mRNA_H-elongata_contig67972.14414.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67972.14414.1
Unique NamemRNA_H-elongata_contig67972.14414.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: A0A6H5K3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X8_9PHAE)

HSP 1 Score: 173 bits (438), Expect = 1.130e-46
Identity = 80/115 (69.57%), Postives = 92/115 (80.00%), Query Frame = 3 
Query:    3 TGGTDWTVRLWDVEKVCELGRLSFRGHSRQVTSMAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGPGSGHTPRWVASGGGEGFLYIWDPRNSRSPVCQL 347
            TGGTDW+VRLWDV K  ELGRLSF GHS QV S+A S+DGN+L+SGG+D+K IVWSP+SRRVVATL+ H S V+ V VD G  SG  PRW+ASGGGEGFL +WDPRN  SPV  L
Sbjct:  441 TGGTDWSVRLWDVVKSRELGRLSFMGHSHQVRSLACSSDGNLLVSGGDDHKVIVWSPQSRRVVATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVATL 555
[Close]
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: D7G1I6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I6_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.290e-44
Identity = 76/115 (66.09%), Postives = 89/115 (77.39%), Query Frame = 3 
Query:    3 TGGTDWTVRLWDVEKVCELGRLSFRGHSRQVTSMAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGPGSGHTPRWVASGGGEGFLYIWDPRNSRSPVCQL 347
            TGGTDW+VRLWDV K  ELGRLSF GHS  V S+A S+DG +L+SGG+D+K IVWSP+SRR +ATL+ H S V+ V VD G  SG  PRW+ASGGGEGFL +WDPRN  SPV  L
Sbjct:  294 TGGTDWSVRLWDVVKFRELGRLSFMGHSHPVRSLACSSDGKLLVSGGDDHKVIVWSPQSRRPLATLKSHASAVHGVAVDPGTHSGDAPRWIASGGGEGFLLVWDPRNFGSPVAIL 408
[Close]
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: A0A8H7ER42_9FUNG (Uncharacterized protein n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ER42_9FUNG)

HSP 1 Score: 66.6 bits (161), Expect = 4.920e-9
Identity = 42/103 (40.78%), Postives = 58/103 (56.31%), Query Frame = 3 
Query:    3 TGGTDWTVRLWDV--EKVCELGRL-SFRGHSRQVTSMAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGPG-----SGHTPR-WVASG 284
            TGGTD  V +W +  +K  +   L S RGHS  VTS+ +S   ++L+SG ED  AIVW     + V TL GHES+V+ V ++   G     SG+  R W  +G
Sbjct: 2807 TGGTDNVVCMWKIKQDKNTDFTLLESLRGHSAPVTSITSSRSYSILVSGSEDKTAIVWDLNRMQYVRTLNGHESSVDIVRINDTTGDIITCSGNIIRIWTVNG 2909
[Close]
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: A0A1X0R0E3_RHIZD (Beach-domain-containing protein n=2 Tax=Rhizopus microsporus TaxID=58291 RepID=A0A1X0R0E3_RHIZD)

HSP 1 Score: 65.5 bits (158), Expect = 1.150e-8
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 3 
Query:    3 TGGTDWTVRLWDVEKVCELGRL---SFRGHSRQVTSMAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGPG-----SGHTPR-WVASG 284
            TGGTD  V +W V+    L  +   S +GH+  VT++ AS   +V+++G ED  AI+W   +++ V +L+GHES+V  + ++   G     SG+T R W  +G
Sbjct: 1446 TGGTDSLVCIWKVKNQKNLEFVLSESLKGHTDVVTTITASRQYSVVVTGSEDKTAIIWDLNTKKYVNSLRGHESSVQHIAINHTTGDIMTCSGNTIRLWTING 1548
[Close]
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: A0A2G4T262_RHIZD (Beach-domain-containing protein n=1 Tax=Rhizopus microsporus ATCC 52813 TaxID=1340429 RepID=A0A2G4T262_RHIZD)

