prot_H-elongata_contig67972.14414.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig67972.14414.1
Unique Nameprot_H-elongata_contig67972.14414.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length93
Homology
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: A0A6H5K3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X8_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 6.810e-30
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 0
Query:    1 MAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGPGSGHTPRWVASGGGEGFLYIWDPRNSRSPVCQL 82
            +A S+DGN+L+SGG+D+K IVWSP+SRRVVATL+ H S V+ V VD G  SG  PRW+ASGGGEGFL +WDPRN  SPV  L
Sbjct:  474 LACSSDGNLLVSGGDDHKVIVWSPQSRRVVATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATL 555          
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: D7G1I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I6_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 8.820e-28
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 0
Query:    1 MAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGPGSGHTPRWVASGGGEGFLYIWDPRNSRSPVCQL 82
            +A S+DG +L+SGG+D+K IVWSP+SRR +ATL+ H S V+ V VD G  SG  PRW+ASGGGEGFL +WDPRN  SPV  L
Sbjct:  327 LACSSDGKLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVAIL 408          
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: A0A085LRP0_9BILA (Uncharacterized protein n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085LRP0_9BILA)

HSP 1 Score: 50.8 bits (120), Expect = 2.920e-5
Identity = 22/73 (30.14%), Postives = 42/73 (57.53%), Query Frame = 0
Query:    1 MAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGPGSGHTPRWVASGGGEGFLYIWDPR 73
            ++ +  G ++ISGG DN+A+VW+ +    V  L+GH  +V +V ++      H   ++A+G   G + +W+ R
Sbjct:   64 LSIAIKGYLVISGGGDNRAVVWNAQDGEFVTALEGHNDSVAEVHLN------HNQAYLATGDMSGVVMVWETR 130          
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: A0A8C8RJR8_9SAUR (Elongator complex protein 2 n=3 Tax=Testudines TaxID=8459 RepID=A0A8C8RJR8_9SAUR)

HSP 1 Score: 50.4 bits (119), Expect = 4.230e-5
Identity = 29/80 (36.25%), Postives = 42/80 (52.50%), Query Frame = 0
Query:   10 LISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVL-VDQGPGSGHTPRWVASGGGEGFLYIWDPRNSRSPVCQLLVGGAD 88
            L++ G  N  +++ PK R VVATL GH   VN V  V    GS  T   + SGG +  L +W+ +N +   C  L G ++
Sbjct:   29 LVAFGSCNSVVLYDPKKRTVVATLNGHTGRVNCVQWVPSKDGSPETE--LISGGSDKKLIVWETQNKQHVKCLNLEGHSE 106          
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: A0A1B6IUN7_9HEMI (Uncharacterized protein n=2 Tax=Homalodisca TaxID=139475 RepID=A0A1B6IUN7_9HEMI)

HSP 1 Score: 49.7 bits (117), Expect = 7.500e-5
Identity = 24/83 (28.92%), Postives = 44/83 (53.01%), Query Frame = 0
Query:    6 DGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGPGSGHTPRWVASGGGEGFLYIWDPRNSRSPVCQLLVGGAD 88
            +GN+ ++GGED KA VW  ++  VV   +GH+ +V  V         H  +++A+G   G++ +W      +  C ++  G+D
Sbjct:   88 NGNLAVTGGEDEKAYVWVTQTGEVVFECEGHKDSVTFVAFS------HDGKYLATGDISGYIQVW---KVATKTCIMVQVGSD 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K3X8_9PHAE6.810e-3065.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1I6_ECTSI8.820e-2862.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A085LRP0_9BILA2.920e-530.14Uncharacterized protein n=2 Tax=Trichuris suis Tax... [more]
A0A8C8RJR8_9SAUR4.230e-536.25Elongator complex protein 2 n=3 Tax=Testudines Tax... [more]
A0A1B6IUN7_9HEMI7.500e-528.92Uncharacterized protein n=2 Tax=Homalodisca TaxID=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 26..71
e-value: 1.4E-5
score: 34.6
IPR001680WD40 repeatPFAMPF00400WD40coord: 29..71
e-value: 0.0036
score: 18.1
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 1..32
score: 10.308
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..88
e-value: 2.8E-16
score: 61.8
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..80
score: 14.846
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..82

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67972contigH-elongata_contig67972:418..2182 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67972.14414.1mRNA_H-elongata_contig67972.14414.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig67972 114..2992 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig67972.14414.1 ID=prot_H-elongata_contig67972.14414.1|Name=mRNA_H-elongata_contig67972.14414.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGPG
SGHTPRWVASGGGEGFLYIWDPRNSRSPVCQLLVGGADEGRG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf