mRNA_H-elongata_contig678.14393.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig678.14393.1
Unique NamemRNA_H-elongata_contig678.14393.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig678.14393.1 vs. uniprot
Match: A0A6H5K9Y6_9PHAE (dTMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9Y6_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 1.340e-114
Identity = 172/218 (78.90%), Postives = 188/218 (86.24%), Query Frame = 3 
Query:  228 ARRGAFILFEGVDRCGKTTQANLLVENLNQAGRDACLMRFPDRTTPIGQLINAFLQKTADIDDRCVHLLFSANRWEAESKIRERLKAGTTVVCDRYAYSGVAFSASKPGLELGWCKDPDRGLPAPDTVLFLDICVEDAMKRGQFGKERYEKEEFQRTVRATFLSLMEEDKARTAFLVNGVHWKMLDATRSIKSIQDEIIEVATSAIECVKGKEISPLW 881
            A+RGAFILFEGVDRCGKTTQANLLVE+L QAG DAC MRFPDRTTPIGQ+IN FLQ T  IDDRCVHLLFSANRWEAESKIRE LK GTTVVCDRYAYSGVAFSASKPGL + WCKDPDRGLPAPD +LFLDI VEDAMKRGQFG+ERYEKEEFQRTVRATFL+LMEEDKA      +GV W+++DA R I SIQDEI ++ TS +  V+GK+I  LW
Sbjct:   24 AKRGAFILFEGVDRCGKTTQANLLVESLKQAGHDACFMRFPDRTTPIGQMINGFLQNTTGIDDRCVHLLFSANRWEAESKIRELLKVGTTVVCDRYAYSGVAFSASKPGLSVRWCKDPDRGLPAPDKILFLDISVEDAMKRGQFGEERYEKEEFQRTVRATFLALMEEDKA------SGVAWQLIDANREIGSIQDEIQKIGTSVVGEVEGKDIGSLW 235
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BLAST of mRNA_H-elongata_contig678.14393.1 vs. uniprot
Match: A0A835ZMW1_9STRA (dTMP kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMW1_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.270e-82
Identity = 134/224 (59.82%), Postives = 161/224 (71.88%), Query Frame = 3 
Query:  216 DSRQARRGAFILFEGVDRCGKTTQANLLVENLNQAGRDACLMRFPDRTTPIGQLINAFLQKTADIDDRCVHLLFSANRWEAESKIRERLKAGTTVVCDRYAYSGVAFSASKPGLELGWCKDPDRGLPAPDTVLFLDICVEDAMKRGQFGKERYEKEEFQRTVRATFLSLMEEDKARTAFLVNGVHWKMLDATRSIKSIQDEIIEVATSAIECVK--GKEISPLW 881
            DS   +RGAFILFEGVDRCGKTTQ   LV+ L + G DA  MRFPDRTT IGQ+INA+LQ TA++DD+C+HLLFSANRWEA S I  RL AG T+VCDRYAYSGVAFSA+KPGL + WCK PD+GLPAPD V++LD+ VE AM+RGQFG+ERYEK +FQR VR  F++L E D         G  W ++DA  S   +   +   A  AI  VK  G++I  LW
Sbjct:   12 DSNGPQRGAFILFEGVDRCGKTTQCERLVKRLKEDGHDAVHMRFPDRTTAIGQMINAYLQSTAEMDDQCIHLLFSANRWEALSTIERRLAAGLTIVCDRYAYSGVAFSAAKPGLTVDWCKAPDKGLPAPDVVIYLDLAVEAAMERGQFGEERYEKADFQRRVRDNFMALREAD---------GERWAVVDAAASRDEVAAAVHAAAAKAIADVKEEGRQIQKLW 226
[Close]
BLAST of mRNA_H-elongata_contig678.14393.1 vs. uniprot
Match: A0A7S2H363_9STRA (dTMP kinase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H363_9STRA)

HSP 1 Score: 253 bits (647), Expect = 2.130e-76
Identity = 133/258 (51.55%), Postives = 167/258 (64.73%), Query Frame = 3 
Query:  165 SSVALPEVRMVDHVGGDDSRQARRGAFILFEGVDRCGKTTQANLLVENLNQAGRDA--------------CLMRFPDRTTPIGQLINAFLQKTADIDDRCVHLLFSANRWEAESKIRERLKAGTTVVCDRYAYSGVAFSASKPGLELGWCKDPDRGLPAPDTVLFLDICVEDAMKRGQFGKERYEKEEFQRTVRATFLSLMEEDKARTAFLVNGVHWKMLDATRSIKSIQDEIIEVATSAIECVKGKEISPLWPALPE 896
            S+V+ P++ M   VG D      RGAFIL EGVDRCGKTTQ  +L + L+ A   A               LMRFPDRTT IGQ+IN +L    D+DDR +HLLFSANRWEA +KI + L+AGTT+VCDRYAYSGVAFS +K GL + WC  PDRGLP PD V++LD+ VEDAM+RG FG+ERYEKEEFQR V   F ++M  D            W ++DAT+SI  +Q EI+ +A +     +GK I+ LW   P+
