prot_H-elongata_contig68040.14429.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig68040.14429.1
Unique Name	prot_H-elongata_contig68040.14429.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	102

Homology

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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: D7FY71_ECTSI (DNA topoisomerase VI subunit A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY71_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 1.880e-60
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = 0

Query:    1 MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 101
            MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMT+HDIKTGKELLQEDFIKK++PWCRELELMIKSKKKAEIQSLSAFGFQYLT  YLPQKLQNGDWV
Sbjct:  539 MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTEHDIKTGKELLQEDFIKKNEPWCRELELMIKSKKKAEIQSLSAFGFQYLTQNYLPQKLQNGDWV 639

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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A6H5KKC7_9PHAE (TP6A_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC7_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 4.430e-60
Identity = 96/101 (95.05%), Postives = 100/101 (99.01%), Query Frame = 0

Query:    1 MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 101
            MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMT+HDIKTGKELLQE+FIKK++PWCRELELMIKSKKKAEIQSLSAFGFQYLTH YLPQKLQNGDWV
Sbjct:  709 MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTEHDIKTGKELLQEEFIKKNEPWCRELELMIKSKKKAEIQSLSAFGFQYLTHNYLPQKLQNGDWV 809

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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A7S3A2U5_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2U5_9RHOD)

HSP 1 Score: 172 bits (435), Expect = 9.970e-53
Identity = 80/101 (79.21%), Postives = 91/101 (90.10%), Query Frame = 0

Query:    1 MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 101
            MSYDSA+LTTPDIKWLGVRPSDLD+YNIPEQCRL MT++DIKTGKELL+EDFI+KS+ W  ELELM+K K+KAEIQ+LS FGFQYLT  YLP+KL  GDWV
Sbjct:   84 MSYDSANLTTPDIKWLGVRPSDLDKYNIPEQCRLPMTEYDIKTGKELLEEDFIRKSEIWVEELELMVKRKEKAEIQALSNFGFQYLTEEYLPRKLAEGDWV 184

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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A7S2DYP9_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DYP9_9EUKA)

HSP 1 Score: 166 bits (419), Expect = 3.200e-51
Identity = 75/101 (74.26%), Postives = 90/101 (89.11%), Query Frame = 0

Query:    1 MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 101
            MSYD+ +LTTPDIKWLGVRPSDL++Y IP+QCRL+M++HDIKTGKELLQEDFIK +  W RELELM+K K KAEIQ+LS+FGFQYLT TYLP+KL+  DW+
Sbjct:   16 MSYDAINLTTPDIKWLGVRPSDLEKYQIPQQCRLEMSEHDIKTGKELLQEDFIKANPTWHRELELMVKMKVKAEIQALSSFGFQYLTQTYLPRKLKEADWI 116

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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A6P5RIF4_PRUAV (DNA topoisomerase 6 subunit A-like n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5RIF4_PRUAV)

HSP 1 Score: 166 bits (420), Expect = 1.440e-50
Identity = 75/101 (74.26%), Postives = 88/101 (87.13%), Query Frame = 0

Query:    1 MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 101
            MSYDSA+LTTPDIKWLG+RPSDLD+Y IPEQCRL MTD DIKTGKE+L+EDF+KK+  W  EL LM+K+K+KAEIQ+LS FGFQYL+ TYLP KLQ  DW+
Sbjct:   75 MSYDSANLTTPDIKWLGIRPSDLDKYKIPEQCRLTMTDQDIKTGKEMLEEDFVKKNPKWVEELTLMVKTKQKAEIQALSTFGFQYLSETYLPLKLQEQDWI 175

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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A7S0AGI7_9STRA (Hypothetical protein n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A7S0AGI7_9STRA)

HSP 1 Score: 166 bits (421), Expect = 2.180e-50
Identity = 72/101 (71.29%), Postives = 93/101 (92.08%), Query Frame = 0

Query:    1 MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 101
            MSYDSASLTTPDIKWLG+RPSDLD+Y++P+QCRLDMT+ DIKTGKEL+QE+FI+K+  W +EL++M+K+KKKAEIQ+LS+FGFQY+T  YLP+K+  GDW+
Sbjct:  100 MSYDSASLTTPDIKWLGLRPSDLDKYDLPDQCRLDMTESDIKTGKELMQEEFIQKNPKWMKELQIMVKTKKKAEIQALSSFGFQYVTEEYLPRKIAEGDWI 200

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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: R7QPA4_CHOCR (TP6A_N domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPA4_CHOCR)

HSP 1 Score: 171 bits (434), Expect = 4.140e-50
Identity = 78/101 (77.23%), Postives = 92/101 (91.09%), Query Frame = 0

Query:    1 MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 101
            MSYDSA+LTTPDIKWLGVRPSDL++Y IPE+CRL MT+HDIKTGKELLQEDFIKK+  W +ELELM+K+K+KAEIQ+LS+FGFQYLT  YLP+KL  GDW+
Sbjct:  293 MSYDSANLTTPDIKWLGVRPSDLEKYGIPERCRLPMTEHDIKTGKELLQEDFIKKNPAWYKELELMVKNKEKAEIQALSSFGFQYLTEEYLPRKLAQGDWI 393

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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A7S0BIJ1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BIJ1_9RHOD)

