mRNA_H-elongata_contig67936.14406.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig67936.14406.1
Unique NamemRNA_H-elongata_contig67936.14406.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig67936.14406.1 vs. uniprot
Match: D8LF83_ECTSI (Putative respiratory burst oxidase homolog protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF83_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 4.160e-37
Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:    4 VETTLYYDNVLLICTGAGVTPALAVAERFSRKKNIHLMWIARDHGMMALFEKQLRLVNSTVHLTGKPTEEVKRAMSRLFSKS 249
            +ETTL+YDNVLLICTGAG+TPA+AVA+RF+ KKNIHLMWIARDHGMMALFEKQLR+V STVHLTG P EE+K AMS+L S+S
Sbjct:  421 IETTLFYDNVLLICTGAGITPAVAVADRFAAKKNIHLMWIARDHGMMALFEKQLRMVTSTVHLTGNPDEEIKDAMSKLLSRS 502
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BLAST of mRNA_H-elongata_contig67936.14406.1 vs. uniprot
Match: D7G8C4_ECTSI (Putative respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 9.210e-28
Identity = 49/86 (56.98%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    4 VETTLYYDNVLLICTGAGVTPALAVAERFSRKKNIHLMWIARDHGMMALFEKQLRLVNSTVHLTGKPTEEVKRAMSRLFSKSKYTP 261
            +E ++Y++NV+++CTGAG+TPA+ +A+  S+KKN+HLMW++R+ GM+A FEKQLR VNSTVHLTGKPTE+ K+ ++ L + SK  P
Sbjct:  293 LEKSVYFENVIMVCTGAGITPAICLADMLSKKKNVHLMWLSREAGMVATFEKQLRRVNSTVHLTGKPTEKTKQRLTDLLAHSKAPP 378
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BLAST of mRNA_H-elongata_contig67936.14406.1 vs. uniprot
Match: A0A6H5JHI2_9PHAE (FAD-binding FR-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI2_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.930e-27
Identity = 52/83 (62.65%), Postives = 68/83 (81.93%), Query Frame = 1 
Query:    4 VETTLYYDNVLLICTGAGVTPALAVAERFSRKKNIHLMWIARDHGMMALFEKQLRLVNSTVHLTGKPTEEVKRAMSRLFSKSK 252
            +E T+Y++NVLL+CTGAG+TPA++VAERF +KKNIHL+W  RD GM+A+FEKQLR V STV LTGKPT + K+ M  L + S+
Sbjct:  550 MEKTVYFENVLLVCTGAGITPAVSVAERFQKKKNIHLLWCCRDAGMVAMFEKQLRRVKSTVFLTGKPTNKTKKRMVDLLAPSR 632
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BLAST of mRNA_H-elongata_contig67936.14406.1 vs. uniprot
Match: D7G8C8_ECTSI (Putative respiratory burst oxidase protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.930e-15
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1 
Query:    4 VETTLYYDNVLLICTGAGVTPALAVAERFSRKKNIHLMWIARDHGMMALFEKQLRLVNSTVHLTGKPTEEVKRAMSRLFSKSK 252
            VE T+Y+DN         ++ A+ +   F +KKNIHL+W  RD GM+A+FEKQLR V STV+LTGKPT + K+ M  L + S+
Sbjct:  538 VEKTMYFDNE------PSISEAIELEPVFQKKKNIHLLWCCRDAGMVAMFEKQLRRVKSTVYLTGKPTNKTKKRMVDLLAPSR 614
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BLAST of mRNA_H-elongata_contig67936.14406.1 vs. uniprot
Match: A0A6H5JAC5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAC5_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 5.520e-8
Identity = 27/49 (55.10%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:  115 MWIARDHGMMALFEKQLRLVNSTVHLTGKPTEEVKRAMSRLFSKSKYTP 261