Sbjct:   24 STVSSPDLSMHRSVGNDI---VGRGAFILLEGVDRCGKTTQTKMLADTLSAARHAAPSGAIDDQNMPPRATLMRFPDRTTTIGQMINGYLANGVDMDDRAIHLLFSANRWEARAKIEDTLRAGTTIVCDRYAYSGVAFSGAKEGLSVEWCMAPDRGLPCPDCVIYLDLSVEDAMQRGAFGEERYEKEEFQRRVSDNFKAIMASD---------STPWHVVDATKSIAEMQAEILAIAEATQRQCRGKPITGLWVDNPQ 269
[Close]
BLAST of mRNA_H-elongata_contig678.14393.1 vs. uniprot
Match: A0A1Z5K5E1_FISSO (dTMP kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K5E1_FISSO)

HSP 1 Score: 240 bits (613), Expect = 6.950e-72
Identity = 118/216 (54.63%), Postives = 156/216 (72.22%), Query Frame = 3 
Query:  234 RGAFILFEGVDRCGKTTQANLLVENLNQAGRDACLMRFPDRTTPIGQLINAFLQKTADIDDRCVHLLFSANRWEAESKIRERLKAGTTVVCDRYAYSGVAFSASKPGLELGWCKDPDRGLPAPDTVLFLDICVEDAMKRGQFGKERYEKEEFQRTVRATFLSLMEEDKARTAFLVNGVHWKMLDATRSIKSIQDEIIEVATSAIECVKGKEISPLW 881
            RGAF L EGVDRCGKTTQ   L++ L QAG  A  MRFP+RTT  GQLI+++LQ+T+++DDR +HLLFSANRWE+   I E+LKAGT++VCDRYAYSGVAFSASK  ++L WC+ PDRGLPAPD V+FLD+  E A +RG +G+ERYEK E Q+ VR  F  L + D        +GV WK ++A +++  ++D+I  +A   +E V+  E+  LW
Sbjct:   11 RGAFFLLEGVDRCGKTTQCQRLLQRLLQAGIAATAMRFPNRTTSTGQLIDSYLQQTSNMDDRAIHLLFSANRWESADMIVEQLKAGTSIVCDRYAYSGVAFSASKDNMDLEWCQAPDRGLPAPDCVIFLDMSTEQAEERGGYGQERYEKREMQQRVRQRFQELSQLD--------DGVQWKFVNAAQTMDQVEDDIWSIAQQTLEQVQ-PEVRQLW 217
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BLAST of mRNA_H-elongata_contig678.14393.1 vs. uniprot
Match: A0A2P6TY72_CHLSO (dTMP kinase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TY72_CHLSO)

HSP 1 Score: 231 bits (590), Expect = 5.570e-68
Identity = 129/276 (46.74%), Postives = 172/276 (62.32%), Query Frame = 3 
Query:   66 IAATAILFGRSSFLWPSILISRSFAPTVGPGSRSSVALPEVRMVDHVGGDDSRQARRGAFILFEGVDRCGKTTQANLLVENLNQAGRDACLMRFPDRTTPIGQLINAFLQKTADIDDRCVHLLFSANRWEAESKIRERLKAGTTVVCDRYAYSGVAFSASK--PGLELGWCKDPDRGLPAPDTVLFLDICVEDAMKRGQFGKERYEKEEFQRTVRATFLSLMEEDKARTAFLVNGVHWKMLDATRSIKSIQDEIIEVATSAI-ECVKGKE-ISPLW 881
            +AA A+ + R S   P +L +R       PGSR +++     M        ++   RGAFI+FEG DR GK+TQ  +LVE+L  AG  A L RFPDRTT IG++IN++L   ADIDD  VHLLFSANRWE   ++  +L+AGTT+V DRYAYSGVAF+A+K  PGL+  WC  PD GLPAPD V FL + VE A  RG +G+ERYEK +FQR V   F ++             G  W+++DA++SI+ IQ ++ E A + +  C +G E I  LW
Sbjct:    4 LAAAALKWVRPSAARPHLLAAR-------PGSRRALSSSSAAMAS------TQPQPRGAFIVFEGADRAGKSTQCQMLVEHLQAAGVAAELWRFPDRTTAIGKMINSYLTSQADIDDAAVHLLFSANRWEKREELLRKLRAGTTLVVDRYAYSGVAFTAAKGAPGLDRAWCMSPDEGLPAPDAVFFLSLTVEQAAARGGYGEERYEKADFQRKVLEQFQAM------------RGSSWRVIDASQSIEDIQQQLREQAAAVVARCQRGGEPIKQLW 254
[Close]
BLAST of mRNA_H-elongata_contig678.14393.1 vs. uniprot
Match: A0A0F8ANZ3_LARCR (dTMP kinase n=2 Tax=Sciaenidae TaxID=30870 RepID=A0A0F8ANZ3_LARCR)

HSP 1 Score: 228 bits (582), Expect = 1.300e-67
Identity = 107/217 (49.31%), Postives = 154/217 (70.97%), Query Frame = 3 
Query:  231 RRGAFILFEGVDRCGKTTQANLLVENLNQAGRDACLMRFPDRTTPIGQLINAFLQKTADIDDRCVHLLFSANRWEAESKIRERLKAGTTVVCDRYAYSGVAFSASKPGLELGWCKDPDRGLPAPDTVLFLDICVEDAMKRGQFGKERYEKEEFQRTVRATFLSLMEEDKARTAFLVNGVHWKMLDATRSIKSIQDEIIEVATSAIECVKGKEISPLW 881
            +RGA I+ EGVDR GKTTQ   L E L ++G+ A +MRFPDRTT IG+LI+A+L+  +D++D  VHLLFSANRWE    ++++L+ GTT+V DRYA+SGVAF+++KPG  L WCK PD GLP PD V+FL +   +A  RGQFG+ERYEK +FQR V+  F  LM++           VHW+++DA++S++ +  +I+  + +AI C + + ++ LW