HSP 1 Score: 170 bits (431), Expect = 5.000e-50
Identity = 79/101 (78.22%), Postives = 91/101 (90.10%), Query Frame = 0

Query:    1 MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 101
            MSYDSA+LTTPDIKWLGVRPSDLD+YNIPEQCRL M+++DIKTGKELL+EDFI+KS+ W  ELELM+K K+KAEIQ+LS FGFQYLT  YLP+KL  GDWV
Sbjct:  257 MSYDSANLTTPDIKWLGVRPSDLDKYNIPEQCRLPMSEYDIKTGKELLEEDFIRKSEIWVEELELMVKRKEKAEIQALSNFGFQYLTEEYLPRKLAEGDWV 357

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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A314YBL1_PRUYE (DNA topoisomerase 6 subunit A n=3 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314YBL1_PRUYE)

HSP 1 Score: 162 bits (411), Expect = 9.060e-50
Identity = 73/101 (72.28%), Postives = 87/101 (86.14%), Query Frame = 0

Query:    1 MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 101
            MSYDSA+LTTPDIKWLG+RP DLD+Y IPEQCRL MTD DIKTGKE+L+EDF+KK+  W  EL LM+K+K+KAEIQ+LS FGFQYL+ TYLP KL+  DW+
Sbjct:   33 MSYDSANLTTPDIKWLGIRPCDLDKYKIPEQCRLTMTDQDIKTGKEMLEEDFVKKNPKWVEELTLMVKTKQKAEIQALSTFGFQYLSETYLPLKLREQDWI 133

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BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Match: A0A7S3A1Y8_9RHOD (Hypothetical protein n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A1Y8_9RHOD)

HSP 1 Score: 172 bits (435), Expect = 1.560e-49
Identity = 80/101 (79.21%), Postives = 91/101 (90.10%), Query Frame = 0

Query:    1 MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQEDFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDWV 101
            MSYDSA+LTTPDIKWLGVRPSDLD+YNIPEQCRL MT++DIKTGKELL+EDFI+KS+ W  ELELM+K K+KAEIQ+LS FGFQYLT  YLP+KL  GDWV
Sbjct:  373 MSYDSANLTTPDIKWLGVRPSDLDKYNIPEQCRLPMTEYDIKTGKELLEEDFIRKSEIWVEELELMVKRKEKAEIQALSNFGFQYLTEEYLPRKLAEGDWV 473

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot

BLAST of mRNA_H-elongata_contig68040.14429.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FY71_ECTSI	1.880e-60	95.05	DNA topoisomerase VI subunit A n=1 Tax=Ectocarpus ...	[more]
A0A6H5KKC7_9PHAE	4.430e-60	95.05	TP6A_N domain-containing protein n=1 Tax=Ectocarpu...	[more]
A0A7S3A2U5_9RHOD	9.970e-53	79.21	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
A0A7S2DYP9_9EUKA	3.200e-51	74.26	Hypothetical protein n=1 Tax=Haptolina brevifila T...	[more]
A0A6P5RIF4_PRUAV	1.440e-50	74.26	DNA topoisomerase 6 subunit A-like n=1 Tax=Prunus ...	[more]
A0A7S0AGI7_9STRA	2.180e-50	71.29	Hypothetical protein n=2 Tax=Mediophyceae TaxID=58...	[more]
R7QPA4_CHOCR	4.140e-50	77.23	TP6A_N domain-containing protein n=1 Tax=Chondrus ...	[more]
A0A7S0BIJ1_9RHOD	5.000e-50	78.22	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
A0A314YBL1_PRUYE	9.060e-50	72.28	DNA topoisomerase 6 subunit A n=3 Tax=Prunus yedoe...	[more]
A0A7S3A1Y8_9RHOD	1.560e-49	79.21	Hypothetical protein n=4 Tax=Rhodosorus marinus Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013048	Meiotic recombination, Spo11	PRINTS	PR01551	SPO11HOMOLOG	coord: 22..46 score: 30.29 coord: 48..62 score: 23.81 coord: 82..101 score: 45.0
None	No IPR available	GENE3D	3.40.1360.10		coord: 1..101 e-value: 5.9E-29 score: 103.1
None	No IPR available	PANTHER	PTHR10848:SF4	DNA TOPOISOMERASE 6 SUBUNIT A	coord: 1..101
IPR002815	Spo11/DNA topoisomerase VI subunit A	PANTHER	PTHR10848	MEIOTIC RECOMBINATION PROTEIN SPO11	coord: 1..101
IPR036078	Spo11/DNA topoisomerase VI subunit A superfamily	SUPERFAMILY	56726	DNA topoisomerase IV, alpha subunit	coord: 2..101

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig68040	contig	H-elongata_contig68040:2281..2995 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig68040.14429.1	mRNA_H-elongata_contig68040.14429.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig68040 2281..3019 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig68040.14429.1 ID=prot_H-elongata_contig68040.14429.1|Name=mRNA_H-elongata_contig68040.14429.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
MSYDSASLTTPDIKWLGVRPSDLDRYNIPEQCRLDMTDHDIKTGKELLQE
DFIKKSDPWCRELELMIKSKKKAEIQSLSAFGFQYLTHTYLPQKLQNGDW
V*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013048	Meiotic_Spo11
IPR002815	Spo11/TopoVI_A
IPR036078	Spo11/TopoVI_A_sf