            MW++R+ GM+A FEKQLR V STVHLTGKPT++ K+ ++ L + S   P
Sbjct:    1 MWLSREAGMVATFEKQLRRVKSTVHLTGKPTDKTKQRLTDLLAHSSAPP 49
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BLAST of mRNA_H-elongata_contig67936.14406.1 vs. uniprot
Match: A0A7S4FLU6_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FLU6_9EUGL)

HSP 1 Score: 58.9 bits (141), Expect = 1.250e-7
Identity = 24/70 (34.29%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    1 PVETTLYYDNVLLICTGAGVTPALAVAERFSRKKNIHLMWIARDHGMMALFEKQLRLVNST---VHLTGK 201
            P  T L +DN++L+ +G G+TPA+ V    ++ + ++L+W  RD G++  + +QL   NS    ++ TGK
Sbjct:  357 PYHTALEFDNIILVASGIGITPAIEVINHHAKTRKVNLVWSCRDPGLVQFYLEQLAFTNSAWNLIYYTGK 426
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BLAST of mRNA_H-elongata_contig67936.14406.1 vs. uniprot
Match: A0A1E7ER18_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ER18_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.410e-5
Identity = 23/70 (32.86%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:    1 PVETTLYYDNVLLICTGAGVTPALAVAERFSRKKNIHLMWIARDHGMMALFEKQLRLVNSTVHL---TGK 201
            P    + +DN++L+ +G G+TPAL+  E     + I+L+W+ RD  M+  F +  +L    ++L   TGK
Sbjct:  401 PYNNAINFDNMILVASGIGITPALSAIEAHGDSRRINLIWVVRDASMLVFFLENAKLDEKGLNLIFYTGK 470
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BLAST of mRNA_H-elongata_contig67936.14406.1 vs. uniprot
Match: R1FV62_EMIHU (FAD-binding FR-type domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FV62_EMIHU)

HSP 1 Score: 52.0 bits (123), Expect = 3.270e-5
Identity = 23/79 (29.11%), Postives = 45/79 (56.96%), Query Frame = 1 
Query:    1 PVETTLYYDNVLLICTGAGVTPALAVAERFSRKKNIHLMWIARDHGMMALFEKQLRLVN---STVHLTGKPTEEVKRAM 228
            P  T   YDN++L+ +G G+TPAL++   +  K+ ++L+W  RD  ++  +  + +      + ++ TGK   E+ RA+
Sbjct:  334 PYSTAGEYDNLILVASGIGITPALSLITTYKEKRRVNLIWSCRDASLVEFYLDKCQFSTDGWTLIYYTGKRQLELPRAL 412
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig67936.14406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LF83_ECTSI4.160e-3780.49Putative respiratory burst oxidase homolog protein... [more]
D7G8C4_ECTSI9.210e-2856.98Putative respiratory burst oxidase homolog n=1 Tax... [more]
A0A6H5JHI2_9PHAE1.930e-2762.65FAD-binding FR-type domain-containing protein n=1 ... [more]
D7G8C8_ECTSI1.930e-1548.19Putative respiratory burst oxidase protein n=1 Tax... [more]
A0A6H5JAC5_9PHAE5.520e-855.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4FLU6_9EUGL1.250e-734.29Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A1E7ER18_9STRA2.410e-532.86Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
R1FV62_EMIHU3.270e-529.11FAD-binding FR-type domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig67936contigH-elongata_contig67936:489..2149 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue2.6e-24
Seed eggNOG ortholog2880.D7G8C4
EggNOG free text desc.oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