Sbjct:    4 KRGALIVLEGVDRAGKTTQCKKLFEALQRSGKPAEMMRFPDRTTTIGKLISAYLENKSDLEDHTVHLLFSANRWEMVPLMKKKLEQGTTLVVDRYAFSGVAFTSAKPGFCLDWCKSPDVGLPQPDLVMFLQLSPSEAALRGQFGEERYEKSDFQRAVQNKFQQLMKD---------RSVHWQVIDASQSVEDVHKDIMTHSLNAINCAQNQALAELW 211
[Close]
BLAST of mRNA_H-elongata_contig678.14393.1 vs. uniprot
Match: A0A7S2L3C4_9STRA (dTMP kinase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L3C4_9STRA)

HSP 1 Score: 229 bits (585), Expect = 2.270e-67
Identity = 116/229 (50.66%), Postives = 156/229 (68.12%), Query Frame = 3 
Query:  219 SRQARRGAFILFEGVDRCGKTTQANLLVENLNQAGRDACLMRFPDRTTPIGQLINAFLQKTADIDDRCVHLLFSANRWEAESKIRERLKAGTTVVCDRYAYSGVAFSASKP-------GLELGWCKDPDRGLPAPDTVLFLDICVEDAMKRGQFGKERYEKEEFQRTVRATFLSLMEEDKARTAFLVNGVHWKMLDATRSIKSIQDEIIEVATSAIECVK-GKEISPLW 881
            S  A+RGAFIL EGVDRCGKTTQ  LL+++L   G  A  MRFPDRTT +GQLIN +L +T +++DR VHLLFSANRWEA + + + L  GTT+VCDRYAYSGVAFS++K         L + WCK  D GLPAPD V+FLD+  E+A KRG +G ERYEK+E Q  VR  F  L ++D+A        V WK++DA++S++ +Q +I ++    ++ V  G ++  +W
Sbjct:   11 SAPAKRGAFILLEGVDRCGKTTQCGLLLQHLLALGITALAMRFPDRTTMVGQLINGYLSQTREMEDRAVHLLFSANRWEASNSLAQHLANGTTIVCDRYAYSGVAFSSAKSYPDARHKELSIDWCKACDIGLPAPDVVIFLDLTQEEAQKRGGYGGERYEKKEMQMRVRQRFDELQKDDEAS-----GRVPWKVVDASQSVEDVQRDINQIVEETLQRVNAGADLKKMW 234
[Close]
BLAST of mRNA_H-elongata_contig678.14393.1 vs. uniprot
Match: A0A6P7M9N3_BETSP (dTMP kinase n=5 Tax=Percomorphaceae TaxID=1489872 RepID=A0A6P7M9N3_BETSP)

HSP 1 Score: 227 bits (578), Expect = 5.360e-67
Identity = 111/219 (50.68%), Postives = 152/219 (69.41%), Query Frame = 3 
Query:  231 RRGAFILFEGVDRCGKTTQANLLVENLNQAGRDACLMRFPDRTTPIGQLINAFLQKTADIDDRCVHLLFSANRWEAESKIRERLKAGTTVVCDRYAYSGVAFSASKPGLELGWCKDPDRGLPAPDTVLFLDICVEDAMKRGQFGKERYEKEEFQRTVRATFLSLMEEDKARTAFLVNGVHWKMLDATRSIKSIQDEIIEVATSAIECVKGKEISPLWPA 887
            +RGA I+ EGVDR GKTTQ N LV++L Q+GR   +MRFPDRTT IGQLINA+L+K +D++D  VHLLFSANRWE    I+++L+ GTT+V DRYA+SGVAF+++KPG  L WCK PD GLP PD V+FL +   +A  RGQFG+ERYE   FQR V+  F  LM++           V+W+++DA++S++ +  +I   + +AI   +   +  LW A
Sbjct:    4 KRGALIVLEGVDRAGKTTQCNKLVQSLQQSGRAVEMMRFPDRTTIIGQLINAYLEKKSDLEDHTVHLLFSANRWELVPLIKKKLEQGTTLVVDRYAFSGVAFTSAKPGFSLDWCKKPDVGLPKPDLVMFLQLSPAEAALRGQFGEERYETSAFQRAVQQKFEHLMKD---------LSVNWQVIDASQSVEDVHKQIAYHSLNAINTAQNLPLGELWKA 213
[Close]
BLAST of mRNA_H-elongata_contig678.14393.1 vs. uniprot
Match: A0A7S3H922_9STRA (dTMP kinase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H922_9STRA)

HSP 1 Score: 228 bits (580), Expect = 6.740e-67
Identity = 112/218 (51.38%), Postives = 154/218 (70.64%), Query Frame = 3 
Query:  228 ARRGAFILFEGVDRCGKTTQANLLVENLNQAGRDACLMRFPDRTTPIGQLINAFLQKTADIDDRCVHLLFSANRWEAESKIRERLKAGTTVVCDRYAYSGVAFSASKPGLELGWCKDPDRGLPAPDTVLFLDICVEDAMKRGQFGKERYEKEEFQRTVRATFLSLMEEDKARTAFLVNGVHWKMLDATRSIKSIQDEIIEVATSAIECVKGKEISPLW 881
            A RGAFILFEGVDRCGKTTQ  +L + L ++ R+   +RFP+R + IGQLI+++LQ T++++D+ +HLLFSANRWE    I  +L  G T++CDRYAYSGVAF+++K GL+L WCK  DRGLPAPD +++LDI VEDA KRG FG+ERYEK +FQ+ VR  F+ L  ED+A  A     V W +++A +SI  +  EI  +  + +  +  K +  LW
Sbjct:   32 ASRGAFILFEGVDRCGKTTQVGMLKDYLTKS-RETEQIRFPERKSTIGQLIDSYLQSTSNMNDQSIHLLFSANRWEQSDSIESKLANGNTLICDRYAYSGVAFTSAK-GLDLDWCKSCDRGLPAPDCIIYLDIPVEDAAKRGNFGEERYEKIDFQKKVREQFMLLQSEDQASAA-----VPWHVVNAAQSIDEVHSEIKNIVDNVLASLDDKPVGKLW 242