HSP 1 Score: 65.5 bits (158), Expect = 1.200e-8
Identity = 37/103 (35.92%), Postives = 60/103 (58.25%), Query Frame = 3 
Query:    3 TGGTDWTVRLWDVEKVCELGRL---SFRGHSRQVTSMAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGPG-----SGHTPR-WVASG 284
            TGGTD  V +W V+    L  +   S +GH+  VT++ AS   +V+++G ED  AI+W   +++ V +L+GHES+V  + ++   G     SG+T R W  +G
Sbjct: 2269 TGGTDSLVCIWKVKNQKNLEFVLSESLKGHTDVVTTITASRQYSVVVTGSEDKTAIIWDLNTKKYVNSLRGHESSVQHIAINHTTGDIMTCSGNTIRLWTING 2371
[Close]
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: A0A3G2S5K4_9BASI (WD repeat-containing protein 70 n=2 Tax=Malassezia restricta TaxID=76775 RepID=A0A3G2S5K4_9BASI)

HSP 1 Score: 62.4 bits (150), Expect = 1.020e-7
Identity = 41/130 (31.54%), Postives = 62/130 (47.69%), Query Frame = 3 
Query:    3 TGGTDWTVRLWDV-----EKVCELGRLSFRGHSRQVTSMAASTDGNVLISGGEDNKAIVWSPKSR--RVVATLQGHESTVNDVLVDQGPGSGHTPRWVASGGGEGFLYIWDPRNSRSPVC--QLLVGGAD 365
            TGG+D T+RLWDV     +K   + R   RG   QV++   + D   +++ G+D    +W+      R  AT+QG  +             G+T   +AS G +  L +WD R  RSP+   Q L  G+D
Sbjct:  188 TGGSDSTIRLWDVNHKASQKTVIVLRSKNRGTKTQVSAATYTPDARAIVATGQDGAMYMWATNGNYARPSATVQGAHTASQSATSLAASSDGYT---LASRGADDSLKLWDLRQLRSPLAEKQELPNGSD 314
[Close]
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: A0A8H8CS82_PSICU (Uncharacterized protein n=2 Tax=Psilocybe cubensis TaxID=181762 RepID=A0A8H8CS82_PSICU)

HSP 1 Score: 61.6 bits (148), Expect = 1.850e-7
Identity = 42/150 (28.00%), Postives = 65/150 (43.33%), Query Frame = 3 
Query:    6 GGTDWTVRLWDVEKVCELGRLSFRGHSRQVTSMAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGPGSGHTPRWVASGGGEGFLYIWDPRNS---------RSPVCQLL-VGGADEGRG*VVVRCRRDHNSRLVD 425
            G  D + R+WD+E   E G   F GHS    ++A S  GN +++GG DNK ++W    RR    L     + +  ++     S   P  VAS G +G   IW+ +           R P C +  +  +    G + V C  D   R+ +
Sbjct:   41 GHDDNSTRVWDLESGEEDGE-PFVGHSHITLAVAVSKTGNDVVTGGSDNKVLLWKESDRRTHKVLFAGPFSGSSGILSVAFSSTAYPMLVASSGTDGVTNIWEVKTDAYSNPKRAIRIPGCTITSIQFSPSHSGVIAVTCTLDKKIRIFN 189
[Close]
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: A0A2G5BCR3_COERN (PFU-domain-containing protein n=1 Tax=Coemansia reversa (strain ATCC 12441 / NRRL 1564) TaxID=763665 RepID=A0A2G5BCR3_COERN)

HSP 1 Score: 61.6 bits (148), Expect = 2.060e-7
Identity = 34/78 (43.59%), Postives = 44/78 (56.41%), Query Frame = 3 
Query:    3 TGGTDWTVRLWDVEKVCELGRLSFRGHSRQVTSMAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLV 236
            TGG D  + +WD E +     +   GH   V ++AASTDGNVL+SG  D  A VW+    +   TL GH + V DVLV
Sbjct:   79 TGGADGRICVWDAEDLAAPTAV-LEGHKDNVCALAASTDGNVLVSGSWDGTARVWT--DGKCTHTLTGHAAAVWDVLV 153
[Close]
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: A7SB74_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SB74_NEMVE)

HSP 1 Score: 60.8 bits (146), Expect = 2.580e-7
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:   60 GRLSFRGHSRQVTSMAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGP 248
            G L+F GHS+QVTS+A + DG VL+SG  DN A VW  +SR+ + TL  H+  V +V + + P
Sbjct:  256 GALNFTGHSKQVTSLAVTMDGTVLLSGSNDNTARVWHIQSRQSIRTLT-HKGAVTNVQIIRRP 317
[Close]
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Match: UPI0013901983 (WD repeat-containing protein 18 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI0013901983)