EggNOG OGsKOG0039@1,KOG0039@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size370
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig67936.14406.1prot_H-elongata_contig67936.14406.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig67936 489..2148 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931071.2746408-CDS-H-elongata_contig67936:488..5191622931071.2746408-CDS-H-elongata_contig67936:488..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67936 489..519 +
1691679685.9463172-CDS-H-elongata_contig67936:488..5191691679685.9463172-CDS-H-elongata_contig67936:488..519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67936 489..519 +
1622931071.2912586-CDS-H-elongata_contig67936:906..9611622931071.2912586-CDS-H-elongata_contig67936:906..961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67936 907..961 +
1691679685.955895-CDS-H-elongata_contig67936:906..9611691679685.955895-CDS-H-elongata_contig67936:906..961Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67936 907..961 +
1622931071.3101957-CDS-H-elongata_contig67936:1297..13731622931071.3101957-CDS-H-elongata_contig67936:1297..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67936 1298..1373 +
1691679685.9638815-CDS-H-elongata_contig67936:1297..13731691679685.9638815-CDS-H-elongata_contig67936:1297..1373Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67936 1298..1373 +
1622931071.3236053-CDS-H-elongata_contig67936:1637..17661622931071.3236053-CDS-H-elongata_contig67936:1637..1766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67936 1638..1766 +
1691679685.9717336-CDS-H-elongata_contig67936:1637..17661691679685.9717336-CDS-H-elongata_contig67936:1637..1766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67936 1638..1766 +
1622931071.3370676-CDS-H-elongata_contig67936:2070..21481622931071.3370676-CDS-H-elongata_contig67936:2070..2148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67936 2071..2148 +
1691679685.9797366-CDS-H-elongata_contig67936:2070..21481691679685.9797366-CDS-H-elongata_contig67936:2070..2148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig67936 2071..2148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig67936.14406.1

>prot_H-elongata_contig67936.14406.1 ID=prot_H-elongata_contig67936.14406.1|Name=mRNA_H-elongata_contig67936.14406.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=123bp
PVETTLYYDNVLLICTGAGVTPALAVAERFSRKKNIHLMWIARDHGMMAL
FEKQLRLVNSTVHLTGKPTEEVKRAMSRLFSKSKYTPAPMHAHFEPALAD
GVFDSNHSGGLRSILKSPRESTA
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mRNA from alignment at H-elongata_contig67936:489..2149+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig67936.14406.1 ID=mRNA_H-elongata_contig67936.14406.1|Name=mRNA_H-elongata_contig67936.14406.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1661bp|location=Sequence derived from alignment at H-elongata_contig67936:489..2149+ (Himanthalia elongata Himel1 dioecious)