[Close]
BLAST of mRNA_H-elongata_contig678.14393.1 vs. uniprot
Match: W5MHK0_LEPOC (dTMP kinase n=2 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5MHK0_LEPOC)

HSP 1 Score: 226 bits (577), Expect = 1.150e-66
Identity = 110/217 (50.69%), Postives = 152/217 (70.05%), Query Frame = 3 
Query:  231 RRGAFILFEGVDRCGKTTQANLLVENLNQAGRDACLMRFPDRTTPIGQLINAFLQKTADIDDRCVHLLFSANRWEAESKIRERLKAGTTVVCDRYAYSGVAFSASKPGLELGWCKDPDRGLPAPDTVLFLDICVEDAMKRGQFGKERYEKEEFQRTVRATFLSLMEEDKARTAFLVNGVHWKMLDATRSIKSIQDEIIEVATSAIECVKGKEISPLW 881
            RRGAFI+ EGVDR GKTTQ   LV+ L ++G  A +MRFPDRTT IGQLI+A+L+K +D++D  VHLLFSANRWE    +R++L+ G ++V DRYA+SGVAF+++KPG  L WCK PD GLP PD VLFL +  E+A +RG++G ERYE  +FQR V+  F  LM++           ++WK++DA +SI+ +  EI   + +AI+    + I+ LW
Sbjct:    4 RRGAFIVLEGVDRAGKTTQCKKLVQALQESGHRAEIMRFPDRTTKIGQLISAYLEKKSDLEDHTVHLLFSANRWELVPAMRQKLEQGVSLVVDRYAFSGVAFTSAKPGFCLDWCKKPDVGLPKPDLVLFLQLSPEEAARRGEYGAERYESSDFQRNVQQRFQQLMKDP---------SLNWKVIDAAQSIEDLHTEIKTHSEAAIKAATNQPITELW 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig678.14393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9Y6_9PHAE1.340e-11478.90dTMP kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
A0A835ZMW1_9STRA1.270e-8259.82dTMP kinase n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A7S2H363_9STRA2.130e-7651.55dTMP kinase n=1 Tax=Dictyocha speculum TaxID=35687... [more]
A0A1Z5K5E1_FISSO6.950e-7254.63dTMP kinase n=2 Tax=Fistulifera solaris TaxID=1519... [more]
A0A2P6TY72_CHLSO5.570e-6846.74dTMP kinase n=1 Tax=Chlorella sorokiniana TaxID=30... [more]
A0A0F8ANZ3_LARCR1.300e-6749.31dTMP kinase n=2 Tax=Sciaenidae TaxID=30870 RepID=A... [more]
A0A7S2L3C4_9STRA2.270e-6750.66dTMP kinase n=1 Tax=Leptocylindrus danicus TaxID=1... [more]
A0A6P7M9N3_BETSP5.360e-6750.68dTMP kinase n=5 Tax=Percomorphaceae TaxID=1489872 ... [more]
A0A7S3H922_9STRA6.740e-6751.38dTMP kinase (Fragment) n=1 Tax=Spumella elongata T... [more]
W5MHK0_LEPOC1.150e-6650.69dTMP kinase n=2 Tax=Lepisosteus oculatus TaxID=791... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig678contigH-elongata_contig678:13521..19442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.4
Seed ortholog evalue4.3e-95
Seed eggNOG ortholog2880.D7FSC0
KEGG rclassRC00002
KEGG koko:K00943
KEGG ReactionR02094,R02098
KEGG Pathwayko00240,ko01100,map00240,map01100
KEGG ModuleM00053
GOsGO:0003674,GO:0003824,GO:0004798,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006220,GO:0006221,GO:0006227,GO:0006233,GO:0006235,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009041,GO:0009058,GO:0009117,GO:0009123,GO:0009132,GO:0009133,GO:0009138,GO:0009139,GO:0009141,GO:0009142,GO:0009147,GO:0009148,GO:0009165,GO:0009186,GO:0009189,GO:0009196,GO:0009197,GO:0009200,GO:0009202,GO:0009211,GO:0009212,GO:0009219,GO:0009221,GO:0009262,GO:0009263,GO:0009265,GO:0009394,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016776,GO:0018130,GO:0019205,GO:0019438,GO:0019637,GO:0019692,GO:0034641,GO:0034654,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044464,GO:0046072,GO:0046075,GO:0046077,GO:0046385,GO:0046483,GO:0046940,GO:0050145,GO:0055086,GO:0071704,GO:0072527,GO:0072528,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.dTDP metabolic process
