata_contig6808.14437.1 ID=prot_H-elongata_contig6808.14437.1|Name=mRNA_H-elongata_contig6808.14437.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=288bp
MKVESAPDPDRYGAALISTALAVTGAAVFGAGINYMLGTEKAVQYVAGYI
VEMSLSVDNLFVFLLLFKFFKVPFESQNRVLSYGIFGAVVMRAIFIALGE
TAMSIFRPVLLGFAAILFFSSYKLLSEGESDEVEDLRENWIVSVTSNTLD
ATDSYDGNKFFTSVNGVQRATPLLLVLVCVELSDVIFAIDSIPAVFAVTK
DPFIVYTSNIWAIINLRSLYTILSSAVDDLQYLRPAVAVVLGFVGAKIGG
EFLGYEIPTDISLVIIVGLLGVGIAASLAERGDEKTL*
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mRNA from alignment at H-elongata_contig6808:8004..9987-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6808.14437.1 ID=mRNA_H-elongata_contig6808.14437.1|Name=mRNA_H-elongata_contig6808.14437.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1984bp|location=Sequence derived from alignment at H-elongata_contig6808:8004..9987- (Himanthalia elongata Himel1 dioecious)
ACAATGAAGGTTGAAAGTGCCCCGGATCCTGATCGCTATGGAGCTGCTCT GATCTCAACAGCTCTGGCGGTCACTGGAGCAGCCGTGTTTGGCGCAGGAA TCAATTACATGCTGGGAACCGAAAAGGCTGTACAATATGTGGCAGGGTAT ATTGTAGAGATGAGCCTATCTGTTGACAACCTCTTCGTGTTCTTGTTGTT GTTCAAGTTCTTCAAGGTGAGAAAGCGATGAGGTCCAAAATCTTCCCTCG AGAATGAAAAATCAAAAGGATTGGGGTTGAAACGAAAGTCACTTTCTTCT GATGGGGTATACCATCGAACGTGCTTGGTTACCAATCCCACAGACTGGAA CGTTATCCATTCTCATCTTGGTCATAAGGGATAAACCTATCTCTCACTGG TTCACGCCAACGATTTTTTAGCGCGGTGCAATTTCAGCACTCCTACATCT CGTCAGCAGATTGTACTGTAGTAGATCTTTGCTAACTCGCATCTGCATTT TTTTTTTTAATTAATATTCGAACTCAGCAATGTTAAGTGATTGATAATGT GCAGTTTGCAGGTTAAAATGTTTGAAAACATTATACCGGTGAGTGGTGGC TTAGGAGGTCAAACTCTTCGACGTCCCATTTCTTTGGCAGGTGCCGTTTG AATCACAAAATCGAGTCCTGTCGTACGGTATATTTGGAGCGGTGGTCATG CGGGCGATTTTCATCGCCCTTGGGGAGACGGCGATGAGTATATTTCGTCC TGTTCTGCTGGGTTTCGCGGCGATTCTGTTTTTCTCATCGTATAAGCTCC TTTCCGAAGGAGAAAGTGACGAGGTTGAAGATCTCCGCGAAAATTGGATC GTATCCGTTACGTCGAATACCCTGGATGCGACGGACTCGTACGACGGAAA CAAATTCTTCACGTCGGTACGTACTTGTTCGAGGATGGTAACCTCAATCG TCCAACATTGCTGTTTTAAATTACGGCTTCATCGGAATCTGTCTAAACTA CGTAAATTATTTCTATTTTTCTGTCCACACCGTGTGGAAATACTTAGCAT CTCTAGCGAAATTATTTTTACCTAAAAGACTGAAATAAGAAAATGAAAAC GCTAACCGCTCTTTACATCTAAAGCGCGTGCTCGCGGGTGAAGAGAAAAA AATTAAGTACTCAATCGACTCTCTGCTAATGAAGGTGAATGGAGTTCAGC GGGCAACTCCCCTTCTACTTGTTCTTGTCTGCGTTGAATTGAGTGATGTG ATCTTCGCGATCGACTCTATTCCTGCAGTGTTCGCTGTTACTAAGGTGAC GTTAAAAATATTGATTTCTTATCTTGATGCATACTAGTATTTTGTTGGAG GGATTGTAATGGTACTGTAGATAAAATTTATAGCGCATTCTTGTTTCCTG TATTATTTCCTTTCAACAATTTTTCCTTCTCAGATCGCGGAAACCGGCAT GACACGTAAGGGGGTGCCACGCCGGTTTGCAAATACCGTTCGCGCTACCT TCATCGGGCTAATCACGATTTCATCAGGTTACAATTGCGTACGGATGTCG TTTACCATCGATAGTTCGTGGGTACTGAGGCAGCAGTCAAGGTAGCTTCA CCTCATGAACCAATAATTGTACGACTCTCTTTTCCCTTGACATGTACGAT