mRNA_H-elongata_contig118630.1439.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118630.1439.1
Unique NamemRNA_H-elongata_contig118630.1439.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118630.1439.1 vs. uniprot
Match: A0A6H5K691_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K691_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 3.280e-30
Identity = 59/71 (83.10%), Postives = 62/71 (87.32%), Query Frame = 1 
Query:    7 ERRLHGPGMWGAYPDAVIPGLGVVEGGQTSTGSVIAWFRRLVSNGEEHNLLPYATLNEEAEAVPIGCEGLV 219
            +R LHG GMWGAYPDAV+PGLGV EGGQTSTGSVIAWFRRLVS G E  L+ Y TLNEEAEAVPIGCEGLV
Sbjct:  277 DRHLHGSGMWGAYPDAVLPGLGVAEGGQTSTGSVIAWFRRLVSGGGEE-LVSYKTLNEEAEAVPIGCEGLV 346
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BLAST of mRNA_H-elongata_contig118630.1439.1 vs. uniprot
Match: A0A2P6TT72_CHLSO (Glycerol kinase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TT72_CHLSO)

HSP 1 Score: 93.2 bits (230), Expect = 1.770e-20
Identity = 42/73 (57.53%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 LSERRLHGPGMWGAYPDAVIPGLGVVEGGQTSTGSVIAWFRRLVSNGEEHNLLPYATLNEEAEAVPIGCEGLV 219
            ++++  HG G+WG YPDA++PG+ +VEGGQTSTGS +AW+RRLV   +      YA LNEEA AVP GCEG+V
Sbjct:  276 VTDKVFHGKGIWGVYPDAILPGVHMVEGGQTSTGSAVAWYRRLVGEPD------YAALNEEAAAVPPGCEGVV 342
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BLAST of mRNA_H-elongata_contig118630.1439.1 vs. uniprot
Match: E1ZGK8_CHLVA (Glycerol kinase n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGK8_CHLVA)

HSP 1 Score: 91.3 bits (225), Expect = 8.420e-20
Identity = 45/73 (61.64%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 LSERRLHGPGMWGAYPDAVIPGLGVVEGGQTSTGSVIAWFRRLVSNGEEHNLLPYATLNEEAEAVPIGCEGLV 219
            ++++  HG GMWG YPDA++PG+ VVEGGQTSTGS +AW+RRLV  GEE     Y  LN EAEAV  GCEG+V
Sbjct:  287 VTDQVFHGKGMWGVYPDALLPGVHVVEGGQTSTGSAVAWYRRLV--GEEG----YEALNREAEAVAPGCEGVV 353
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BLAST of mRNA_H-elongata_contig118630.1439.1 vs. uniprot
Match: A0A848ZI02_9PROT (Carbohydrate kinase n=1 Tax=Inquilinus sp. TaxID=1932117 RepID=A0A848ZI02_9PROT)

HSP 1 Score: 89.4 bits (220), Expect = 3.650e-19
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    1 LSERRLHGPGMWGAYPDAVIPGLGVVEGGQTSTGSVIAWFRRLVSNGEEHNLLPYATLNEEAEAVPIGCEGLV 219
            LS+   HG G+WG Y DAVIPGL VVEGGQTSTGSV+AWF++L+  G     + Y  LN +A A+P G EGLV
Sbjct:  275 LSDSEFHGEGIWGTYADAVIPGLHVVEGGQTSTGSVVAWFKKLLGEG-----VTYEALNRDAAALPPGAEGLV 342
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BLAST of mRNA_H-elongata_contig118630.1439.1 vs. uniprot
Match: UPI0004AD97D4 (FGGY-family carbohydrate kinase n=1 Tax=Deinococcus pimensis TaxID=309888 RepID=UPI0004AD97D4)

HSP 1 Score: 89.0 bits (219), Expect = 5.060e-19
Identity = 44/73 (60.27%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    1 LSERRLHGPGMWGAYPDAVIPGLGVVEGGQTSTGSVIAWFRRLVSNGEEHNLLPYATLNEEAEAVPIGCEGLV 219
            LS+R L   GMWG+YPDAV+PGL VVEGGQTSTGSV+AW RRL+  G       Y  L E A A+P G +GLV
Sbjct:  271 LSDRELSARGMWGSYPDAVVPGLHVVEGGQTSTGSVVAWLRRLLGEGAS-----YEELGERASALPPGADGLV 338
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BLAST of mRNA_H-elongata_contig118630.1439.1 vs. uniprot
Match: D7FTM7_ECTSI (Xylulose kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM7_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.270e-18
Identity = 39/43 (90.70%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    7 ERRLHGPGMWGAYPDAVIPGLGVVEGGQTSTGSVIAWFRRLVS 135
            +R LHGPGMWGAYPDAV+PGLGVVEGGQTSTGS IAWFRRLVS
Sbjct:  277 DRHLHGPGMWGAYPDAVLPGLGVVEGGQTSTGSGIAWFRRLVS 319
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BLAST of mRNA_H-elongata_contig118630.1439.1 vs. uniprot
Match: A0A512DVM5_9PROT (Carbohydrate kinase n=1 Tax=Skermanella aerolata TaxID=393310 RepID=A0A512DVM5_9PROT)