EggNOG OGsCOG0125@1,KOG3327@2759
EC2.7.4.9
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-20_004950.1
Exons6
Model size1870
Cds size729
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig678.14393.1prot_H-elongata_contig678.14393.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig678 13712..18492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.8579834-UTR-H-elongata_contig678:13520..137111622931069.8579834-UTR-H-elongata_contig678:13520..13711Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig678 13521..13711 +
1691679685.3905227-UTR-H-elongata_contig678:13520..137111691679685.3905227-UTR-H-elongata_contig678:13520..13711Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig678 13521..13711 +
1622931069.9822-UTR-H-elongata_contig678:18492..194421622931069.9822-UTR-H-elongata_contig678:18492..19442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig678 18493..19442 +
1691679685.4827642-UTR-H-elongata_contig678:18492..194421691679685.4827642-UTR-H-elongata_contig678:18492..19442Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig678 18493..19442 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931069.8701518-CDS-H-elongata_contig678:13711..138711622931069.8701518-CDS-H-elongata_contig678:13711..13871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig678 13712..13871 +
1691679685.4078233-CDS-H-elongata_contig678:13711..138711691679685.4078233-CDS-H-elongata_contig678:13711..13871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig678 13712..13871 +
1622931069.881593-CDS-H-elongata_contig678:15737..158461622931069.881593-CDS-H-elongata_contig678:15737..15846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig678 15738..15846 +
1691679685.426386-CDS-H-elongata_contig678:15737..158461691679685.426386-CDS-H-elongata_contig678:15737..15846Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig678 15738..15846 +
1622931069.8946016-CDS-H-elongata_contig678:16793..168851622931069.8946016-CDS-H-elongata_contig678:16793..16885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig678 16794..16885 +
1691679685.4414916-CDS-H-elongata_contig678:16793..168851691679685.4414916-CDS-H-elongata_contig678:16793..16885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig678 16794..16885 +
1622931069.9173958-CDS-H-elongata_contig678:17099..171941622931069.9173958-CDS-H-elongata_contig678:17099..17194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig678 17100..17194 +
1691679685.4525847-CDS-H-elongata_contig678:17099..171941691679685.4525847-CDS-H-elongata_contig678:17099..17194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig678 17100..17194 +
1622931069.9391465-CDS-H-elongata_contig678:17476..175841622931069.9391465-CDS-H-elongata_contig678:17476..17584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig678 17477..17584 +
1691679685.4624667-CDS-H-elongata_contig678:17476..175841691679685.4624667-CDS-H-elongata_contig678:17476..17584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig678 17477..17584 +