CCAGTGGAGACGACGCTTTACTACGACAACGGTACGGCAACATGATGTTG
TGGGGAATTGTGGGCAAACGTTTACGGAACTGTTGCAAAAACCAGAGTCG
TTACCTGAATCAAGATACTTGAACTGTCCCAATTATTAGTCGTGGGTTAT
ACAACCCCGCGACTAACTTTGGCTCCCCAACTAAGCGAAAGCCTACGTTA
GTGACCCAAACGATCCATTGACTCGGTGTAGGCTTGGATGCACCAAATAT
TTCCACCTCTTATCGTTGCTATCGTTGTTATTTTTAGCCTTCACCACCAA
ACATTTCCGACGCATGCAATGACTCCTTACTCGACTTCGTTGTATATCCG
CCCGCTTTCGCAACACGTGGCCTCTTGTGCGTCGTGCGTTGGTGTCCAAT
TGGCAACGTTTTTGGTAGTTCTGCTAATCTGCACCGGTGCTGGCGTCACT
CCAGCCTTAGCCGTTGCTGAGAGGTGAGTATCCATCGACTTTTGACGTAG
GTTATGTCGCTCTTTGATTCTTACCTTGGTGATATTAGTATTTACGGTCC
GAATTCCACCAATAACAGCGCACGGCGTATGGAGAGATCACAGTTTCTCC
TAAAATACATGCCTTAAAAACCGGTGCAGTGAAGAGGACGTGAAAACGCC
TAACAAACTGACCAATCGTCAAACCTACCGCACATTTCCATGCGCATCGC
GAGCGTTGTACGACATCGTCTTTCACTTGGGACCGCGGTCATCTTTCATC
GGCCATCTCGGCGAATATGACATCGTCTTTTACTTGGGACTGCGTCACGC
GTTTGACAGATTTTCAAGGAAGAAGAATATCCATCTAATGTGGATTGCCA
GAGACCACGGGATGATGGCGCTCTTTGAGAAGCAGGTGGGTTGAAGCGTC
CACCCCTTTGTGTTAACCGGCTTAAAACGATTTTAGGTGATGCTGTGTTA
TGGTTCTCTATCTTGTTATCCGGATCGCTGGGTGATATGTACAAACGCTC
AAACTGGGTGATATGTACAAACGCTCAAACATTGGAGCTACCTACGTCGC
CCGTGGACCGTATATAATCCGTAAACTGTACACCTCACTGCTTATATATT
CGCTCGTTTCAATGTGCGGTCCTGCTGCCCCATTCCACACTGATAAAAGC
TGAGACTGGTCAATAGCACTGTACACCTCACTGGAAAACCTACCGAGGAG
GTTAAGCGGGCGATGTCGAGACTGTTTTCCAAGTCGAAGTACACACCTGC
TCCAATGCACGCACACTTCGAGCCAGCGGTGAGTGAGTAGCAACAGAGGC
CCTCACGGACGCATGTGCTGACTAGCGTCTGTTTTGCTCTAGGCTCTTAC
GGCCTTTGTATAGAGTGAAATATCGCATATAGTGAGGCCTAGGACGGCGT
CCGCCACTTGATTATGTGCAACATTGCCGTGAAAATTAAGCCTACTCCGA
TATAACCTAACTGTGAAGCCGTCATGCTACTGCGCGATCCGGAGTCTGCG
TGGAATACGCGACGCGTCTCATGGGGTCATTGTTCTTTATGTTAAGTCAT
GATACTCCAATGTACCGGCGCATGCAATCCAGCTGGCGGATGGAGTCTTC
GACTCTAACCATTCCGGTGGTCTGCGATCGATCCTGAAATCTCCACGAGA
GTCCACTGCAA
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Coding sequence (CDS) from alignment at H-elongata_contig67936:489..2149+

>mRNA_H-elongata_contig67936.14406.1 ID=mRNA_H-elongata_contig67936.14406.1|Name=mRNA_H-elongata_contig67936.14406.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=738bp|location=Sequence derived from alignment at H-elongata_contig67936:489..2149+ (Himanthalia elongata Himel1 dioecious)
CCAGTGGAGACGACGCTTTACTACGACAACGCCAGTGGAGACGACGCTTT
ACTACGACAACGTTCTGCTAATCTGCACCGGTGCTGGCGTCACTCCAGCC
TTAGCCGTTGCTGAGAGTTCTGCTAATCTGCACCGGTGCTGGCGTCACTC
CAGCCTTAGCCGTTGCTGAGAGATTTTCAAGGAAGAAGAATATCCATCTA
ATGTGGATTGCCAGAGACCACGGGATGATGGCGCTCTTTGAGAAGCAGAT
TTTCAAGGAAGAAGAATATCCATCTAATGTGGATTGCCAGAGACCACGGG
ATGATGGCGCTCTTTGAGAAGCAGCTGAGACTGGTCAATAGCACTGTACA
CCTCACTGGAAAACCTACCGAGGAGGTTAAGCGGGCGATGTCGAGACTGT
TTTCCAAGTCGAAGTACACACCTGCTCCAATGCACGCACACTTCGAGCCA
GCGCTGAGACTGGTCAATAGCACTGTACACCTCACTGGAAAACCTACCGA
GGAGGTTAAGCGGGCGATGTCGAGACTGTTTTCCAAGTCGAAGTACACAC
CTGCTCCAATGCACGCACACTTCGAGCCAGCGCTGGCGGATGGAGTCTTC
GACTCTAACCATTCCGGTGGTCTGCGATCGATCCTGAAATCTCCACGAGA
GTCCACTGCACTGGCGGATGGAGTCTTCGACTCTAACCATTCCGGTGGTC
TGCGATCGATCCTGAAATCTCCACGAGAGTCCACTGCA
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