HSP 1 Score: 87.4 bits (215), Expect = 1.740e-18
Identity = 40/73 (54.79%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    1 LSERRLHGPGMWGAYPDAVIPGLGVVEGGQTSTGSVIAWFRRLVSNGEEHNLLPYATLNEEAEAVPIGCEGLV 219
             ++  +HG G WG YPDAVIPGL  +EGGQTSTGS+I WF++L+ +G     + Y  LN EA A+P G EGLV
Sbjct:  274 FTDTEVHGAGFWGTYPDAVIPGLHAIEGGQTSTGSIINWFKKLIDSG-----ITYEQLNAEASALPPGSEGLV 341
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BLAST of mRNA_H-elongata_contig118630.1439.1 vs. uniprot
Match: A0A399FBF8_9DEIN (Ribulokinase n=1 Tax=Meiothermus granaticius NBRC 107808 TaxID=1227551 RepID=A0A399FBF8_9DEIN)

HSP 1 Score: 87.0 bits (214), Expect = 2.400e-18
Identity = 44/73 (60.27%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    1 LSERRLHGPGMWGAYPDAVIPGLGVVEGGQTSTGSVIAWFRRLVSNGEEHNLLPYATLNEEAEAVPIGCEGLV 219
            LS++ LH  G+WG+YPDAV+ GL  VEGGQTSTGSVIAW RRL+   +      YA LNE+A A+P G EGLV
Sbjct:  272 LSDQPLHTRGLWGSYPDAVVQGLHTVEGGQTSTGSVIAWLRRLLGEPD------YAPLNEKAAALPPGAEGLV 338
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BLAST of mRNA_H-elongata_contig118630.1439.1 vs. uniprot
Match: W9GYQ8_9PROT (Carbohydrate kinase n=4 Tax=Skermanella TaxID=204447 RepID=W9GYQ8_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 8.400e-18
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 1 
Query:   16 LHGPGMWGAYPDAVIPGLGVVEGGQTSTGSVIAWFRRLVSNGEEHNLLPYATLNEEAEAVPIGCEGLV 219
            +HG G WG YPDAVIPGL  +EGGQTSTGSVI WF++L+  G     + Y  LN EA A+P G EGLV
Sbjct:  279 VHGAGFWGTYPDAVIPGLHAIEGGQTSTGSVINWFKKLIDGG-----MTYERLNAEAAAMPPGSEGLV 341
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BLAST of mRNA_H-elongata_contig118630.1439.1 vs. uniprot
Match: A0A7C7KPM4_9PROT (Carbohydrate kinase n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A7C7KPM4_9PROT)

HSP 1 Score: 85.5 bits (210), Expect = 8.510e-18
Identity = 43/73 (58.90%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:    1 LSERRLHGPGMWGAYPDAVIPGLGVVEGGQTSTGSVIAWFRRLVSNGEEHNLLPYATLNEEAEAVPIGCEGLV 219
            LSE   HG G+WG Y DAVIPGL VVEGGQTSTGSV+ WFR L+  G     + Y  LN EA+ +P G EGL+
Sbjct:  277 LSEMAFHGAGIWGTYADAVIPGLHVVEGGQTSTGSVVKWFRDLLGGG-----VSYDDLNAEAKDLPPGSEGLI 344
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118630.1439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K691_9PHAE3.280e-3083.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2P6TT72_CHLSO1.770e-2057.53Glycerol kinase n=1 Tax=Chlorella sorokiniana TaxI... [more]
E1ZGK8_CHLVA8.420e-2061.64Glycerol kinase n=1 Tax=Chlorella variabilis TaxID... [more]
A0A848ZI02_9PROT3.650e-1958.90Carbohydrate kinase n=1 Tax=Inquilinus sp. TaxID=1... [more]
UPI0004AD97D45.060e-1960.27FGGY-family carbohydrate kinase n=1 Tax=Deinococcu... [more]
D7FTM7_ECTSI1.270e-1890.70Xylulose kinase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A512DVM5_9PROT1.740e-1854.79Carbohydrate kinase n=1 Tax=Skermanella aerolata T... [more]
A0A399FBF8_9DEIN2.400e-1860.27Ribulokinase n=1 Tax=Meiothermus granaticius NBRC ... [more]
W9GYQ8_9PROT8.400e-1860.29Carbohydrate kinase n=4 Tax=Skermanella TaxID=2044... [more]
A0A7C7KPM4_9PROT8.510e-1858.90Carbohydrate kinase n=1 Tax=Kiloniellaceae bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118630contigH-elongata_contig118630:1143..1971 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score82.8
Seed ortholog evalue6.3e-14
Seed eggNOG ortholog554065.XP_005847054.1
Preferred nameXK-RPE
EggNOG free text desc.Fusion of two proteins both involved in carbon metabolism a sugar xylulose kinase in the first half of the CDS and ribulose-phosphate 3 epimerase in the 3'half
EggNOG OGs34H7E@3041,37NPB@33090,COG0036@1,COG0554@1,KOG2517@2759,KOG3111@2759
COG Functional cat.G
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size219
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118630.1439.1prot_H-elongata_contig118630.1439.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118630 1143..1941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.5393057-CDS-H-elongata_contig118630:1142..12131622929693.5393057-CDS-H-elongata_contig118630:1142..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118630 1143..1213 -
1691679121.3863785-CDS-H-elongata_contig118630:1142..12131691679121.3863785-CDS-H-elongata_contig118630:1142..1213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118630 1143..1213 -
1622929693.5544813-CDS-H-elongata_contig118630:1823..19411622929693.5544813-CDS-H-elongata_contig118630:1823..1941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118630 1824..1941 -
1691679121.3957171-CDS-H-elongata_contig118630:1823..19411691679121.3957171-CDS-H-elongata_contig118630:1823..1941Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118630 1824..1941 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.569275-UTR-H-elongata_contig118630:1941..19711622929693.569275-UTR-H-elongata_contig118630:1941..1971Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118630 1942..1971 -
1691679121.4049897-UTR-H-elongata_contig118630:1941..19711691679121.4049897-UTR-H-elongata_contig118630:1941..1971Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118630 1942..1971 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118630.1439.1