1622931069.9645991-CDS-H-elongata_contig678:18327..184921622931069.9645991-CDS-H-elongata_contig678:18327..18492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig678 18328..18492 +
1691679685.4725206-CDS-H-elongata_contig678:18327..184921691679685.4725206-CDS-H-elongata_contig678:18327..18492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig678 18328..18492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig678.14393.1

>prot_H-elongata_contig678.14393.1 ID=prot_H-elongata_contig678.14393.1|Name=mRNA_H-elongata_contig678.14393.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=243bp
MVDHVGGDDSRQARRGAFILFEGVDRCGKTTQANLLVENLNQAGRDACLM
RFPDRTTPIGQLINAFLQKTADIDDRCVHLLFSANRWEAESKIRERLKAG
TTVVCDRYAYSGVAFSASKPGLELGWCKDPDRGLPAPDTVLFLDICVEDA
MKRGQFGKERYEKEEFQRTVRATFLSLMEEDKARTAFLVNGVHWKMLDAT
RSIKSIQDEIIEVATSAIECVKGKEISPLWPALPEKGLVESD*
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mRNA from alignment at H-elongata_contig678:13521..19442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig678.14393.1 ID=mRNA_H-elongata_contig678.14393.1|Name=mRNA_H-elongata_contig678.14393.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5922bp|location=Sequence derived from alignment at H-elongata_contig678:13521..19442+ (Himanthalia elongata Himel1 dioecious)
GGTTGTATGCGATCCTGCTGGAACGCTCAGGGACAACAAGAAGCAAAACG
AATCTTCGAACCACGATCGCGGCTACGGCCATCTTGTTCGGTCGTTCATC
CTTCCTGTGGCCATCCATACTAATTTCACGATCATTCGCTCCTACAGTCG
GCCCAGGTTCTCGATCATCCGTTGCCTTGCCGGAAGTACGGATGGTGGAC
CATGTCGGAGGGGATGATAGCAGACAAGCGCGGAGAGGAGCATTTATACT
TTTCGAGGGAGTGGACCGGTGTGGAAAGACGACGCAGGCGAATCTCTTGG
TGGAGAACCTCAATCAAGCTGGTCGCGACGCTTGCTTGATGCGATTTCCG
GGTGAAAGCTCAGTAGGATTGTTGTTTATATTTCAGATTCAGAATACGCA
TTATAATAGCTCGTTTAGAGTGTACCAGTTAGGTATAATCATCACATATA
GTAGAGGAAGATCAACCGGATTTGGTTGCCTCCTGCTCGTGGTCAGTTAA
AAGGAAAATAATTATCCCCGGTCCCCGTTCGCTCCTGATAATTTGGTCTC
GCGAAACGGGTTCAGCAGTCCCGTCCCGCGTCAGCCTGCTCATTCTCTCA
GCCCAGGCTGAATCTGGTGCTTACTCCTGGGATCCTCTCGATCCTCCCGT
TTTCCGCGACGGCGTCCATCTCTACCGCCAACCGCCATCGGGTCAGTCCT
GATTTCATCAGGTCACGCAATTGCGTACCGATGGCGTTTACTATCGAGAG
TCCGTCGGCACTGAGCCAATAATCATCAAGGTAGCTTGAGTAACGGGTGC
AGCCTGTTGAGGTAACCCCATGGACCAATTATTGCACGCCTCTCTTTTCC
CGCAGCCACTATGGGTATAGTGGGCATGTGCGATACACAGTATAGCAGGC
GTGGATGTATAGTAGAGTAAGGTTCACCTGAACAGACGAGAGTTGCAGCG
GTAGTCCGGCGTGGTTGCGTAAGCAACGCGAGTAGGATAGGCCAATTAAA
CGTCTTCAGAGATAGCTCCCCATAAGGAGTGGGGTATTTGCAAACTGGTG
CGGCGCCCCTTTTTTTGTAATGCCAGTTTTCTTAAGACGTTGTAGTGGCC
GCCTATCCCCGTTCGCGCCTGGGAATTTAGTCTCGTGAGCCGCTCATAAT
CTTCACCCAGGCTGAACCTGGTATACATACGTCGATTTTCCAACCACCCC
ATCACAGTTGTTTACCTAGGCACATACTGTTGTAGCGGTGAACTTTCTCT
TTATTAACTACCACCCAGTTTTGTTTTTGTAGGGTAGAACGTAGCAGGGC
ATTAAATAGGGCCTCTCAGCTAGCGACCCCGCCAATATATTGGCGAAATA
TCAAATACCGCCAATTTGGGAAAGGGCCATTGGCGGCTTGCCTTGCCGCC
AACAGGTTTTGAGGTGCAGCTAGTAGCCGTCCATTTTTTGGGAAGGGGGT
TGTTTCTCCTGCCGAAGCCCAGGGGGGGAAATGGGAGTGCTTTTTTCGCG
CTTTGCACTGCAATTGTGATCGATCGATTGTGTTGCATGTTGCATGTTTC
ATGCTCAGTAGAGCAGCTTACGTAGCTATAGTAGTTGTGACACTGTCGAG
CTGGTGTGCAATTGAACAAAAAAAACGACCCATTTCACCACTATGTCGGG
CCTAAAAATCTAAAATGTTTTCCTCCGGCAGCCCTCCAGGGGGGTGCCAA
