prot_H-elongata_contig67994.14420.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig67994.14420.1
Unique Nameprot_H-elongata_contig67994.14420.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length173
Homology
BLAST of mRNA_H-elongata_contig67994.14420.1 vs. uniprot
Match: A0A6H5KBH1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH1_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 2.360e-43
Identity = 69/167 (41.32%), Postives = 108/167 (64.67%), Query Frame = 0
Query:    2 CDEFFGELKERFLVKHQGELKMYTGCAFERDWENGILEINQKAFAENMITQYGITAVSNIPASPGMDLGPKVEGEICGNDEFGDY--RALVGSLMWMSVMTRPDIANALRACVRHSHNPTVRHWKALLRMTAYVNATKEIGLRFVRGSGLRLSVFADADYAVASNER 166
            C+E    L ++F  K+ GE + + GCA ERD + G L I+Q A+ ++M+ ++ + + S IPA+PG DLGPK E E     E G++  R  +GS+MW+S  +RPD++ A+RA  RH+H P  RHW A+ ++  Y+  T+++G+ + RGSGL L+V+ DA YA   + R
Sbjct:   26 CEELLASLNKKFPTKNLGECQWFDGCAIERDADAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPKREDE-----EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLTVYVDASYANTDDRR 187          
BLAST of mRNA_H-elongata_contig67994.14420.1 vs. uniprot
Match: A0A6H5KPT0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPT0_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 1.020e-42
Identity = 74/172 (43.02%), Postives = 111/172 (64.53%), Query Frame = 0
Query:    3 DEFFGELKERFLVKHQGELKMYTGCAFERDWENGILEINQKAFAENMITQYGITAVSNIPASPGMDLGPKVEGEICGNDEFGDY--RALVGSLMWMSVMTRPDIANALRACVRHSHNPTVRHWKALLRMTAYVNATKEIGLRFVRGSGLRLSVFADADYAVASNERRSSTSG 172
            +EF   L ++F  K+ GE + + GCA ERD E G L I+Q A+ ++M+ ++ + + S IPA+PG DLGPK E E     E G++  R  +GS+MW+S  +RPD++ A+RA  RH+H P  RHW A+ ++  Y+  T+++G+ + RGSGL L+V+ DA YA    E R S SG
Sbjct:   27 EEFLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE-----EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA--DTEDRRSVSG 191          
BLAST of mRNA_H-elongata_contig67994.14420.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 3.300e-41
Identity = 74/173 (42.77%), Postives = 111/173 (64.16%), Query Frame = 0
Query:    2 CDEFFGELKERFLVKHQGELKMYTGCAFERDWENGILEINQKAFAENMITQYGITAVSNIPASPGMDLGPKVEGEICGNDEFGDY--RALVGSLMWMSVMTRPDIANALRACVRHSHNPTVRHWKALLRMTAYVNATKEIGLRFVRGSGLRLSVFADADYAVASNERRSSTSG 172
            C+E    L ++F  K+ GE + + GCA ERD E G L I+Q A+ ++M+ ++ + + S IPA+PG DLGPK E E     E G++  R  +GS+MW+S  +RPD++ A+RA  RH+H P  RHW A+ ++  Y+  T+++G+ + RGSGL L+V+ DA YA    E R S SG
Sbjct:  233 CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE-----EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA--DTEDRRSVSG 398          
BLAST of mRNA_H-elongata_contig67994.14420.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 5.960e-41
Identity = 71/165 (43.03%), Postives = 107/165 (64.85%), Query Frame = 0
Query:    2 CDEFFGELKERFLVKHQGELKMYTGCAFERDWENGILEINQKAFAENMITQYGITAVSNIPASPGMDLGPKVEGEICGNDEFGDYRALVGSLMWMSVMTRPDIANALRACVRHSHNPTVRHWKALLRMTAYVNATKEIGLRFVRGSGLRLSVFADADYAVASNER 166
            C E    L + F  K  GE   + GCA ERD E G L I+Q A+ ++++ ++ + + S+IPASPG+D+GPK + E  G       R  +GS+MW+S  +RPDI+ A+RA  RH+H P  RHWKA++++ AY+  T+++G+ + RGSGL L+V+ DA YA A + R
Sbjct:  209 CKELLASLNKAFPTKDLGECVWFDGCAVERDLEAGTLRISQTAYIDSIVNRFDVQSTSSIPASPGVDIGPKRDDESGGE---WPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAEDRR 370          
BLAST of mRNA_H-elongata_contig67994.14420.1 vs. uniprot
Match: A0A6H5JVD4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD4_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 6.520e-41
Identity = 73/173 (42.20%), Postives = 111/173 (64.16%), Query Frame = 0
Query:    2 CDEFFGELKERFLVKHQGELKMYTGCAFERDWENGILEINQKAFAENMITQYGITAVSNIPASPGMDLGPKVEGEICGNDEFGDY--RALVGSLMWMSVMTRPDIANALRACVRHSHNPTVRHWKALLRMTAYVNATKEIGLRFVRGSGLRLSVFADADYAVASNERRSSTSG 172
            C+E    L ++F  K+ GE + + GCA ERD E G L I+Q A+ ++M+ ++ + + S IPA+PG DLGP+ E E     E G++  R  +GS+MW+S  +RPD++ A+RA  RH+H P  RHW A+ ++  Y+  T+++G+ + RGSGL L+V+ DA YA    E R S SG
Sbjct:  169 CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVQSTSRIPATPGADLGPQREDE-----EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA--DTEDRRSVSG 334          
BLAST of mRNA_H-elongata_contig67994.14420.1 vs. uniprot
Match: A0A6H5K274_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K274_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 2.980e-40
Identity = 74/173 (42.77%), Postives = 111/173 (64.16%), Query Frame = 0
Query:    2 CDEFFGELKERFLVKHQGELKMYTGCAFERDWENGILEINQKAFAENMITQYGITAVSNIPASPGMDLGPKVEGEICGNDEFGDY--RALVGSLMWMSVMTRPDIANALRACVRHSHNPTVRHWKALLRMTAYVNATKEIGLRFVRGSGLRLSVFADADYAVASNERRSSTSG 172
            C+E    L ++F  K+ GE + + GCA ERD E G L I+Q A+ ++M+ ++ + + S IPA+PG DLGPK E E     E G++  R  +GS+MW+S  +RPD++ A+RA  RH+H P  RHW A+ ++  Y+  T+++G+ + RGSGL L+V+ DA YA    E R S SG
Sbjct:  457 CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVARFDVQSTSRIPATPGADLGPKREDE-----EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA--DTEDRRSVSG 622          
BLAST of mRNA_H-elongata_contig67994.14420.1 vs. uniprot
Match: A0A6H5JRE9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRE9_9PHAE)

HSP 1 Score: 154 bits (388), Expect = 4.450e-40
Identity = 75/173 (43.35%), Postives = 111/173 (64.16%), Query Frame = 0
Query:    2 CDEFFGELKERFLVKHQGELKMYTGCAFERDWENGILEINQKAFAENMITQYGITAVSNIPASPGMDLGPKVEGEICGNDEFGDY--RALVGSLMWMSVMTRPDIANALRACVRHSHNPTVRHWKALLRMTAYVNATKEIGLRFVRGSGLRLSVFADADYAVASNERRSSTSG 172
            C+E    L + F  K+ GE + + GCA ERD E G L I+Q A+ ++M+ ++ + + S IPA+PG DLGPK E E     E G++  R  +GS+MW+S  +RPD++ A+RA VRH+H P  RHW A+ ++  Y+  T+++G+ + RGSGL L+V+ DA YA    E R S SG
Sbjct:  883 CEELLASLNKMFPTKNLGECEWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE-----EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVVRHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA--DTEDRRSVSG 1048          
BLAST of mRNA_H-elongata_contig67994.14420.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 6.040e-40
Identity = 74/173 (42.77%), Postives = 111/173 (64.16%), Query Frame = 0
Query:    2 CDEFFGELKERFLVKHQGELKMYTGCAFERDWENGILEINQKAFAENMITQYGITAVSNIPASPGMDLGPKVEGEICGNDEFGDY--RALVGSLMWMSVMTRPDIANALRACVRHSHNPTVRHWKALLRMTAYVNATKEIGLRFVRGSGLRLSVFADADYAVASNERRSSTSG 172
            C+E    L ++F  K+ GE + + GCA ERD E G L I+Q A+ ++M+ ++ + + S IPA+PG DLGPK E E     E G++  R  +GS+MW+S  +RPD++ A+RA  RH+H P  RHW A+ ++  Y+  T+++G+ + RGSGL L+V+ DA YA    E R S SG
