mRNA_H-elongata_contig6798.14416.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig6798.14416.1
Unique NamemRNA_H-elongata_contig6798.14416.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A2N9F271_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F271_FAGSY)

HSP 1 Score: 73.6 bits (179), Expect = 9.300e-14
Identity = 35/63 (55.56%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 VMKLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 189
            V KL+ +LYGL Q+P AWF    S LL IGFVA+ ADP +++LR+G  VF L LY DD+++TG
Sbjct:  398 VCKLQKSLYGLKQAPRAWFERFTSHLLTIGFVASTADPSLFVLRTGSTVFYLLLYVDDIILTG 460
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BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A2N9FIJ5_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FIJ5_FAGSY)

HSP 1 Score: 71.2 bits (173), Expect = 6.100e-13
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 VMKLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 189
            V KL+ +LYGL Q+P AWF    S LL IGFVA+ ADP +++LR+G  V  L LY DD+++TG
Sbjct:  683 VCKLQKSLYGLKQAPRAWFERFTSHLLTIGFVASTADPSLFVLRTGSTVLYLLLYVDDIILTG 745
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BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A2N9F3A0_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F3A0_FAGSY)

HSP 1 Score: 68.9 bits (167), Expect = 3.970e-12
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 VMKLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 189
            V KL+ +LYGL Q+P AWF    S LL IGFVA+ ADP +++LR+G  V  L LY DD+++T 
Sbjct:  701 VCKLQKSLYGLKQAPRAWFERFTSHLLTIGFVASTADPSLFVLRTGSTVLYLLLYVDDIILTS 763
[Close]
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: UPI00142E428A (uncharacterized protein LOC108871170 n=2 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E428A)

HSP 1 Score: 68.2 bits (165), Expect = 7.440e-12
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 VMKLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 189
            V++L  ALYGL Q+P AW+G IDS  L  GF  +  D  +Y+++ G DV I++LY DD+++TG
Sbjct:  987 VLRLHKALYGLKQAPRAWYGRIDSYFLQNGFERSMNDAALYIMKQGGDVLIVSLYVDDIIITG 1049
[Close]
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.740e-11
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 VMKLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 189
            V KL+ +LYGL+QSPA W   +D SL   G+  T +DP +Y+  SG  + ILT+Y DD+L+TG
Sbjct:    2 VYKLERSLYGLSQSPALWSDTLDKSLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITG 64
[Close]
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A6D2LPC9_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2LPC9_9BRAS)

HSP 1 Score: 64.7 bits (156), Expect = 3.120e-11
Identity = 29/63 (46.03%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 VMKLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 189
            V+ L+ ALYGL Q+P AW+G IDS  L  GF  +  D  +Y+++   DV I++LY DD+++TG
Sbjct:  124 VLLLRKALYGLKQAPRAWYGRIDSYFLQSGFQRSMNDAALYVMKKDKDVLIVSLYVDDLVITG 186
[Close]
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A6H5KTY2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY2_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.490e-11
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 VMKLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 189
            V KL+ +LYGL+QSPA W   +D SL   G+  T +DP +Y+  SG  + ILT+Y DD+L+TG
Sbjct:  329 VYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVILTVYVDDILITG 391
[Close]
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A2N9EGA9_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EGA9_FAGSY)

HSP 1 Score: 65.9 bits (159), Expect = 4.760e-11
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:   10 LKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 189
            L  ++YGL Q+P AWF +  S LL IGF+A+ ADP ++L + G  V  L LY DD+++TG
Sbjct:  160 LHKSIYGLRQAPRAWFEKFSSHLLTIGFIASQADPSLFLYKHGSTVLFLLLYVDDIIITG 219
[Close]
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A5B6WLL2_9ROSI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6WLL2_9ROSI)