HSP 1 Score: 60.8 bits (146), Expect = 3.120e-7
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:   60 GRLSFRGHSRQVTSMAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGP 248
            G L+F GHS+QVTS+A + DG VL+SG  DN A VW  +SR+ + TL  H+  V +V + + P
Sbjct:  262 GALNFTGHSKQVTSLAVTMDGTVLLSGSNDNTARVWHIQSRQSIRTLT-HKGAVTNVQIIRRP 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67972.14414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K3X8_9PHAE1.130e-4669.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1I6_ECTSI2.290e-4466.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8H7ER42_9FUNG4.920e-940.78Uncharacterized protein n=1 Tax=Apophysomyces ossi... [more]
A0A1X0R0E3_RHIZD1.150e-835.92Beach-domain-containing protein n=2 Tax=Rhizopus m... [more]
A0A2G4T262_RHIZD1.200e-835.92Beach-domain-containing protein n=1 Tax=Rhizopus m... [more]
A0A3G2S5K4_9BASI1.020e-731.54WD repeat-containing protein 70 n=2 Tax=Malassezia... [more]
A0A8H8CS82_PSICU1.850e-728.00Uncharacterized protein n=2 Tax=Psilocybe cubensis... [more]
A0A2G5BCR3_COERN2.060e-743.59PFU-domain-containing protein n=1 Tax=Coemansia re... [more]
A7SB74_NEMVE2.580e-747.62Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
UPI00139019833.120e-747.62WD repeat-containing protein 18 n=1 Tax=Nematostel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67972contigH-elongata_contig67972:114..2992 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score114.0
Seed ortholog evalue3.8e-23
Seed eggNOG ortholog2880.D7G1I6
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size684
Cds size279
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67972.14414.1prot_H-elongata_contig67972.14414.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67972 418..2182 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.9764898-UTR-H-elongata_contig67972:113..4171622931071.9764898-UTR-H-elongata_contig67972:113..417Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67972 114..417 -
1691679686.1937444-UTR-H-elongata_contig67972:113..4171691679686.1937444-UTR-H-elongata_contig67972:113..417Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67972 114..417 -
1622931072.0520556-UTR-H-elongata_contig67972:2182..22601622931072.0520556-UTR-H-elongata_contig67972:2182..2260Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67972 2183..2260 -
1691679686.235854-UTR-H-elongata_contig67972:2182..22601691679686.235854-UTR-H-elongata_contig67972:2182..2260Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67972 2183..2260 -
1622931072.0669363-UTR-H-elongata_contig67972:2969..29921622931072.0669363-UTR-H-elongata_contig67972:2969..2992Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67972 2970..2992 -
1691679686.2448347-UTR-H-elongata_contig67972:2969..29921691679686.2448347-UTR-H-elongata_contig67972:2969..2992Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig67972 2970..2992 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931072.003537-CDS-H-elongata_contig67972:417..4591622931072.003537-CDS-H-elongata_contig67972:417..459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67972 418..459 -
1691679686.2074234-CDS-H-elongata_contig67972:417..4591691679686.2074234-CDS-H-elongata_contig67972:417..459Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67972 418..459 -
1622931072.0200531-CDS-H-elongata_contig67972:626..8091622931072.0200531-CDS-H-elongata_contig67972:626..809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67972 627..809 -
1691679686.2186062-CDS-H-elongata_contig67972:626..8091691679686.2186062-CDS-H-elongata_contig67972:626..809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67972 627..809 -
1622931072.036543-CDS-H-elongata_contig67972:2128..21821622931072.036543-CDS-H-elongata_contig67972:2128..2182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67972 2129..2182 -
1691679686.2272904-CDS-H-elongata_contig67972:2128..21821691679686.2272904-CDS-H-elongata_contig67972:2128..2182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67972 2129..2182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67972.14414.1