GCGGTTCATCTAACAATCAAGAACTAAAAATATTAAAGTCATGTATTCAC TTCAACGTTCCGATTTACAGGATCCTTTTATCGTCTACACATCGAACATT TGGGCCATCATCAACCTGAGGAGCTTATACACCATACTGTCAAGCGCCGT CGATGACCTACAATACTTACGGCCTGCAGTAGCTGTTGTGTTGGGCTTTG TCGGCGCCAAGATCGGAGGAGAGTTTTTAGGTTATGAGATACCTACAGAT ATATCACTAGTTATAATAGTTGGATTATTAGGTGTTGGAATCGCAGCGAG CTTGGCGGAACGTGGTGACGAGAAAACTCTTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig6808:8004..9987-

>mRNA_H-elongata_contig6808.14437.1 ID=mRNA_H-elongata_contig6808.14437.1|Name=mRNA_H-elongata_contig6808.14437.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1728bp|location=Sequence derived from alignment at H-elongata_contig6808:8004..9987- (Himanthalia elongata Himel1 dioecious)
ATGAAGGTTGAAAGTGCCCCGGATCCTGATCGCTATGGAGCTGCTCTGAT
CTCAACAGCTCTGGCGGTCACTGGAGCAGCCGTGTTTGGCGCAGGAATCA
ATTACATGCTGGGAACCGAAAAGGCTGTACAATATGTGGCAGGGTATATT
GTAGAGATGAGCCTATCTGTTGACAACCTCTTCGTGTTCTTGTTGTTGTT
CAAGTTCTTCAAGATGAAGGTTGAAAGTGCCCCGGATCCTGATCGCTATG
GAGCTGCTCTGATCTCAACAGCTCTGGCGGTCACTGGAGCAGCCGTGTTT
GGCGCAGGAATCAATTACATGCTGGGAACCGAAAAGGCTGTACAATATGT
GGCAGGGTATATTGTAGAGATGAGCCTATCTGTTGACAACCTCTTCGTGT
TCTTGTTGTTGTTCAAGTTCTTCAAGGTGCCGTTTGAATCACAAAATCGA
GTCCTGTCGTACGGTATATTTGGAGCGGTGGTCATGCGGGCGATTTTCAT
CGCCCTTGGGGAGACGGCGATGAGTATATTTCGTCCTGTTCTGCTGGGTT
TCGCGGCGATTCTGTTTTTCTCATCGTATAAGCTCCTTTCCGAAGGAGAA
AGTGACGAGGTTGAAGATCTCCGCGAAAATTGGATCGTATCCGTTACGTC
GAATACCCTGGATGCGACGGACTCGTACGACGGAAACAAATTCTTCACGT
CGGTGCCGTTTGAATCACAAAATCGAGTCCTGTCGTACGGTATATTTGGA
GCGGTGGTCATGCGGGCGATTTTCATCGCCCTTGGGGAGACGGCGATGAG
TATATTTCGTCCTGTTCTGCTGGGTTTCGCGGCGATTCTGTTTTTCTCAT
CGTATAAGCTCCTTTCCGAAGGAGAAAGTGACGAGGTTGAAGATCTCCGC
GAAAATTGGATCGTATCCGTTACGTCGAATACCCTGGATGCGACGGACTC
GTACGACGGAAACAAATTCTTCACGTCGGTGAATGGAGTTCAGCGGGCAA
CTCCCCTTCTACTTGTTCTTGTCTGCGTTGAATTGAGTGATGTGATCTTC
GCGATCGACTCTATTCCTGCAGTGTTCGCTGTTACTAAGGTGAATGGAGT
TCAGCGGGCAACTCCCCTTCTACTTGTTCTTGTCTGCGTTGAATTGAGTG
ATGTGATCTTCGCGATCGACTCTATTCCTGCAGTGTTCGCTGTTACTAAG
GATCCTTTTATCGTCTACACATCGAACATTTGGGCCATCATCAACCTGAG
GAGCTTATACACCATACTGTCAAGCGCCGTCGATGACCTACAATACTTAC
GGCCTGCAGTAGCTGTTGTGTTGGGCTTTGTCGGCGCCAAGATCGGAGGA
GAGTTTTTAGGTTATGAGATACCTACAGATATATCACTAGTTATAATAGT
TGGATTATTAGGTGTTGGAATCGCAGCGAGCTTGGCGGAACGTGGTGACG
AGAAAACTCTTTAAGATCCTTTTATCGTCTACACATCGAACATTTGGGCC
ATCATCAACCTGAGGAGCTTATACACCATACTGTCAAGCGCCGTCGATGA
CCTACAATACTTACGGCCTGCAGTAGCTGTTGTGTTGGGCTTTGTCGGCG
CCAAGATCGGAGGAGAGTTTTTAGGTTATGAGATACCTACAGATATATCA
CTAGTTATAATAGTTGGATTATTAGGTGTTGGAATCGCAGCGAGCTTGGC
GGAACGTGGTGACGAGAAAACTCTTTAA
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