Sbjct:  946 CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE-----EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA--DTEDRRSVSG 1111          
BLAST of mRNA_H-elongata_contig67994.14420.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 6.180e-40
Identity = 74/173 (42.77%), Postives = 111/173 (64.16%), Query Frame = 0
Query:    2 CDEFFGELKERFLVKHQGELKMYTGCAFERDWENGILEINQKAFAENMITQYGITAVSNIPASPGMDLGPKVEGEICGNDEFGDY--RALVGSLMWMSVMTRPDIANALRACVRHSHNPTVRHWKALLRMTAYVNATKEIGLRFVRGSGLRLSVFADADYAVASNERRSSTSG 172
            C+E    L ++F  K+ GE + + GCA ERD E G L I+Q A+ ++M+ ++ + + S IPA+PG DLGPK E E     E G++  R  +GS+MW+S  +RPD++ A+RA  RH+H P  RHW A+ ++  Y+  T+++G+ + RGSGL L+V+ DA YA    E R S SG
Sbjct: 1325 CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE-----EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA--DTEDRRSVSG 1490          
BLAST of mRNA_H-elongata_contig67994.14420.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 6.200e-40
Identity = 74/173 (42.77%), Postives = 111/173 (64.16%), Query Frame = 0
Query:    2 CDEFFGELKERFLVKHQGELKMYTGCAFERDWENGILEINQKAFAENMITQYGITAVSNIPASPGMDLGPKVEGEICGNDEFGDY--RALVGSLMWMSVMTRPDIANALRACVRHSHNPTVRHWKALLRMTAYVNATKEIGLRFVRGSGLRLSVFADADYAVASNERRSSTSG 172
            C+E    L ++F  K+ GE + + GCA ERD E G L I+Q A+ ++M+ ++ + + S IPA+PG DLGPK E E     E G++  R  +GS+MW+S  +RPD++ A+RA  RH+H P  RHW A+ ++  Y+  T+++G+ + RGSGL L+V+ DA YA    E R S SG
Sbjct: 1345 CEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDE-----EGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYA--DTEDRRSVSG 1510          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67994.14420.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBH1_9PHAE2.360e-4341.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPT0_9PHAE1.020e-4243.02Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTL3_9PHAE3.300e-4142.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE5.960e-4143.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD4_9PHAE6.520e-4142.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K274_9PHAE2.980e-4042.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRE9_9PHAE4.450e-4043.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KSG8_9PHAE6.040e-4042.77Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE6.180e-4042.77Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE6.200e-4042.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 78..170
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 78..170

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67994contigH-elongata_contig67994:172..690 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67994.14420.1mRNA_H-elongata_contig67994.14420.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig67994 172..690 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig67994.14420.1 ID=prot_H-elongata_contig67994.14420.1|Name=mRNA_H-elongata_contig67994.14420.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=173bp
VCDEFFGELKERFLVKHQGELKMYTGCAFERDWENGILEINQKAFAENMI
TQYGITAVSNIPASPGMDLGPKVEGEICGNDEFGDYRALVGSLMWMSVMT
RPDIANALRACVRHSHNPTVRHWKALLRMTAYVNATKEIGLRFVRGSGLR
LSVFADADYAVASNERRSSTSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like