>prot_H-elongata_contig67972.14414.1 ID=prot_H-elongata_contig67972.14414.1|Name=mRNA_H-elongata_contig67972.14414.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=93bp
MAASTDGNVLISGGEDNKAIVWSPKSRRVVATLQGHESTVNDVLVDQGPG
SGHTPRWVASGGGEGFLYIWDPRNSRSPVCQLLVGGADEGRG*
back to top

mRNA from alignment at H-elongata_contig67972:114..2992-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67972.14414.1 ID=mRNA_H-elongata_contig67972.14414.1|Name=mRNA_H-elongata_contig67972.14414.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2879bp|location=Sequence derived from alignment at H-elongata_contig67972:114..2992- (Himanthalia elongata Himel1 dioecious)
CCACGGGCGGCACTGATTGGACGGCGAGTATTTGCTTTATTCTTTACAGG
GTTCTTTTAAGAAATCCAGTTACAAGTGCTGAGCAAACCAACCTTGACTC
TTCAGTCTCTTTGTCAAGTCGCCAAGTCCTATTTTGGCTTCGAATTGTCA
CGGGAGCCCCTAGCTGCTTTACGCATACGTTATTCGTCCCTGAGGCATTT
TGGTCCAGCGCTCTCTTACTCAAGTACCTACATAAGAAACGTACAGTCTT
GGCGGTTCTATGTGCGGCACATTGTCTTAGGAGCTTGTGCGTGGGTTGCT
TCCTGAGAAAAGGCAAACATTATTCAACAGACGAGTAATACATGTTCCGC
TACTGCACGGTCTCTTTGGCTACTTGACACTAGCCACCCCGCCACGATAG
AGCATCGGAGGCGGCCTACGAGATTAATAAGTCCACATATTTGAGCAAAA
TTAAGCGTTTGATCAAAAATAAACATTTTAGCTCATATGCTGATAGCATA
CTGGTAGGTTTTGGCAACGCACTCTAGTCTTCCAGATACGAACTCGGCAT
CCAATGGCAGCGCATGTTTTCTTCCCCGCCCAAATCTAGCAGCTTGGTTT
TGTCACGAGTTCTGTACGAACAATCAACCTATAGAAGGTCAATAAAAGCG
ATACACTACACTGTTGTGGTACGTTTCAACCGATGTAAATATTTAGGACC
TTTCAATATTTATCTTGCGCGGTCATAAAAAGGTGCGCCTTTGGGACGTC
GAGAAGGTTTGCGAGCTGGGCCGCCTTTCCTTCAGGGGCCACAGCCGCCA
GGTCACATCAATGGCGGCCTCTACTGACGGGAACGTCCTGATCAGCGGAG
GTGAAGACAATAAGGTGGGCTGCGCCGCTTTCCCCGCCCTGAAATAGTAA
TCCTGCCTCAATCCCCCTACCCCCCTCTACTCTAACTACGAATAACTTCT
GCCCAGGCAGTTATGGTACGCATCGAATGATCACCTCCTCAGTCATTGCC
CTTTCGGTGGGCAAAAGCGCCTATTTTTGTATCGAACCTCTTCCCGGGGA
TGGCGGCGACCCAGATACCGAAGGCGTTGTTTGACTGGTACAGGTGGGCT
TATTAATAGTAATCCCGCTTTCCCGTGTACCTCGCGCGTGCGCCGGGAAT
GAAATACGTTGAATAAGAGACCGCCATGGGCATAAATTAACACATATCGG
CATGCAACCACCGCCGCACTGTCATTGTTCGCCTCATATCCTGCACTACC
AGTTGAGCAGAAGTCCTGAGTTTGATTATTGGGGTAAAGCATGGTTGTAA
CCGAAAGAGTGTAAACATGCAGGGAGCAATATCAAACCTTCGGGTGAAGC
CGTGTGAGAGCGCTGGCATTGCTTCGCGATAACCAAGGACACGCGTGAAC
CGATCAAAAATGGGTAGATTCCTTAGGACCACGGAGGTGGGATCAGTAAC
CTAGCACGTTGAAGCCCCATCGGCAGAGAGCAAGAACACACTATTGGCAA
AAGCTACTGCTGTGCCTATCGAAAGATATTCCCTAGATAGCTTTAAGCAC
CGTGTATACATGCTAATCAGCGCACTGATGGCATGTTACTAGTGGTATGT
CAAAGTAGGGTCCTTGTTTAAATTAATTGTTGCTGAGACTTCCGGGTACC
CCATCTTCTACATGTTTCTACCGTGATGCCCCCGCCATTTCAACCTCATC
GTGGTGAAGATCATGAAGAACGCCGTGGTTGAGCAAACCAAATGGGTTTT
CCACCGCGTCGTTTCTGCTTCTCTCGGAACGCTGCCTATTTTGTTTAGTT
TTTAGCAGCGCGTAGAACAATCTACCGGGATGCCAACGCCATTTCAACAT
CATCGTAGTGAAGATAATAAAAACGCCGTGGTAGGGAAAACCAATTTCGG
TTGTTCCACCGCGTCCTTTCTGCTCCTCTCGGAACGCTTCATATTTTGTT
TATGTTTTCGCAGCGCGTAGAACAATCAATCCACTCAAGCTTTGTAGGAA
AAAACAAAAGCAATACGCATGGTAATCGAGCTTCCGCACTCACCCTTTCG
CGCAGCCGCCACTGTGACCCATAAAGATTGCGGGTGCAGTGTGCTGCACG
TCGAACGGTCGGATGATAACCCACTTTGACCTGCTCGCTATTGACCCTCC
GCCGTGCGCTTCCGGGTGGCACACATCAAAAAGGCCATCGTGTGGTCGCC
AAAAAGCCGGAGGGTGGTCGCCACTCTTCAGGGCCATGAGAGCACCGTGA
ACGACGTCCTCGTTGACCAGGGGCCGGGTTCTGGCCACACACCCCGCTGG
GTCGCCTCCGGTGGGGGCGAAGGCTTCCTCTACATTTGGGACCCCCGTAA
CTCGCGCTCCCCGGTAGCTACTCTGTTAGGGGAGCCCTCACACGGCGCAT
CAACCGCGGCTGGTGGCCTCGCGGGGCTCTCTCTCCACGAGGCAGGCCAC
CTTCTCGCTGGGGCCGAGGCAAAGTTCCGAGGCGAATCTGGCAGGTGGGA
AGGTGATACGACGGGTGCGACAATGCTGAAAAGTGTCAACTGCTTGTCGG
CGGGGCGGACGAGGGACGGGGTTGAGTGGTTGTTCGGTGCCGGAGAGACC
ACAATTCGCGCTTGGTGGATGAGGGATGGGATGTGGTACGGAGGGGACGC
GCTCCCCGGGAGGGGTATGCGCGGTGTGGCCAGTATGTCTGTCTTGGAAT
AAGTACATCAAATACATTCAAAGGTGGCAAGAAGAACATATGTTCATTTG
TTCCAAGTAGGTAAGGTAATAGGGAGGGCGGTCTTATTGCCTGGATTTCT
CCATAGCACGATAGGGTATAATGCCGCAGTGACTTTTGGGGGTGTAGAGA
GTGAAACACGATTCTTTTTTTCGGGCTGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig67972:114..2992-