HSP 1 Score: 65.9 bits (159), Expect = 4.780e-11
Identity = 30/62 (48.39%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:    1 VMKLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVT 186
            V  LK ALYGL Q+P AW+ ++D  LL+I FV + ++  +Y+ +SG ++FI++LY DD+LVT
Sbjct:  312 VFLLKKALYGLKQAPRAWYNKVDEHLLNIDFVKSLSESTLYVKKSGTNLFIVSLYVDDMLVT 373
[Close]
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 4.820e-11
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 VMKLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFILTLYFDDVLVTG 189
            V KL+ +LYGLAQSP  W+  ID  L+ IGF  T +DP +Y+  SG  + ILTLY +D+L++G
Sbjct:  523 VYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISG 585
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig6798.14416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9F271_FAGSY9.300e-1455.56Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9FIJ5_FAGSY6.100e-1353.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9F3A0_FAGSY3.970e-1252.38Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00142E428A7.440e-1247.62uncharacterized protein LOC108871170 n=2 Tax=Brass... [more]
A0A6H5KRT7_9PHAE1.740e-1149.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2LPC9_9BRAS3.120e-1146.03Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTY2_9PHAE3.490e-1149.21Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9EGA9_FAGSY4.760e-1148.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5B6WLL2_9ROSI4.780e-1148.39Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5K9R3_9PHAE4.820e-1150.79Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig6798contigH-elongata_contig6798:412..600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.8
Seed ortholog evalue6.6e-08
Seed eggNOG ortholog3712.Bo8g037990.1
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37YGB@33090,3GNQA@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.1746502-UTR-H-elongata_contig6798:411..4141622931072.1746502-UTR-H-elongata_contig6798:411..414Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6798 412..414 +
1691679686.2798533-UTR-H-elongata_contig6798:411..4141691679686.2798533-UTR-H-elongata_contig6798:411..414Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig6798 412..414 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.1954281-CDS-H-elongata_contig6798:414..6001622931072.1954281-CDS-H-elongata_contig6798:414..600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6798 415..600 +
1691679686.2896507-CDS-H-elongata_contig6798:414..6001691679686.2896507-CDS-H-elongata_contig6798:414..600Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig6798 415..600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig6798.14416.1prot_H-elongata_contig6798.14416.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig6798 415..600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig6798.14416.1

>prot_H-elongata_contig6798.14416.1 ID=prot_H-elongata_contig6798.14416.1|Name=mRNA_H-elongata_contig6798.14416.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MKLKSALYGLAQSPAAWFGEIDSSLLDIGFVATYADPYIYLLRSGMDVFI
LTLYFDDVLVTG
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mRNA from alignment at H-elongata_contig6798:412..600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig6798.14416.1 ID=mRNA_H-elongata_contig6798.14416.1|Name=mRNA_H-elongata_contig6798.14416.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig6798:412..600+ (Himanthalia elongata Himel1 dioecious)
GTGATGAAGCTCAAGTCAGCCTTATATGGGCTGGCTCAAAGTCCGGCGGC
CTGGTTCGGAGAGATAGACAGTTCTCTCCTAGATATCGGGTTCGTAGCAA
CTTACGCAGACCCCTATATCTACCTGCTTCGCTCTGGGATGGACGTCTTC
ATCCTTACGCTGTACTTTGACGACGTCCTAGTCACTGGT
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Coding sequence (CDS) from alignment at H-elongata_contig6798:412..600+

>mRNA_H-elongata_contig6798.14416.1 ID=mRNA_H-elongata_contig6798.14416.1|Name=mRNA_H-elongata_contig6798.14416.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig6798:412..600+ (Himanthalia elongata Himel1 dioecious)
ATGAAGCTCAAGTCAGCCTTATATGGGCTGGCTCAAAGTCCGGCGGCCTG
GTTCGGAGAGATAGACAGTTCTCTCCTAGATATCGGGTTCGTAGCAACTT
ACGCAGACCCCTATATCTACCTGCTTCGCTCTGGGATGGACGTCTTCATC
CTTACGCTGTACTTTGACGACGTCCTAGTCACTGGTATGAAGCTCAAGTC
AGCCTTATATGGGCTGGCTCAAAGTCCGGCGGCCTGGTTCGGAGAGATAG
ACAGTTCTCTCCTAGATATCGGGTTCGTAGCAACTTACGCAGACCCCTAT
ATCTACCTGCTTCGCTCTGGGATGGACGTCTTCATCCTTACGCTGTACTT
TGACGACGTCCTAGTCACTGGT
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