>prot_H-elongata_contig118630.1439.1 ID=prot_H-elongata_contig118630.1439.1|Name=mRNA_H-elongata_contig118630.1439.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MWGAYPDAVIPGLGVVEGGQTSTGSVIAWFRRLVSNGEEHNLLPYATLNE
EAEAVPIGCEGLV
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mRNA from alignment at H-elongata_contig118630:1143..1971-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118630.1439.1 ID=mRNA_H-elongata_contig118630.1439.1|Name=mRNA_H-elongata_contig118630.1439.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=829bp|location=Sequence derived from alignment at H-elongata_contig118630:1143..1971- (Himanthalia elongata Himel1 dioecious)
CTCTCCGAAAGGCGCTTGCACGGGCCCGGCATGTGGGGTGCCTACCCAGA
CGCTGTTATCCCGGGCCTCGGCGTCGTGGAGGGGGGTCAGACTTCCACCG
GCAGCGTGATCGCGTGGTTCCGCAGACTCGTTTCGAACGGTGAAGAGCGT
GGCGCTTCTTGTTCAGTATAGTATTATTCCAACGTATTACTAGACATGTT
TTAACCAGCGCTAATGGCCACCGTGGAAGGCGTTTTTCATACGAAGGAAA
AGAAGCGTGCGAGAGTGTGTTACGCCGGGGGTCGCTGGGAGCTTTGCCAT
GCCCCTCTTTCAGTTATATTACTAATTATAATACAAAGACACAAATGTTA
TCTGCAAGAGGGCAATTCTGTACGGTAGGATGCTCTTAGGAGGCAATGTC
TTGGCCAGTAGACTGGAAGAGCTTCAAATTGCCAGCTAACTCAACCACGT
ACAGGTAAAGCAAAAAACTCGTAAAAAAAGTAAATTATATACTACTTGTG
AAAACGATACACCACGTAAATATTTATGTAGATCGTGTGTACGTATTTTA
ATTTTTAATTGGTCATTTTAGTTTTTTAAAAAATTATTATTGTATTTTTT
TTTCTAATGGCCGGGATATTTTGTAGTTAGATCTCGTGCTCTGACATATT
TTGGTGCCGAACGGCCGATAATTTTTTGATCGATCGTGTGCTGCCATGTC
CTGGTATGGGTGGCCCGACCTTTCTGACTTTGCCCGGCCTCTGGCGCATC
AGACCCAGATAACCTGTTGCCGTACGCGACGCTGAACGAAGAGGCGGAGG
CTGTGCCGATTGGCTGCGAAGGGCTGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig118630:1143..1971-

>mRNA_H-elongata_contig118630.1439.1 ID=mRNA_H-elongata_contig118630.1439.1|Name=mRNA_H-elongata_contig118630.1439.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig118630:1143..1971- (Himanthalia elongata Himel1 dioecious)
ATGTGGGGTGCCTACCCAGACGCTGTTATCCCGGGCCTCGGCGTCGTGGA
GGGGGGTCAGACTTCCACCGGCAGCGTGATCGCGTGGTTCCGCAGACTCG
TTTCGAACGGTGAAGAGCATGTGGGGTGCCTACCCAGACGCTGTTATCCC
GGGCCTCGGCGTCGTGGAGGGGGGTCAGACTTCCACCGGCAGCGTGATCG
CGTGGTTCCGCAGACTCGTTTCGAACGGTGAAGAGCATAACCTGTTGCCG
TACGCGACGCTGAACGAAGAGGCGGAGGCTGTGCCGATTGGCTGCGAAGG
GCTGGTAATAACCTGTTGCCGTACGCGACGCTGAACGAAGAGGCGGAGGC
TGTGCCGATTGGCTGCGAAGGGCTGGTA
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