>mRNA_H-elongata_contig67972.14414.1 ID=mRNA_H-elongata_contig67972.14414.1|Name=mRNA_H-elongata_contig67972.14414.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=558bp|location=Sequence derived from alignment at H-elongata_contig67972:114..2992- (Himanthalia elongata Himel1 dioecious)
ATGGCGGCCTCTACTGACGGGAACGTCCTGATCAGCGGAGGTGAAGACAA
TAAGATGGCGGCCTCTACTGACGGGAACGTCCTGATCAGCGGAGGTGAAG
ACAATAAGGCCATCGTGTGGTCGCCAAAAAGCCGGAGGGTGGTCGCCACT
CTTCAGGGCCATGAGAGCACCGTGAACGACGTCCTCGTTGACCAGGGGCC
GGGTTCTGGCCACACACCCCGCTGGGTCGCCTCCGGTGGGGGCGAAGGCT
TCCTCTACATTTGGGACCCCCGTAACTCGCGCTCCCCGGTAGCCATCGTG
TGGTCGCCAAAAAGCCGGAGGGTGGTCGCCACTCTTCAGGGCCATGAGAG
CACCGTGAACGACGTCCTCGTTGACCAGGGGCCGGGTTCTGGCCACACAC
CCCGCTGGGTCGCCTCCGGTGGGGGCGAAGGCTTCCTCTACATTTGGGAC
CCCCGTAACTCGCGCTCCCCGGTATGTCAACTGCTTGTCGGCGGGGCGGA
CGAGGGACGGGGTTGATGTCAACTGCTTGTCGGCGGGGCGGACGAGGGAC
GGGGTTGA
back to top