TGCGCCTGTGGCACTATTTAATGACCTGGTAGGTAGTTTCACCCTCTTTT
AGACTAGACGGAATTATCTCGTTTAGTTTATTTTCTTCAACTAAAGCTAA
TACTATCAACAGCATGTGAGTTCATTAATGATGTCCTTATGTCCGAAATA
ATAAATAATGGTCCCCTGGACTGCACCTCTCATGGTGCTAAGAAGGCGTG
GATGTTCGAAGGGTTCTAATGAGTTCAAGGTTTTTTAATATAAATAACAA
TGTCCGTGTACGGCAACCAGGCCAAACGAGACGAGAGCACCAACTTACTT
CTAAGTTGTTCCGGTTTGAAGCGCTGGCTTCAAAGGCTTCAAAGGTTCAG
GTCACTTTCATCCTACCAGTATACATACGTGATCATCACATGTAGCAGAG
TATGATAAACCGGATTTGGTAGCCCTGTCACCCTATCCAATGTTCCTTCG
TGAGGTCATATTGAAGCAGTTCAGAACGTGTAAACGAGTTGCTTGTTCAC
CATGTTTTTTTCAACAGATCGTACGACCCCAATCGGACAACTGATCAACG
CCTTCCTTCAGAAGACCGCGGATATCGATGATCGCTGTGTACACTTGCTC
TTTTCTGCCAACCGCTGGGAGGCAGAGTGAGTCTACCCGAGTTCATCCAT
CTGTTGGACTAGCTTCTTTTTAGGGTTTCGTTTTTGTAGGGATGCTTCAC
CTCGTCCTGCTCGAGTCATGACGTCATCGTAAGGATGGCCTTCCAAGTAT
CCGATTGCCGTCATCACTAGAGATCTAGCAACAAATGTGAACATCTTCTT
CGGCTATTAATAGCTCCGTCGGTCATTGTGCATTTTGGTGGCGTGGTGTG
GCTTTACCGAGGATCGACATTAGAGAAGACGATTTTTTGCTTAAATGTAG
TAATGTCCACATTCGGACCTGACGTTCCGGATGGTGTATTTTTTCTACCT
TGTGACCACGGGCTGGATTTTGACATCAGCTTATGTGAGAATTCAATCAA
TCAAAATCAATCAATAGTTGGTCCCCTAGACTGTACCTCTCATGGTGTGC
TAAGAAGGCGTAGATGTTCGAAGGGTCTTATTGAGTTCATATGTTTTTTT
AATAAAAAGTACACAAACATCAAGTGGTCAGCAACAACAACAACAACAAA
CTGAACGGAAATTCAAATCCCAACCCATATCGAAGGTCACAACCTTGGTA
ATCAGTGATCTCAGTCGTACCATGCGGATGGGAATACTTTTTCTCCCCAC
GCAAGCATTTCGTCTGATGTGTTTTGTTGTATTAAAGCTATTTTTGCCAA
GAAAAATTGACACAGGAGATGTGTGTTACCTGGGAATCGAACGCGCGACG
GTTTGGAAGCGCTGACATAGGCAGCCGTAGAGGAGACAGTGCTATTGTAC
GCCGAACAACTGGCGCTCCTCATATTGTAACATGTCCTCCCTTCGTCCTT
CAAGCCGGTTATCCGGAAGAAGTAGCTCAGGGACGGATTACCTTGCCCTG
GCGGTTCGATTCGCGCACGCCTGCTCCAATGGCGTTCGACCCCGACTTGA
CTCGACGCGTGTGCTTCTTCTAGGTCTAAAATACGTGAGCGCCTCAAGGC
AGGAACAACCGTGGTTTGCGATCGCTACGCCTACAGTGGAGTCGCTTTTT
CTGCCTCGAAGCCGGGTGAGTACCCCCGAAATATCGAAATATCACACGCA
GCATCAATATATTCATACCCCGAATTGGAGGTAAAAAGTACTTCTGCGTT
GGAGCATTGCACGCCCTGCATCGGCCCACGTCGTATGAATATCCCCAGAA
TGGTCGTGATGGCACTCTCACTCTATTTCCTAAGCTGCAATCGGGCAATC
GCGGGGCTCGTTCCCAATGTCTTAACCAGGTCTTGAATTAGGATGGTGCA
AAGACCCCGATCGAGGGCTGCCAGCGCCAGACACGGTCCTATTCTTGGAT
ATTTGTGTGGAAGATGCAATGAAGGTTTGTCGTTCCGTCGCGGCAGTAGC
AATCCTCATTGGCGCGCCCTAGCAAACGCTCTGATTGTTGCTCTAAAGTC
GGGCAATGACCATCTGGCTGATGGCGGGCGTGCCGATTTTCCGGTATCTA
GTGTGGATCTTACAGTATATCTCACCACAGGCCGTCTGAACGTAGATGTA
CATTTCGGACACCGACGCTAGCCCCATTGTATACCTTAAGACGTCATATA
GGCACATCCCTCTCTCTGCCCCTGTATGTTGATCTCTGATTTTGTGGATA
TCCCAGCGAGGACAATTTGGGAAAGAGCGCTACGAGAAAGAGGAGTTCCA
GCGAACAGTTCGGGCAACATTCCTGTCTCTCATGGAAGAAGACAAGGCAC
GCACGGCTTTTCTTGTTCCTCTTATCTAATCACCGAGCCTTGGTCAGAAA
TGTGTTTCGGTTCTTATGTTTAAGGGTTAGGGTTAGGTCCAGTTCGGAAA
ATGACACCCAGCGATATCCAAACCACTTTCGCCGGTCGTGGTACTGATTC
TGATGTCGATCTGATATCTGACGTACGTATTGAGATGTCGGCATGTTACT
ATTTGTCTGTTAATTGCTGGTTGCCGTCGTTCCTATTGCAGCTGCTCACT
TTAAAATATAGTATATTATTGTAAAGGGAGATTAATATGAATAGTTAACC
AAAGATCTATAAATAGGGCTATGAGTTCCCCGCTCCTGCTTGTGGTTGTG
GTGACGATATACGTTATAGGGTAGGCGAAGGTATGAGGGTCACGTTATGG
TCATCTGGACACGACATCATCAACACGAGGAATCCCAAATCGACCAAAAT
CATTAACTGGAGTAACCACATCTTCAGCCTCAATACCTACCCCCATCACA
ACGATATCCATATACTGGTCAGGATATAGATATATACATACATACACTTC
TATATATATAATATATACTCGGGAATTAATTTAAGCATTTATCGTTGGAG
CTATTTTTATTTAAAAGACGGTTTGATTTTTTAAATGCTAGGGTATGCAC
ATAATACTTCATCACTGAATCGAACATGGTCATATAGACCTGATCTCCAT
CTCCCAGTTAAAGTTTAGACGGAAACCTGGGGGGATTGAATTTGCTCATT
