mRNA_H-elongata_contig67998.14422.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67998.14422.1
Unique NamemRNA_H-elongata_contig67998.14422.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67998.14422.1 vs. uniprot
Match: D7G0C7_ECTSI (Fanconi-associated nuclease n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C7_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.290e-18
Identity = 48/95 (50.53%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:    1 GFPDLVLWRPKGRTGNGVRRRASGRCEAAE----------FGLSWEADGQGWEVEVVEVKSVKDTLSYTQRAWLTLLRNAGVPAKVVRVFAEGDS 255
            GFPD+VLWRPK   G    R   G     E          FGL WE  GQGWEV+VVEVKS  D  S+ Q+AWL  L NA VPA V RV AE ++
Sbjct:  819 GFPDVVLWRPKSDKGVAESRSGGGSGTGEEEGLDWSAKTHFGLGWEGYGQGWEVQVVEVKSKDDITSHAQKAWLMELENARVPAMVTRVLAEKEA 913
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67998.14422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0C7_ECTSI1.290e-1850.53Fanconi-associated nuclease n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67998contigH-elongata_contig67998:2539..2820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue3.4e-16
Seed eggNOG ortholog2880.D7G0C7
EggNOG free text desc.phosphodiesterase I activity
EggNOG OGsKOG2143@1,KOG2143@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size282
Cds size282
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.6127841-CDS-H-elongata_contig67998:2538..28201622931072.6127841-CDS-H-elongata_contig67998:2538..2820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67998 2539..2820 -
1691679686.4521255-CDS-H-elongata_contig67998:2538..28201691679686.4521255-CDS-H-elongata_contig67998:2538..2820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67998 2539..2820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67998.14422.1prot_H-elongata_contig67998.14422.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67998 2539..2820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67998.14422.1

>prot_H-elongata_contig67998.14422.1 ID=prot_H-elongata_contig67998.14422.1|Name=mRNA_H-elongata_contig67998.14422.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
GFPDLVLWRPKGRTGNGVRRRASGRCEAAEFGLSWEADGQGWEVEVVEVK
SVKDTLSYTQRAWLTLLRNAGVPAKVVRVFAEGDSCDGGKKSR*
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mRNA from alignment at H-elongata_contig67998:2539..2820-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67998.14422.1 ID=mRNA_H-elongata_contig67998.14422.1|Name=mRNA_H-elongata_contig67998.14422.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=282bp|location=Sequence derived from alignment at H-elongata_contig67998:2539..2820- (Himanthalia elongata Himel1 dioecious)
GGTTTTCCAGATCTGGTGCTGTGGAGGCCGAAAGGTCGTACGGGAAACGG
AGTTCGCCGCAGAGCTTCAGGGCGTTGCGAAGCGGCGGAGTTCGGACTGA
GCTGGGAGGCTGACGGACAAGGGTGGGAGGTTGAGGTGGTGGAAGTCAAG
TCTGTGAAGGACACCCTGAGCTACACCCAGAGGGCCTGGCTGACGTTGCT
GAGGAACGCCGGAGTTCCGGCCAAGGTTGTTCGCGTTTTTGCCGAGGGGG
ATTCCTGCGACGGTGGAAAGAAGAGTAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig67998:2539..2820-

>mRNA_H-elongata_contig67998.14422.1 ID=mRNA_H-elongata_contig67998.14422.1|Name=mRNA_H-elongata_contig67998.14422.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig67998:2539..2820- (Himanthalia elongata Himel1 dioecious)
GGTTTTCCAGATCTGGTGCTGTGGAGGCCGAAAGGTCGTACGGGAAACGG
AGTTCGCCGCAGAGCTTCAGGGCGTTGCGAAGCGGCGGAGTTCGGACTGA
GCTGGGAGGCTGACGGACAAGGGTGGGAGGTTGAGGTGGTGGAAGTCAAG
TCTGTGAAGGACACCCTGAGCTACACCCAGAGGGCCTGGCTGACGTTGCT
GAGGAACGCCGGAGTTCCGGCCAAGGTTGTTCGCGTTTTTGCCGAGGGGG
ATTCCTGCGACGGTGGAAAGAAGAGTAGGTAGGGTTTTCCAGATCTGGTG
CTGTGGAGGCCGAAAGGTCGTACGGGAAACGGAGTTCGCCGCAGAGCTTC
AGGGCGTTGCGAAGCGGCGGAGTTCGGACTGAGCTGGGAGGCTGACGGAC
AAGGGTGGGAGGTTGAGGTGGTGGAAGTCAAGTCTGTGAAGGACACCCTG
AGCTACACCCAGAGGGCCTGGCTGACGTTGCTGAGGAACGCCGGAGTTCC
GGCCAAGGTTGTTCGCGTTTTTGCCGAGGGGGATTCCTGCGACGGTGGAA
AGAAGAGTAGGTAG
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