TCTGCAGGTGAACGGGGTGCACTGGAAAATGCTTGACGCCACGAGGTCGA
TCAAAAGCATCCAAGACGAGATCATCGAAGTCGCCACTTCCGCGATCGAA
TGTGTCAAGGGAAAAGAAATATCCCCGCTGTGGCCTGCTCTTCCCGAGAA
GGGACTTGTAGAGAGCGACTGATGATTCAACGCGGTGATTAAGTCGATCT
ATTACCACCACAGTTGAGGATGAGTGGCGGGCGGGTGCATGTTCTGATCG
TGCTAAAATGTTTAAGGTGACAATAAGCTGTTGCTGCTTAGTAGAGCCTC
TCGCCATCGCCAGCGAGGCTTCTAAAGCACATGATACTGTACATGTTACA
ATACTCGATTTAATTACATGCCGACACCCCACGACAATTAGATGCCAGAA
CGGCCATCAATCCGCCAAGATGGCCGATGTTTTGAGTTTTAACAAAAAAG
CGTAAGCTTCAAGAGTATTACCAGCCGCCTCTCTATATTCTCTATAGGGG
TTACTTTAACACGCCCCCTGGTTCGGGCTTCACTGACATTGCCCCTATTC
GAGGGTTAGGGTTAGGGTTAGGGTGGACCTCCTCTCCTCTCCTCTTCTCT
TATTAATAGTTCTGACTTGACTGTCGATACTACTGCGAAAGCAACCTTGG
TAAAGGGGACGGCATCACAAATGACTGCCGTGATCGTACGCTGGCTCGAA
TAACCACTCAACGAGGGTGCCGAGAGGTTCGAACGGAAACGCGAGGATTG
AGCAGGGGAGCCGAAGGAGGGGCGGCGGAGTGTCCAAAAGCGGAACAGGA
TCTGGATGGCGGGGGGGTTGGGGGGCAGGCTCTTGTGTTCTTTTCCATAA
GGGAAGTAGGCAGGTAGAGCACGGGAAATGGCAACTTTGGAGAAGCCAGG
GGCTGAGAAATATGGTTCGGAACTGCCCATATCACGGCGCCAGGACCCCG
CCGTCGGTGTTCCGAGCCCGAGGAGGTTGAGAGGTTCTGTAGCACTTGGT
ATCAAACTTGAAACAACCCTGTGTGCGACCGATCAGAGCACAATCTGGGG
AGCTACGGGACGCACTGGCGCTGACGCCTCCTTGCAGGGCAATGCTATTA
ATACAATGCTAATTCTAATGCT
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Coding sequence (CDS) from alignment at H-elongata_contig678:13521..19442+

>mRNA_H-elongata_contig678.14393.1 ID=mRNA_H-elongata_contig678.14393.1|Name=mRNA_H-elongata_contig678.14393.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1458bp|location=Sequence derived from alignment at H-elongata_contig678:13521..19442+ (Himanthalia elongata Himel1 dioecious)
ATGGTGGACCATGTCGGAGGGGATGATAGCAGACAAGCGCGGAGAGGAGC
ATTTATACTTTTCGAGGGAGTGGACCGGTGTGGAAAGACGACGCAGGCGA
ATCTCTTGGTGGAGAACCTCAATCAAGCTGGTCGCGACGCTTGCTTGATG
CGATTTCCGGATGGTGGACCATGTCGGAGGGGATGATAGCAGACAAGCGC
GGAGAGGAGCATTTATACTTTTCGAGGGAGTGGACCGGTGTGGAAAGACG
ACGCAGGCGAATCTCTTGGTGGAGAACCTCAATCAAGCTGGTCGCGACGC
TTGCTTGATGCGATTTCCGGATCGTACGACCCCAATCGGACAACTGATCA
ACGCCTTCCTTCAGAAGACCGCGGATATCGATGATCGCTGTGTACACTTG
CTCTTTTCTGCCAACCGCTGGGAGGCAGAATCGTACGACCCCAATCGGAC
AACTGATCAACGCCTTCCTTCAGAAGACCGCGGATATCGATGATCGCTGT
GTACACTTGCTCTTTTCTGCCAACCGCTGGGAGGCAGAGTCTAAAATACG
TGAGCGCCTCAAGGCAGGAACAACCGTGGTTTGCGATCGCTACGCCTACA
GTGGAGTCGCTTTTTCTGCCTCGAAGCCGGGTCTAAAATACGTGAGCGCC
TCAAGGCAGGAACAACCGTGGTTTGCGATCGCTACGCCTACAGTGGAGTC
GCTTTTTCTGCCTCGAAGCCGGGTCTTGAATTAGGATGGTGCAAAGACCC
CGATCGAGGGCTGCCAGCGCCAGACACGGTCCTATTCTTGGATATTTGTG
TGGAAGATGCAATGAAGGTCTTGAATTAGGATGGTGCAAAGACCCCGATC
GAGGGCTGCCAGCGCCAGACACGGTCCTATTCTTGGATATTTGTGTGGAA
GATGCAATGAAGCGAGGACAATTTGGGAAAGAGCGCTACGAGAAAGAGGA
GTTCCAGCGAACAGTTCGGGCAACATTCCTGTCTCTCATGGAAGAAGACA
AGGCACGCACGGCTTTTCTTCGAGGACAATTTGGGAAAGAGCGCTACGAG
AAAGAGGAGTTCCAGCGAACAGTTCGGGCAACATTCCTGTCTCTCATGGA
AGAAGACAAGGCACGCACGGCTTTTCTTGTGAACGGGGTGCACTGGAAAA
TGCTTGACGCCACGAGGTCGATCAAAAGCATCCAAGACGAGATCATCGAA
GTCGCCACTTCCGCGATCGAATGTGTCAAGGGAAAAGAAATATCCCCGCT
GTGGCCTGCTCTTCCCGAGAAGGGACTTGTAGAGAGCGACTGAGTGAACG
GGGTGCACTGGAAAATGCTTGACGCCACGAGGTCGATCAAAAGCATCCAA
GACGAGATCATCGAAGTCGCCACTTCCGCGATCGAATGTGTCAAGGGAAA
AGAAATATCCCCGCTGTGGCCTGCTCTTCCCGAGAAGGGACTTGTAGAGA
GCGACTGA
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